BLASTX nr result

ID: Rehmannia22_contig00020350 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00020350
         (860 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMT20940.1| ABC transporter C family member 10 [Aegilops taus...    59   2e-06
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta...    57   9e-06

>gb|EMT20940.1| ABC transporter C family member 10 [Aegilops tauschii]
          Length = 2212

 Score = 59.3 bits (142), Expect = 2e-06
 Identities = 26/54 (48%), Positives = 38/54 (70%)
 Frame = -3

Query: 534 CKAIS*ATANFWWGTSLERQNKIH*RVWERITLSKQEGGMGFHDLQVFNGALHA 373
           C+ +S  T NFWWG   +R+ KIH   W+++ + K++GGMGF DL++FN AL A
Sbjct: 86  CEELSQITRNFWWGDENDRR-KIHWLAWDKLLMPKEKGGMGFRDLRLFNQALLA 138


>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1138

 Score = 57.0 bits (136), Expect = 9e-06
 Identities = 26/62 (41%), Positives = 39/62 (62%)
 Frame = -3

Query: 558 CKANCKANCKAIS*ATANFWWGTSLERQNKIH*RVWERITLSKQEGGMGFHDLQVFNGAL 379
           C    K  CK ++ A ++FWW  +LE + K H   WE++ L+K+ GG+GF D++ FN AL
Sbjct: 583 CFKLTKTTCKNLTSAMSDFWWN-ALEHKRKTHWVSWEKLCLAKESGGLGFRDIESFNQAL 641

Query: 378 HA 373
            A
Sbjct: 642 LA 643


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