BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00019805
         (1601 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc...   733   0.0  
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc...   723   0.0  
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   698   0.0  
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   629   e-178
ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citr...   596   e-168
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr...   596   e-168
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc...   590   e-166
gb|EMJ24087.1| hypothetical protein PRUPE_ppa003591mg [Prunus pe...   578   e-162
gb|EOY33211.1| BSD domain (BTF2-like transcription factors, Syna...   577   e-162
ref|NP_175971.3| probable RNA polymerase II transcription factor...   577   e-162
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab...   576   e-161
ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Caps...   573   e-161
ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A...   568   e-159
ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   560   e-157
ref|XP_006392607.1| hypothetical protein EUTSA_v10011333mg [Eutr...   553   e-155
ref|XP_002310512.2| transcription factor-related family protein ...   550   e-154
gb|EOY33214.1| BSD domain (BTF2-like transcription factors, Syna...   547   e-153
ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transc...   538   e-150
ref|NP_191701.4| probable RNA polymerase II transcription factor...   538   e-150
gb|ESW16172.1| hypothetical protein PHAVU_007G134900g [Phaseolus...   531   e-148

>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum tuberosum]
          Length = 599

 Score =  733 bits (1892), Expect = 0.0
 Identities = 367/497 (73%), Positives = 419/497 (84%)
 Frame = -1

Query: 1598 EAGRAMPEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRK 1419
            E G+A  E    P ++EQLS  E  RRIKLLQENSELQKLH+Q V G IL++AEFWA RK
Sbjct: 104  EIGKATSEKPAVP-HDEQLSATEMGRRIKLLQENSELQKLHRQLVIGGILSEAEFWAARK 162

Query: 1418 KLLDKNDSRTPKQRLALKNEMWTVKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLS 1239
            KLL++++++ PKQR+ALKN+MW+VKPLSDGQ+NRVTFNLTPE+IHQIFAEKPAVRQAYL 
Sbjct: 163  KLLEQSENKKPKQRVALKNDMWSVKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLK 222

Query: 1238 FVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRR 1059
            FVP KMSEKEFWTKYSRAEYLHST+N+V            AVFLK+DDML SEARRKIRR
Sbjct: 223  FVPGKMSEKEFWTKYSRAEYLHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRR 282

Query: 1058 VDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVV 879
            VDPT+DMEAD+GDDY+HLPDHGLP  E K++LE  YEP++RSFSQ LNQHAAVVL+GRV+
Sbjct: 283  VDPTLDMEADEGDDYMHLPDHGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLRGRVI 342

Query: 878  DVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLS 699
            DVELGDTRSVAEA +R+ QAE + E+S+ N  RE   ++S++AEIEDLQGPQDP VA LS
Sbjct: 343  DVELGDTRSVAEAFTRTYQAEQATEVSDENAYRERVKKVSRVAEIEDLQGPQDPPVALLS 402

Query: 698  IKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMN 519
            IKDPRDYFDSQQANA+KALGD  +G + LK SVS  EA+ SL+D IS+I   GL EPI++
Sbjct: 403  IKDPRDYFDSQQANAIKALGDAETGIRQLKFSVSKEEAFCSLKDSISEINSQGLIEPIIS 462

Query: 518  QEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSY 339
             EVALKV   L+QNISSTK+ LG NPHESVLD LP  TK ELL HWTS+QELLKHFWSSY
Sbjct: 463  PEVALKVFNGLSQNISSTKYYLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSY 522

Query: 338  PITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDA 159
            PITTKY Y KVTRLKDAMSQ+YPKLQEIKESVQSD RHQVSLLV PMLQALDAAFAHYDA
Sbjct: 523  PITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDA 582

Query: 158  DVQRRSAKSGERPNGFV 108
            D+Q+RSAKSGERPNGFV
Sbjct: 583  DIQKRSAKSGERPNGFV 599


>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Solanum lycopersicum]
          Length = 599

 Score =  723 bits (1867), Expect = 0.0
 Identities = 361/497 (72%), Positives = 416/497 (83%)
 Frame = -1

