BLASTX nr result
ID: Rehmannia22_contig00020419
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00020419
(971 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 74 8e-11
gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [... 74 1e-10
dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ... 66 2e-08
ref|XP_006292284.1| hypothetical protein CARUB_v10018494mg [Caps... 66 2e-08
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 66 2e-08
gb|EMJ04273.1| hypothetical protein PRUPE_ppa023544mg, partial [... 62 3e-07
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 60 1e-06
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga... 60 1e-06
ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia... 60 1e-06
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia... 60 2e-06
gb|ABK28206.1| unknown [Arabidopsis thaliana] 59 2e-06
ref|NP_180979.1| polynucleotidyl transferase, ribonuclease H-lik... 59 2e-06
ref|NP_172471.1| ribonuclease H-like protein [Arabidopsis thalia... 59 3e-06
gb|AAC34342.1| Hypothetical protein [Arabidopsis thaliana] 59 3e-06
dbj|BAB02611.1| unnamed protein product [Arabidopsis thaliana] 58 6e-06
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 73.9 bits (180), Expect = 8e-11
Identities = 67/256 (26%), Positives = 111/256 (43%), Gaps = 6/256 (2%)
Frame = -3
Query: 951 CFACGAEMETSEHIFFFCPRALKVWKLAPISWNIWPKTGCSFGLWWRD---LCTLPHKSN 781
C CG + E+S H+ CP A KVW+LAP+ +N T S L D + LP
Sbjct: 1012 CKRCG-QTESSLHLMLLCPYAKKVWELAPVLFNPSEATHSSVALLLVDAKRMVALPPTG- 1069
Query: 780 ICDRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSE---WMEFDIAKSIPIRATL 610
L ++LW LWK RN F N E +V A+ + WME + P +
Sbjct: 1070 -LGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARAWMEAQLLIHHPSPISD 1128
Query: 609 SPTTTSSLMGVNQSPTQIVGHKAIFVSAIWKENNSAGWGVVIKNQENVTIKSWKAFRSDC 430
P SPT + + FV A W + G G +++ V IK ++ S
Sbjct: 1129 YP-----------SPTPNLKVTSCFVDAAWTTSGYCGMGWFLQDPYKVKIKENQSSSSFV 1177
Query: 429 ANSVEALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNNDQRPESAKYTVAADVLTLQ 250
+++ A LAV + + + + + VF +E++++LN+ + ++ L+
Sbjct: 1178 GSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLLNSGK-----------SIVELR 1226
Query: 249 NVFESCRFLTVGHSYL 202
+ R L+V ++L
Sbjct: 1227 GLLHDIRELSVSFTHL 1242
>gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
Length = 920
Score = 73.6 bits (179), Expect = 1e-10
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 12/213 (5%)
Frame = -3
Query: 969 VLIDDICFACGAEMETSEHIFFFCPRALKVWKLAPISWNIWPKTGCSFGLWWRDLCT--L 796
++ C C E+ EH F CP VW +P+++ + P++ +F W+ L +
Sbjct: 639 IISSPFCPICNQYEESEEHAIFLCPWTQAVWFGSPLNYRVNPQSITTFDRWFTGLLNSQM 698
Query: 795 PHKSNICDRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAKSIPIRA 616
KS +SL ++ W +WK R + F++I + VV A S EFD+ + I
Sbjct: 699 FSKSERVWVLSLVSFISWEIWKARCKFLFEDITIDPRCVVERAASAAEEFDVLRRHEI-- 756
Query: 615 TLSPTTTSSLMGVNQSPTQI-----VGHKAIFVSAIWKENNSAGWGVVIKNQENVTIKSW 451
+T + GV PT I G I A WK N+ AG GVV++N +
Sbjct: 757 -----STRNGAGVFSQPTDIWKPPVNGAIKINFDAAWK-NHEAGLGVVMRNHNKDFCYGF 810
