BLASTX nr result

ID: Rehmannia22_contig00020129 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00020129
         (717 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270330.2| PREDICTED: E3 ubiquitin-protein ligase COP1-...    50   6e-07
emb|CBI41056.3| unnamed protein product [Vitis vinifera]               50   6e-07
ref|XP_004289299.1| PREDICTED: uncharacterized protein LOC101298...    60   9e-07
ref|XP_004250243.1| PREDICTED: E3 ubiquitin-protein ligase COP1-...    47   5e-06

>ref|XP_002270330.2| PREDICTED: E3 ubiquitin-protein ligase COP1-like [Vitis vinifera]
          Length = 687

 Score = 50.1 bits (118), Expect(2) = 6e-07
 Identities = 32/64 (50%), Positives = 36/64 (56%), Gaps = 22/64 (34%)
 Frame = +3

Query: 288 DSYSARPGPHECQGLEDFQSVLSTFTKY----------------------SIEFDRDDEL 401
           D+ S+R G H   GLEDFQSVL+TFT+Y                      SIEFDRDDEL
Sbjct: 340 DTNSSREGYHA--GLEDFQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDEL 397

Query: 402 FATA 413
           FATA
Sbjct: 398 FATA 401



 Score = 30.0 bits (66), Expect(2) = 6e-07
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +1

Query: 415 TAGVSRRIKIFEFS 456
           TAGVSRRIK+FEFS
Sbjct: 400 TAGVSRRIKVFEFS 413


>emb|CBI41056.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score = 50.1 bits (118), Expect(2) = 6e-07
 Identities = 32/64 (50%), Positives = 36/64 (56%), Gaps = 22/64 (34%)
 Frame = +3

Query: 288 DSYSARPGPHECQGLEDFQSVLSTFTKY----------------------SIEFDRDDEL 401
           D+ S+R G H   GLEDFQSVL+TFT+Y                      SIEFDRDDEL
Sbjct: 255 DTNSSREGYHA--GLEDFQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDEL 312

Query: 402 FATA 413
           FATA
Sbjct: 313 FATA 316



 Score = 30.0 bits (66), Expect(2) = 6e-07
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +1

Query: 415 TAGVSRRIKIFEFS 456
           TAGVSRRIK+FEFS
Sbjct: 315 TAGVSRRIKVFEFS 328


>ref|XP_004289299.1| PREDICTED: uncharacterized protein LOC101298373 [Fragaria vesca
           subsp. vesca]
          Length = 725

 Score = 59.7 bits (143), Expect = 9e-07
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
 Frame = +3

Query: 450 VFMAPRQPDDLQCGFFVMRYMRQIVKE-----LTSTDSSSLRAIFTQANYSRGDIDEVRS 614
           V M P+QP +++CG++VMRYM++I++       T  D   L A      Y++ ++DEVR 
Sbjct: 662 VLMGPKQPSNMECGYYVMRYMKEIIEGQDLSFATKWDGRKLNA------YTQTELDEVRC 715

Query: 615 EWADCVSNHI 644
           EW D VSN++
Sbjct: 716 EWTDFVSNYV 725


>ref|XP_004250243.1| PREDICTED: E3 ubiquitin-protein ligase COP1-like [Solanum
           lycopersicum]
          Length = 672

 Score = 47.0 bits (110), Expect(2) = 5e-06
 Identities = 28/51 (54%), Positives = 29/51 (56%), Gaps = 22/51 (43%)
 Frame = +3

Query: 327 GLEDFQSVLSTFTKY----------------------SIEFDRDDELFATA 413
           GLEDFQSVLSTFT+Y                      SIEFDRDDELFATA
Sbjct: 336 GLEDFQSVLSTFTRYSRLRVVAELRHSDIFHSANIVSSIEFDRDDELFATA 386



 Score = 30.0 bits (66), Expect(2) = 5e-06
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +1

Query: 415 TAGVSRRIKIFEFS 456
           TAGVSRRIK+FEFS
Sbjct: 385 TAGVSRRIKVFEFS 398


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