Query: 1598 EAGRAMPEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRK 1419
            E G+A  E    P ++EQLS  E  RRIKLLQENSELQ LH++ V   IL++ EFWA RK
Sbjct: 104  EIGKATSEKPAVP-HDEQLSATEMGRRIKLLQENSELQNLHRELVIAGILSETEFWAARK 162

Query: 1418 KLLDKNDSRTPKQRLALKNEMWTVKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLS 1239
            KLL++++++ PKQR+ALKN+MW+VKPLSDGQ+NRVTFNLTPE+IHQIFAEKPAVRQAYL 
Sbjct: 163  KLLEQSENKKPKQRVALKNDMWSVKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLK 222

Query: 1238 FVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRR 1059
            FVP KMSEKEFWTKYSRAEYLHST+N+V            AVFLK+DDML SEARRKIRR
Sbjct: 223  FVPGKMSEKEFWTKYSRAEYLHSTKNIVAAAAEAAEDEELAVFLKQDDMLVSEARRKIRR 282

Query: 1058 VDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVV 879
            VDPT+DMEAD+GDDY+HLPDHGLP  E K++LE  YEP++RSFSQ LNQHAAVVLQGRV+
Sbjct: 283  VDPTLDMEADEGDDYMHLPDHGLPQGETKEILEPQYEPFKRSFSQYLNQHAAVVLQGRVI 342

Query: 878  DVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLS 699
            DVELGDTRSVAEA +R+ QAE + E+S+ N  RE   ++S++AEIEDLQGP+DP VA LS
Sbjct: 343  DVELGDTRSVAEAFTRTNQAEQATEVSDENAYRERVKKVSRVAEIEDLQGPRDPPVALLS 402

Query: 698  IKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMN 519
            IKDPRDYFDSQQANA+KALGD  +G + LK  VS  EA+ SL+D IS+I   GL EPI++
Sbjct: 403  IKDPRDYFDSQQANAIKALGDAETGIRQLKFRVSKEEAFCSLKDSISEINSQGLIEPIIS 462

Query: 518  QEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSY 339
             EVALKV   L+QNISSTK++LG NPHESVLD LP  TK ELL HWTS+QELLKHFWSSY
Sbjct: 463  PEVALKVFNLLSQNISSTKYHLGKNPHESVLDQLPSATKNELLLHWTSIQELLKHFWSSY 522

Query: 338  PITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDA 159
            PITTKY Y KVTRLKDAMSQ+YPKLQEIKESVQSD RHQVSLLV PMLQALDAAFAHYDA
Sbjct: 523  PITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSDVRHQVSLLVQPMLQALDAAFAHYDA 582

Query: 158  DVQRRSAKSGERPNGFV 108
            D+Q+RSA+SGERPNGFV
Sbjct: 583  DLQKRSARSGERPNGFV 599


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  698 bits (1802), Expect = 0.0
 Identities = 352/499 (70%), Positives = 414/499 (82%), Gaps = 1/499 (0%)
 Frame = -1

Query: 1601 AEAGRAMPEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATR 1422
            +EA +A  E S   L +EQLS  E ERRIKLL+E+SELQKLHKQFV   +LT+AEFWATR
Sbjct: 104  SEASKAGSEQSAVKLFDEQLSTIEMERRIKLLREDSELQKLHKQFVLSGVLTEAEFWATR 163

Query: 1421 KKLLDKNDSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAY 1245
            KKLLD N SRT KQR+  K+ M + +KPL+DG++NRVTFNLTPEIIHQIFAEKPAV QA+
Sbjct: 164  KKLLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAF 223

Query: 1244 LSFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKI 1065
            L+FVPNKM+EK+FW KY RAEYLH TRN V            AVFLK DD+LA+EARRKI
Sbjct: 224  LNFVPNKMTEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKI 283

Query: 1064 RRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGR 885
            RRVDPT+DMEAD+GDDY+HLPDHG+  D  K++++  YE YRR+ SQDLN+HAAVVL+GR
Sbjct: 284  RRVDPTLDMEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGR 343