Query: 450 KAFRSDCANS-----VEALLLAVRESQLSSYKE 367
+ R C NS EA + A+R + L Y +
Sbjct: 811 ASKR--CCNSALNAETEAAIEALRCASLRGYSK 841
>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1197
Score = 66.2 bits (160), Expect = 2e-08
Identities = 70/264 (26%), Positives = 111/264 (42%), Gaps = 4/264 (1%)
Frame = -3
Query: 960 DDICFACGAEMETSEHIFFFCPRALKVWKLAPISWN--IWPKTGCSFGL-WWRDLCTLPH 790
D +C CG E+ETS H F C +VW+LAP+ T GL W + TLP
Sbjct: 908 DPVCCRCG-ELETSSHALFNCMFVQRVWRLAPLEGIDLFLVFTDVKLGLSWLKKKKTLPS 966
Query: 789 KSNICDRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAKSIPIRATL 610
+L ++ W LW TRN F NI+ E E +N A+ + E+ A+ R +
Sbjct: 967 VG--LGYCALYPWICWTLWITRNQKVFSNILFSELETINKAIQDAKEWQFAQEPNSRFQV 1024
Query: 609 SPTTTSSLMGVNQSPTQIVGHKAIFVSAIWKE-NNSAGWGVVIKNQENVTIKSWKAFRSD 433
S MG+ ++ + I A W SAG G +K+ + +K A
Sbjct: 1025 -----RSSMGL-RAEVFSLNSTVIHTDAAWSVLTCSAGLGWTLKS-PGIPLKKNSALSEH 1077
Query: 432 CANSVEALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNNDQRPESAKYTVAADVLTL 253
+ + A L V + S++ + + + +V+TM Q P S + + D+ +
Sbjct: 1078 VPSPLVAEALVVHSALWSAHNLG-LHDVILKSDCQVLTMAIISQFPLSEIHGILQDITSS 1136
Query: 252 QNVFESCRFLTVGHSYLVECDKLA 181
+ F S + + V D LA
Sbjct: 1137 SSSFSSFSCCHIPRTANVIADSLA 1160
>ref|XP_006292284.1| hypothetical protein CARUB_v10018494mg [Capsella rubella]
gi|482560991|gb|EOA25182.1| hypothetical protein
CARUB_v10018494mg [Capsella rubella]
Length = 282
Score = 66.2 bits (160), Expect = 2e-08
Identities = 70/272 (25%), Positives = 112/272 (41%), Gaps = 11/272 (4%)
Frame = -3
Query: 954 ICFACGAEMETSEHIFFFCPRALKVWKLAP----ISWNIWPKTGCSFGLWWRDLCTLPHK 787
+C GA E++ H+FF CP A +W AP ++ NI G + + C P
Sbjct: 22 VCPHYGAP-ESTAHLFFSCPYAAGIWARAPLAVCLNLNIVNSIGRTITALNKLNCLPP-- 78
Query: 786 SNICDRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAKSIPIRATLS 607
S I L ++LW +W RN F+ I +P + + LA+ E+ A+ + + +
Sbjct: 79 SGITG--PLAPWILWAIWSARNQLIFKKISIPGYDSLTLAIIGAKEWHEAQGMTHGS--A 134
Query: 606 PTTTSSLMGVNQSPTQIVGHKAIFVSAIWKENNSAGWGVVIKNQENVTIK----SWKAFR 439
P T + G+ P + H A W ++ AG G + + +N T + + R
Sbjct: 135 PPTRNQPCGIKPPPDTVTIH----TDAAWMDSGQAGLGWIFTDSQNRTCSTGSMACRHVR 190
Query: 438 SDCANSVEALLLAVR---ESQLSSYKENWKYIAVFIGEEEVVTMLNNDQRPESAKYTVAA 268
S A L AVR ES LS+ +F + ++ N P + +
Sbjct: 191 SPLMAEALATLTAVRVATESGLSN--------VLFASDSLILVKALNLVLPSKELHGILH 242
Query: 267 DVLTLQNVFESCRFLTVGHSYLVECDKLALQA 172
D+L L + F SC F + D LA A
Sbjct: 243 DILELSSNFSSCFFTFISRELNRRDDTLAKDA 274
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 66.2 bits (160), Expect = 2e-08
Identities = 51/194 (26%), Positives = 98/194 (50%), Gaps = 6/194 (3%)
Frame = -3
Query: 960 DDICFACGAEMETSEHIFFFCPRALKVWKLAPI--SWNIWPKTGCSFGLWWRDLCTLPHK 787
+ +C CGAE E+ H+ F CP + ++W L+PI S I+P+ + + L + +
Sbjct: 961 EKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDF--LLSRGKE 1018
Query: 786 SNIC-DRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAKSIPIRATL 610
+I D + + ++LW++WK+RN + F+N+I +++ A+ E + A S +
Sbjct: 1019 FDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQANSKEVATEY 1078
