BLASTX nr result
ID: Rehmannia22_contig00020035
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00020035
(670 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 450 e-124
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 444 e-122
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 442 e-122
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 442 e-122
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 442 e-122
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 442 e-122
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 442 e-122
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 442 e-122
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 440 e-121
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 398 e-109
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 370 e-100
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 293 3e-77
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 275 7e-72
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 275 7e-72
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 274 2e-71
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 270 3e-70
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 266 6e-69
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 265 1e-68
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 265 1e-68
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 265 1e-68
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 450 bits (1158), Expect = e-124
Identities = 213/223 (95%), Positives = 220/223 (98%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLR+FHRGPTHGDFFLNAHVEPKDVPRYPQDTV++RLENI T+IAFMGDTLH
Sbjct: 93 SFLFMKPAKLRYFHRGPTHGDFFLNAHVEPKDVPRYPQDTVLNRLENISTSIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFHKYDQLEWLT+GHL APNQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+
Sbjct: 213 ASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDP 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 273 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 444 bits (1142), Expect = e-122
Identities = 211/223 (94%), Positives = 215/223 (96%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLH
Sbjct: 93 SFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFHKY QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH
Sbjct: 213 ASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVPD+FLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 273 YVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 442 bits (1138), Expect = e-122
Identities = 211/223 (94%), Positives = 214/223 (95%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLH
Sbjct: 93 SFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH
Sbjct: 213 ASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 273 YVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 442 bits (1138), Expect = e-122
Identities = 211/223 (94%), Positives = 214/223 (95%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLH
Sbjct: 93 SFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH
Sbjct: 213 ASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 273 YVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 442 bits (1138), Expect = e-122
Identities = 211/223 (94%), Positives = 214/223 (95%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLH
Sbjct: 93 SFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH
Sbjct: 213 ASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 273 YVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 442 bits (1138), Expect = e-122
Identities = 211/223 (94%), Positives = 214/223 (95%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLH
Sbjct: 93 SFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH
Sbjct: 213 ASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 273 YVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 442 bits (1138), Expect = e-122
Identities = 211/223 (94%), Positives = 214/223 (95%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLH
Sbjct: 93 SFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH
Sbjct: 213 ASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 273 YVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 442 bits (1138), Expect = e-122
Identities = 211/223 (94%), Positives = 214/223 (95%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPT+IAFMGDTLH
Sbjct: 93 SFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH
Sbjct: 213 ASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 273 YVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 440 bits (1132), Expect = e-121
Identities = 210/223 (94%), Positives = 215/223 (96%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQ+T+I RLENIPTNIAF+GDTLH
Sbjct: 93 SFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQETIIKRLENIPTNIAFIGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFHKY QLEWLTVGHLTAP T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH
Sbjct: 213 ASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 273 YVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 398 bits (1023), Expect = e-109