Query: 884  VVDVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAP 705
             +DVEL DTR+VAEAL++SK+ E +NE S+ ++ RE  +RIS+M EIEDLQ P+D   A 
Sbjct: 344  PIDVELEDTRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAA 403

Query: 704  LSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPI 525
            L IKDPRDYFDSQQANALK LGDT +G+K +K S+S+ EAYGSLR  IS+I+  GLS+PI
Sbjct: 404  LCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGFISEIKSVGLSDPI 463

Query: 524  MNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWS 345
            +  ++ALKVL  LTQNISSTKF+LG NP ESVLD LP +TKEELLHHWTS+QELL+HFWS
Sbjct: 464  VKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWS 523

Query: 344  SYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHY 165
            SYPITT YLYTK +RLKDAMSQ+YPKLQEIKESVQSDFRHQVSLLV PMLQALDAAFAHY
Sbjct: 524  SYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHY 583

Query: 164  DADVQRRSAKSGERPNGFV 108
            DAD Q+RSA+SGERPNGFV
Sbjct: 584  DADQQKRSARSGERPNGFV 602


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  629 bits (1623), Expect = e-178
 Identities = 334/540 (61%), Positives = 396/540 (73%), Gaps = 44/540 (8%)
 Frame = -1

Query: 1601 AEAGRAMPEASVAPLNNEQLSRAETERRIKLLQEN------------------------- 1497
            +EA +A  E S   L +EQLS  E ERRIKLL+E+                         
Sbjct: 104  SEASKAGSEQSAVKLFDEQLSTIEMERRIKLLREDRHSVPEEKFGVLLLKGILPLFGETI 163

Query: 1496 ------------------SELQKLHKQFVFGNILTDAEFWATRKKLLDKNDSRTPKQRLA 1371
                              SELQKLHKQFV   +LT+AEFWATRKKLLD N SRT KQR+ 
Sbjct: 164  IAMKLIDSGIASKVKWDCSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVG 223

Query: 1370 LKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKY 1194
             K+ M + +KPL+DG++NRVTFNLTPEIIHQIFAEKPAV QA+L+FVPNKM+EK+FW KY
Sbjct: 224  FKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKY 283

Query: 1193 SRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDY 1014
             RAEYLH TRN V            AVFLK DD+LASEARRKIRRVDPT+DMEAD+GDDY
Sbjct: 284  CRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTLDMEADQGDDY 343

Query: 1013 IHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALS 834
            +HLPDHG+  D  K++++  YE YRR+ SQDLN+HAAVVL+GR +DVEL DTR+VAEAL+
Sbjct: 344  MHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALA 403

Query: 833  RSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANA 654
            +SK+ E +NE S+ ++ RE  +RIS+M EIEDLQ P+D   A L IKDPRDYFDSQQANA
Sbjct: 404  KSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANA 463

Query: 653  LKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNI 474
            LK LGDT +G+K +K S+SS EAYGSLR  IS+I+  GLS+PI+  ++ALKVL  LTQNI
Sbjct: 464  LKTLGDTLAGSKQIKCSLSSQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNI 523

Query: 473  SSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLK 294
            SSTKF+LG NP ESVLD LP +TKEELLHHWTS+QELL+HFWSSYPITT YLYTK +RLK
Sbjct: 524  SSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLK 583

Query: 293  DAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNG 114
            DAMSQ+YPKLQEIKESVQSDFRHQVSLLV PMLQ         +   +RR ++  E P G
Sbjct: 584  DAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQ------RRRETLKRRRRSEPQEGPGG 637


>ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555944|gb|ESR65958.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 564

 Score =  596 bits (1537), Expect = e-168
 Identities = 311/499 (62%), Positives = 381/499 (76%), Gaps = 2/499 (0%)
 Frame = -1

Query: 1598 EAGRAMPEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRK 1419
            E   A  E S   L +EQLS  E + RIKLLQENSELQKLH+QFV GNILT+AEFWA RK
Sbjct: 72   ETPNAALEKSAVKLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARK 131