Query: 609 SPTTTSSLMGVNQSPTQIVGHKAIFVSAIWKENNSAGWGVVIKNQENVTIKSWKAFR--- 439
P ++ N PT+ V F ++ ++ +G G V+ +Q+ V + K+ R
Sbjct: 1079 PP---PQVVPANLPPTRNV---CQFDASWHLKDTLSGHGWVLVDQDIVLLLGLKSARKSL 1132
Query: 438 SDCANSVEALLLAV 397
S V++LL A+
Sbjct: 1133 SPLHAEVDSLLWAM 1146
>gb|EMJ04273.1| hypothetical protein PRUPE_ppa023544mg, partial [Prunus persica]
Length = 394
Score = 62.4 bits (150), Expect = 3e-07
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 12/213 (5%)
Frame = -3
Query: 969 VLIDDICFACGAEMETSEHIFFFCPRALKVWKLAPISWNIWPKTGCSFGLWWRDLCT--L 796
++ C C E+ EH F CP VW +P+++ + P++ +F W+ L +
Sbjct: 113 IISSPFCPICNQYEESEEHAIFLCPWTQAVWFGSPLNYRVNPQSITTFDRWFTGLLNSQM 172
Query: 795 PHKSNICDRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAKSIPIRA 616
KS +SL ++ W +WK R VV A S EFD+ + I
Sbjct: 173 FSKSERVWVLSLVSFISWEIWKARC-------------VVERATSAAEEFDVLRRHAI-- 217
Query: 615 TLSPTTTSSLMGVNQSPTQI-----VGHKAIFVSAIWKENNSAGWGVVIKNQENVTIKSW 451
+T + GV PT I G + A WK N+ AG GVV++N +
Sbjct: 218 -----STRNGAGVFSQPTDIWKPPVNGAIKVNFDAAWK-NHEAGLGVVMRNHNKDFCYGF 271
Query: 450 KAFRSDCANS-----VEALLLAVRESQLSSYKE 367
+ R C NS EA + A+R + L Y +
Sbjct: 272 ASKR--CCNSALNAETEAAIEALRCASLRGYSK 302
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 60.5 bits (145), Expect = 1e-06
Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 19/282 (6%)
Frame = -3
Query: 969 VLIDDICFACGAEMETSEHIFFFCPRALKVWKLA--PISWNIWPKTGCSFG---LWWR-- 811
+L D C +CGA E+ H F C A ++W L+ P + I+P L+WR
Sbjct: 860 ILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIP 919
Query: 810 ---DLCTLPHKSNICDRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSE---WME 649
D P +++W++WK RN F+N+ E++ LAV E W E
Sbjct: 920 SGVDSAPYP-------------WIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQE 966
Query: 648 FDIAKSIPIRATLSPTTTSSLMGVNQSPTQIVGHKAIFVSAIWKEN---NSAGWGVVIKN 478
+ +LS + + V+Q T G + F+ WK + + GW +
Sbjct: 967 AQVELHSERHGSLSIDSRIRVRDVSQD-TTFSGFRC-FIDGSWKASDQFSGTGWFCLSSL 1024
Query: 477 QENVTIKSWKAFR--SDCANSVEALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNN- 307
E+ T+ + R S +EALL A++ + + +N +A F ++V M+++
Sbjct: 1025 GESPTMGAANVRRSLSPLHTEMEALLWAMK-CMIGADNQN---VAFFTDCSDLVKMVSSP 1080
Query: 306 DQRPESAKYTVAADVLTLQNVFESCRFLTVGHSYLVECDKLA 181
+ P + Y ++ + + F + + S V+ DKLA
Sbjct: 1081 TEWPAFSVY--LEELQSDREEFTNFSLSLISRSANVKADKLA 1120
>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1365
Score = 60.5 bits (145), Expect = 1e-06
Identities = 69/286 (24%), Positives = 106/286 (37%), Gaps = 18/286 (6%)
Frame = -3
Query: 969 VLIDDICFACGAEMETSEHIFFFCPRALKVWKLAPISWNIWPKTGCSFGLWWRDLCTLPH 790
+LI ++C C + E H+F C + VW + + I P T S W ++ L
Sbjct: 1089 ILIQEMCSLCKQDKENESHLFRDCNISRHVWASSLLGIRICPMTVISIEDWIKNFLKLLW 1148
Query: 789 KSN--ICDRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAKSIPIRA 616
K + R+S + LW +W RN N+I EV +A+ M IA IR
Sbjct: 1149 KEDGVKSPRVSEFIATLWAIWIHRN-----NVIFRSEEVNPVAI---MNLKIALLKEIRE 1200
Query: 615 T---------LSPTTTSSLMGVNQSPTQIVGHKAIF-VSAIWKENN------SAGWGVVI 484