Identities = 191/218 (87%), Positives = 201/218 (92%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLRFFHRGPTHGD FLNAHVEPKDVPRYPQ+T+I+RL +IPT IAFMGDTLH
Sbjct: 93 SFLFMKPAKLRFFHRGPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FLSPSF+TALFAHSP+LQTLYATLVLPPE RSLYPQIYTLTYSEDGFMYIPGGHAG
Sbjct: 153 FLSPSFLTALFAHSPRLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAG 211
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASYFHKYDQLEWLTVGHLTAP PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T +
Sbjct: 212 ASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQ 271
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAK 17
YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA+
Sbjct: 272 YVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQ 309
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 370 bits (949), Expect = e-100
Identities = 171/223 (76%), Positives = 195/223 (87%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
+FLFMKP+KLR+FHRGP H D FLNA++EPKDVPRYP DTVI + I T +AFMGDTLH
Sbjct: 93 TFLFMKPSKLRYFHRGPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FL PSF+T+LFA SPKLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAG
Sbjct: 153 FLEPSFITSLFARSPKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASY+HKYDQL+WLT G+L + T+TAQRLETKGANHLFIFQRG YLTPERRTFTT
Sbjct: 213 ASYYHKYDQLQWLTAGYLIS-ESTTVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATS 271
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
YVTVP+IFLP N RTPI+KT+ MQ+FFYIKSVKE +ERD+W
Sbjct: 272 YVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLW 314
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 293 bits (750), Expect = 3e-77
Identities = 140/235 (59%), Positives = 175/235 (74%), Gaps = 12/235 (5%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
+F+FMKPAKL++ RGP H D F+N+ VEPKD+ RYP+ TV+ + I T+IAFMGDTLH
Sbjct: 93 TFMFMKPAKLQYLRRGPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FL+P FV LFA SPKL+T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAG
Sbjct: 153 FLTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHL-----TAPN-------QPTITAQRLETKGANHLFIFQRGNYL 167
ASY+H+Y QL WL VG + AP+ + +TAQR+ETKGANHLF+FQRG
Sbjct: 213 ASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQ 272
Query: 166 TPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
TP+ R+ T Y+TVP +FLP+K+N R P+ KTI QMF YIKSVK+ ERDI+
Sbjct: 273 TPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIY 327
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 275 bits (704), Expect = 7e-72
Identities = 129/223 (57%), Positives = 163/223 (73%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
+FLFMK AKL++F RG GD F+N EPKD RYP DT+ S + I T +AFMGDTLH
Sbjct: 93 TFLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FL P+F+T LF SP L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAG
Sbjct: 153 FLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASY H Y QL+WL VGH+ +P+ ITAQR+ETK ANHLF+F RG TP R+F
Sbjct: 213 ASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRA 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+ E D++
Sbjct: 273 YCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLY 315
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus]
gi|56792005|gb|AAW30448.1| viral replicase [Hydrangea
ringspot virus]
Length = 1386
Score = 275 bits (704), Expect = 7e-72
Identities = 129/223 (57%), Positives = 163/223 (73%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
+FLFMK AKL++F RG GD F+N EPKD RYP DT+ S + I T +AFMGDTLH
Sbjct: 93 TFLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAG 311
FL P+F+T LF SP L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAG
Sbjct: 153 FLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAG 212
Query: 310 ASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEH 131
ASY H Y QL+WL VGH+ +P+ ITAQR+ETK ANHLF+F RG TP R+F
Sbjct: 213 ASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRA 272
Query: 130 YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+ E D++
Sbjct: 273 YCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLY 315
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 274 bits (700), Expect = 2e-71
Identities = 133/229 (58%), Positives = 166/229 (72%), Gaps = 6/229 (2%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISR--LENIPTNIAFMGDT 497
+F+FMK +KL++F RGP D FLNAH+EPKDV RY DT+ + I TN AFMGDT
Sbjct: 93 TFMFMKRSKLQYFRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDT 152
Query: 496 LHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGH 317
LHFL + + +F SPKLQTLYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGH
Sbjct: 153 LHFLPLTAIERIFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGH 212
Query: 316 AGASYFHKYDQLEWLTVGHLTAPNQP----TITAQRLETKGANHLFIFQRGNYLTPERRT 149
AGA+Y HKY+QLEW+ VG ++ +T+Q LETKGANHLFIFQRG +LTPE R
Sbjct: 213 AGAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRC 272
Query: 148 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
F+T YVT+P IFLP+++N R PI KT Q+F Y+KSVK ERDIW