+ LS S L G + S K I V WK + GW ++
Sbjct: 1201 SSKFRDRNNPLSHIENSRLEGCHVSQLDSTSDKCIVKVDGAWKRHKQKNPRAGIGWSALL 1260
Query: 483 KNQENVTIKSWKAFRSDCANSVEALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNND 304
N + S A+L +RE ++ + + +V L+N
Sbjct: 1261 DNSKIFEGNDVVISLSSLQTEAHAVLRGLRE----AFAHGVNRVHICSDSRVLVQALHNR 1316
Query: 303 QRPESAKYTVAADVLTLQNVFESCRFLTVGHSYLVECDKLALQAFL 166
Q P ++A D+ + N F C+ VG + LA A L
Sbjct: 1317 QYPFEVA-SIAHDIQAMCNKFLFCKIQHVGRDVVAPAHALATAARL 1361
>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
thaliana] gi|7269807|emb|CAB79667.1| putative protein
[Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
putative reverse transcriptase/RNA-dependent DNA
polymerase [Arabidopsis thaliana]
gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 575
Score = 60.1 bits (144), Expect = 1e-06
Identities = 69/292 (23%), Positives = 120/292 (41%), Gaps = 6/292 (2%)
Frame = -3
Query: 960 DDICFACGAEMETSEHIFFFCPRALKVWKLAPISWNIWPKTGCSF--GLWWRDLCTLPHK 787
+ C C + ET H+ F C A W ++ I + + S L+W + L +
Sbjct: 292 ESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYW--VFNLGNG 349
Query: 786 SNICDRIS-LTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAKSIPIRATL 610
+ ++ S L ++LW LWK RN F+ EV+ A + E+ I T
Sbjct: 350 NPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTK 409
Query: 609 SPTTTSSLMGVNQSPTQIVGHKAIFVSAIW-KENNSAGWGVVIKNQENVTIKSWKAFRS- 436
SS P Q V A W ++N G G V++N++ W R+
Sbjct: 410 PQVNRSSCGRWRPPPHQWV---KCNTDATWNRDNERCGIGWVLRNEKGEV--KWMGARAL 464
Query: 435 -DCANSVEALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNNDQRPESAKYTVAADVL 259
+ +EA L A+R + LS + + Y+ + ++ +LNND+ S K T+ D+
Sbjct: 465 PKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPSLKPTI-QDLQ 523
Query: 258 TLQNVFESCRFLTVGHSYLVECDKLALQAFLC*SGHQFLDYPPW*NCYISRW 103
L + F +F+ + +++A ++ FL+Y P + W
Sbjct: 524 RLLSQFTEVKFVFIPREGNTLAERVARESL------SFLNYDPKLYSIVPSW 569
>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
protein [Arabidopsis thaliana]
gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 343
Score = 59.7 bits (143), Expect = 2e-06
Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 10/298 (3%)
Frame = -3
Query: 951 CFACGAEMETSEHIFFFCPRALKVWKLAPISWNIWPKTGCSFGLWWRDLCTLPHKSNICD 772
C C E ETS+H+FF C A +VW+ + I TG + L + +
Sbjct: 56 CHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQ 115
Query: 771 RISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLA---VSEWMEFDI---AKSIPIRATL 610
+L +++LW LWK+RN FQ + + A V EW + + + + + ++
Sbjct: 116 LFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSR 175
Query: 609 SPTTTSSLMGVNQSPTQIVGHKAIFVSAIWKENNSAGWGVVIKNQENVTIKSWKAFRSDC 430
T + + P+ + + N AGW +++++ V + S +A S
Sbjct: 176 HQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGW--LMRDENGVYMGSGQAIGSTT 233
Query: 429 ANSVE----ALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNNDQRPESAKYTVAADV 262
++S+E AL++A++ + Y++ +F G+ + V L N+++ ++ +
Sbjct: 234 SDSLESEFQALIIAMQHAWSQGYRK-----VIFEGDSKQVEELMNNEKLNFGRFNWIREG 288
Query: 261 LTLQNVFESCRFLTVGHSYLVECDKLALQAFLC*SGHQFLDYPPW*NCYISRWLQFFH 88
Q FE F V + D LA +F Y P +I+ L + H
Sbjct: 289 RFWQKRFEEAVFKWVPRTNNQPADILAKHHLQPNQSFKFHYYVP---AFITSTLYYDH 343
>gb|ABK28206.1| unknown [Arabidopsis thaliana]
Length = 293
Score = 59.3 bits (142), Expect = 2e-06
Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 7/292 (2%)
Frame = -3
Query: 951 CFACGAEMETSEHIFFFCPRALKVWKLAPISW---NIWPKTGCSFGLWWRDL-CTLPHKS 784
C C ET H+ F C A VW ++PI W + + W +L +P
Sbjct: 12 CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKLG 71
Query: 783 NICDRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAKSIPIRATLSP 604
I + L ++LW LWK+RN F+ EV+ A+ ++ E+ + + +A+
Sbjct: 72 KIGN---LVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQ 128
Query: 603 TTTSSLMGVNQSPTQIVGHKAIFVSAIWK-ENNSAGWGVVIKNQENVTIKSWKAFRS--D 433
+ + P Q V A W+ EN G G +++N+ + W R+
Sbjct: 129 VERNLSVQWKAPPYQWV---KCNTDATWQLENPRCGIGWILRNESGGVL--WMGARALPR 183
Query: 432 CANSVEALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNNDQRPESAKYTVAADVLTL 253
N +EA L A+R + L+ + N+K I + +V +LN+D + + D+ L
Sbjct: 184 TKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDFWPTLQ-PALEDIQQL 242
Query: 252 QNVFESCRFLTVGHSYLVECDKLALQAFLC*SGHQFLDYPPW*NCYISRWLQ 97
+ FE +F D++A ++ F +Y P + +WL+
Sbjct: 243 LHHFEEVKFEFTPRGGNKVADRIARESI------SFSNYDPKLFSIVPQWLR 288
>ref|NP_180979.1| polynucleotidyl transferase, ribonuclease H-like superfamily
protein [Arabidopsis thaliana] gi|3337363|gb|AAC27408.1|
putative non-LTR retroelement reverse transcriptase
[Arabidopsis thaliana] gi|91805481|gb|ABE65469.1|
hypothetical protein At2g34320 [Arabidopsis thaliana]
gi|330253864|gb|AEC08958.1| polynucleotidyl transferase,
ribonuclease H-like superfamily protein [Arabidopsis
thaliana]
Length = 292
Score = 59.3 bits (142), Expect = 2e-06
Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 7/292 (2%)
Frame = -3
Query: 951 CFACGAEMETSEHIFFFCPRALKVWKLAPISW---NIWPKTGCSFGLWWRDL-CTLPHKS 784
C C ET H+ F C A VW ++PI W + + W +L +P
Sbjct: 12 CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKLG 71
Query: 783 NICDRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAKSIPIRATLSP 604
I + L ++LW LWK+RN F+ EV+ A+ ++ E+ + + +A+
Sbjct: 72 KIGN---LVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQ 128
Query: 603 TTTSSLMGVNQSPTQIVGHKAIFVSAIWK-ENNSAGWGVVIKNQENVTIKSWKAFRS--D 433
+ + P Q V A W+ EN G G +++N+ + W R+
Sbjct: 129 VERNLSVQWKAPPYQWV---KCNTDATWQLENPRCGIGWILRNESGGVL--WMGARALPR 183
Query: 432 CANSVEALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNNDQRPESAKYTVAADVLTL 253
N +EA L A+R + L+ + N+K I + +V +LN+D + + D+ L
Sbjct: 184 TKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDFWPTLQ-PALEDIQQL 242
Query: 252 QNVFESCRFLTVGHSYLVECDKLALQAFLC*SGHQFLDYPPW*NCYISRWLQ 97
+ FE +F D++A ++ F +Y P + +WL+
Sbjct: 243 LHHFEEVKFEFTPRGGNKVADRIARESI------SFSNYDPKLFSIVPQWLR 288
>ref|NP_172471.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|332190406|gb|AEE28527.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 303
Score = 58.9 bits (141), Expect = 3e-06