Sbjct: 273 FSTETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIW 321
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 270 bits (690), Expect = 3e-70
Identities = 135/229 (58%), Positives = 164/229 (71%), Gaps = 6/229 (2%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
SFLFMKPAKLRFFHRGP H D F+N VEPKDV RY DT++S L + T+ AFMGD+LH
Sbjct: 93 SFLFMKPAKLRFFHRGPQHNDHFINKVVEPKDVARYDPDTLVSSLPTLSTSHAFMGDSLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSE------DGFMYI 329
FL SF+ LF+ + +L+TL AT+VLP EA + L S+YP IYTL Y F Y
Sbjct: 153 FLPFSFLVRLFSDNVQLKTLVATMVLPAEAKFNLASIYPNIYTLQYHRCKKGKVTHFSYA 212
Query: 328 PGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRT 149
PGGH GA Y H+ QL+WL+VG LT TITAQ++ETK ANHLFIFQRG+ +TP R
Sbjct: 213 PGGHKGAEYVHELKQLDWLSVGRLT-DGVTTITAQKIETKAANHLFIFQRGSLMTPCLRN 271
Query: 148 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
F+T +VT+P IFLPEK+N R PI KT++MQMF Y+K VK+ ERDIW
Sbjct: 272 FSTETKFVTLPLIFLPEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIW 320
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 266 bits (679), Expect = 6e-69
Identities = 130/229 (56%), Positives = 161/229 (70%), Gaps = 6/229 (2%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDT 497
+FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDT
Sbjct: 93 TFLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSTTPEIQTRVAFIGDT 152
Query: 496 LHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGH 317
LHFL + +F S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGH
Sbjct: 153 LHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGH 212
Query: 316 AGASYFHKYDQLEWLTVGHL----TAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRT 149
AGASY H+Y QL+WL VG + +T+Q LETKGANHLF+FQRGN+ TP RT
Sbjct: 213 AGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRT 272
Query: 148 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
F +VT+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDIW
Sbjct: 273 FGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIW 321
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 265 bits (677), Expect = 1e-68
Identities = 130/229 (56%), Positives = 161/229 (70%), Gaps = 6/229 (2%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDT 497
+FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDT
Sbjct: 93 TFLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSITPEIQTRVAFIGDT 152
Query: 496 LHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGH 317
LHFL + +F S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGH
Sbjct: 153 LHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGH 212
Query: 316 AGASYFHKYDQLEWLTVGHL----TAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRT 149
AGASY H+Y QL+WL VG + +T+Q LETKGANHLF+FQRGN+ TP RT
Sbjct: 213 AGASYCHEYSQLQWLKVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRT 272
Query: 148 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
F +VT+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDIW
Sbjct: 273 FGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIW 321
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 265 bits (676), Expect = 1e-68
Identities = 130/229 (56%), Positives = 161/229 (70%), Gaps = 6/229 (2%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTNIAFMGDT 497
+FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDT
Sbjct: 93 TFLFMKRSKLQYFHRGPQHGDLFLNAWIEPKDVTRYNLEDLFKPSITPEIQTRVAFIGDT 152
Query: 496 LHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGH 317
LHFL + +F S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGH
Sbjct: 153 LHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGH 212
Query: 316 AGASYFHKYDQLEWLTVGHL----TAPNQPTITAQRLETKGANHLFIFQRGNYLTPERRT 149
AGASY H+Y QL+WL VG + +T+Q LETKGANHLF+FQRGN+ TP RT
Sbjct: 213 AGASYCHEYSQLQWLKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRT 272
Query: 148 FTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
F +VT+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDIW
Sbjct: 273 FGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDIW 321
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 265 bits (676), Expect = 1e-68
Identities = 128/230 (55%), Positives = 162/230 (70%), Gaps = 7/230 (3%)
Frame = -1
Query: 670 SFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTNIAFMGDTLH 491
+F+FMK AKL++F RGP D F+N VEPKDV RY +DT+ S + I T F+GDTLH
Sbjct: 93 TFMFMKRAKLQYFRRGPQQNDTFINQIVEPKDVARYDEDTLHSTIPTIETKTVFIGDTLH 152
Query: 490 FLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDG-------FMY 332
FL PSF+T LFA +PK+QT+ AT+VLP EALY L SLYP +Y+L+Y + F Y
Sbjct: 153 FLPPSFLTKLFARNPKIQTVLATMVLPTEALYGLTSLYPNVYSLSYHKPSKFRRKALFSY 212
Query: 331 IPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHLFIFQRGNYLTPERR 152
PGGH GA Y H+ Q++WL GH+ + ITAQ+LETK ANHLFI++RG Y TPE R
Sbjct: 213 APGGHKGAEYVHELKQIDWLRFGHI-IDGKVCITAQKLETKAANHLFIYKRGKYFTPEIR 271
Query: 151 TFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 2
F T YVT+P IFLP ++N R PI KT++MQ+F Y+K+V AKERDIW
Sbjct: 272 NFNTQTKYVTLPKIFLPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIW 321