Identities = 68/283 (24%), Positives = 115/283 (40%), Gaps = 12/283 (4%)
Frame = -3
Query: 951 CFACGAEMETSEHIFFFCPRALKVWKLAPISWNIWPKTGCSFGLWWRDLCTLPHKSNICD 772
C CGA ETS H+ F C A +VW LAP+ P G + L K+ +
Sbjct: 33 CARCGAP-ETSTHMLFHCDFAAQVWNLAPLQLGHIP-----IGTPILEALNLLKKTIVLP 86
Query: 771 RI-----SLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSE---WMEFDIAKSIPIRA 616
+ +L ++ W +WK RN FQN E V AV + W +A A
Sbjct: 87 PVGIHTATLFPWICWHIWKARNQLIFQNSHFSVIETVTKAVQDALAWQSAQLALPKVRVA 146
Query: 615 TLSPTTTSSLMGVNQSPTQIVGHKAI-FVSAIWKENNS---AGWGVVIKNQENVTIKSWK 448
T P +T++L H + +V A W++ +S +GW + I ++
Sbjct: 147 TPRPNSTTTLT-----------HDFLCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTFS 195
Query: 447 AFRSDCANSVEALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNNDQRPESAKYTVAA 268
A + + A A++ + L + + + V + +V LN++ + +
Sbjct: 196 AGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDALNSNVSLNEI-FGLLV 254
Query: 267 DVLTLQNVFESCRFLTVGHSYLVECDKLALQAFLC*SGHQFLD 139
++ +++N F S F + D A + LC SG+ LD
Sbjct: 255 EIRSIRNRFRSISFQFIPRLVNSIAD-AAAKLSLCISGNIGLD 296
>gb|AAC34342.1| Hypothetical protein [Arabidopsis thaliana]
Length = 374
Score = 58.9 bits (141), Expect = 3e-06
Identities = 68/283 (24%), Positives = 115/283 (40%), Gaps = 12/283 (4%)
Frame = -3
Query: 951 CFACGAEMETSEHIFFFCPRALKVWKLAPISWNIWPKTGCSFGLWWRDLCTLPHKSNICD 772
C CGA ETS H+ F C A +VW LAP+ P G + L K+ +
Sbjct: 33 CARCGAP-ETSTHMLFHCDFAAQVWNLAPLQLGHIP-----IGTPILEALNLLKKTIVLP 86
Query: 771 RI-----SLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSE---WMEFDIAKSIPIRA 616
+ +L ++ W +WK RN FQN E V AV + W +A A
Sbjct: 87 PVGIHTATLFPWICWHIWKARNQLIFQNSHFSVIETVTKAVQDALAWQSAQLALPKVRVA 146
Query: 615 TLSPTTTSSLMGVNQSPTQIVGHKAI-FVSAIWKENNS---AGWGVVIKNQENVTIKSWK 448
T P +T++L H + +V A W++ +S +GW + I ++
Sbjct: 147 TPRPNSTTTLT-----------HDFLCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTFS 195
Query: 447 AFRSDCANSVEALLLAVRESQLSSYKENWKYIAVFIGEEEVVTMLNNDQRPESAKYTVAA 268
A + + A A++ + L + + + V + +V LN++ + +
Sbjct: 196 AGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDALNSNVSLNEI-FGLLV 254
Query: 267 DVLTLQNVFESCRFLTVGHSYLVECDKLALQAFLC*SGHQFLD 139
++ +++N F S F + D A + LC SG+ LD
Sbjct: 255 EIRSIRNRFRSISFQFIPRLVNSIAD-AAAKLSLCISGNIGLD 296
>dbj|BAB02611.1| unnamed protein product [Arabidopsis thaliana]
Length = 332
Score = 57.8 bits (138), Expect = 6e-06
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Frame = -3
Query: 969 VLIDDICFACGAEMETSEHIFFFCPRALKVWKLAPISWNIWPKTGCSFGLWWRDLCTLPH 790
++++ C CG E+E + HIFF CP A+KVW LA + PK ++ + +
Sbjct: 164 IVVETGCKRCG-EIEDALHIFFRCPIAVKVWDLA----TLLPKPRAGSVVYVKKIL---E 215
Query: 789 KSNIC--------DRISLTVYMLWWLWKTRNLWRFQNIIMPENEVVNLAVSEWMEFDIAK 634
K C L ++LW+LWK RN F++ I+ + V ++ E + AK
Sbjct: 216 KGRTCLSLPPLGLGSTPLYPWILWFLWKARNFVIFEDRILFAEDTVQKSILEAKRWHNAK 275
Query: 633 SIPIRATLSPTTTSSLMGVNQSPTQIVGHKAI--FVSAIWKENNS-AGWGVVIKNQENVT 463
+PT+ + + V + + +A F A W+ + G G +IK+ NV
Sbjct: 276 -----LQQTPTSPTLSLAVERGDSSEAHSEAFPCFSDAAWQATSKVGGMGWIIKDLHNVV 330
Query: 462 I 460
+
Sbjct: 331 L 331