Query: 1418 KLLDKNDSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYL 1242
            KLLD++ S+  KQR+  K+ M + ++P +DG++N+VTF+LTPEII QIFAEKPAV +A+L
Sbjct: 132  KLLDRDPSKKSKQRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFL 191

Query: 1241 SFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIR 1062
            +FVPNKM+E EFWTKY RAEYL  T+N              AVFLK DD+LA+E R+KIR
Sbjct: 192  NFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIR 251

Query: 1061 RVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRV 882
            RVDPT+DMEAD+GDDY HLPDHG+  D  K+  E   E YRR+  QDLN+HAAVVL+GR 
Sbjct: 252  RVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRT 311

Query: 881  VDVELGD-TRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAP 705
            +DVE  D TR++AEAL+RSK+    NE ++ N   E  DR  ++AEIEDLQ P    +AP
Sbjct: 312  IDVEREDSTRALAEALARSKRG---NEGADNNANEERLDRTPRVAEIEDLQAPHCLPLAP 368

Query: 704  LSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPI 525
            LSIKD R+YFDSQQAN LKA  D+ +    +K S+S  EAYGS+RD IS+I+  GLS+PI
Sbjct: 369  LSIKDAREYFDSQQANTLKASRDSQAS---MKCSLSRQEAYGSVRDAISEIKDMGLSDPI 425

Query: 524  MNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWS 345
            +N EVALKV   LT NISS K++LG NP E+VLD LP  TKE+LL+HW S+QELLKHFWS
Sbjct: 426  VNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWS 485

Query: 344  SYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHY 165
            SYPITT YLY+KV RLKDA+S +YP+L+E+KES+ +D RHQVSLLV PM QALDAA  HY
Sbjct: 486  SYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHY 545

Query: 164  DADVQRRSAKSGERPNGFV 108
            DAD+Q+RSAKSGE+PNG+V
Sbjct: 546  DADLQKRSAKSGEKPNGYV 564


>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555943|gb|ESR65957.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 597

 Score =  596 bits (1537), Expect = e-168
 Identities = 311/499 (62%), Positives = 381/499 (76%), Gaps = 2/499 (0%)
 Frame = -1

Query: 1598 EAGRAMPEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRK 1419
            E   A  E S   L +EQLS  E + RIKLLQENSELQKLH+QFV GNILT+AEFWA RK
Sbjct: 105  ETPNAALEKSAVKLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARK 164

Query: 1418 KLLDKNDSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYL 1242
            KLLD++ S+  KQR+  K+ M + ++P +DG++N+VTF+LTPEII QIFAEKPAV +A+L
Sbjct: 165  KLLDRDPSKKSKQRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFL 224

Query: 1241 SFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIR 1062
            +FVPNKM+E EFWTKY RAEYL  T+N              AVFLK DD+LA+E R+KIR
Sbjct: 225  NFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIR 284

Query: 1061 RVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRV 882
            RVDPT+DMEAD+GDDY HLPDHG+  D  K+  E   E YRR+  QDLN+HAAVVL+GR 
Sbjct: 285  RVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRT 344

Query: 881  VDVELGD-TRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAP 705
            +DVE  D TR++AEAL+RSK+    NE ++ N   E  DR  ++AEIEDLQ P    +AP
Sbjct: 345  IDVEREDSTRALAEALARSKRG---NEGADNNANEERLDRTPRVAEIEDLQAPHCLPLAP 401

Query: 704  LSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPI 525
            LSIKD R+YFDSQQAN LKA  D+ +    +K S+S  EAYGS+RD IS+I+  GLS+PI
Sbjct: 402  LSIKDAREYFDSQQANTLKASRDSQAS---MKCSLSRQEAYGSVRDAISEIKDMGLSDPI 458

Query: 524  MNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWS 345
            +N EVALKV   LT NISS K++LG NP E+VLD LP  TKE+LL+HW S+QELLKHFWS
Sbjct: 459  VNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWS 518

Query: 344  SYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHY 165
            SYPITT YLY+KV RLKDA+S +YP+L+E+KES+ +D RHQVSLLV PM QALDAA  HY
Sbjct: 519  SYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHY 578

Query: 164  DADVQRRSAKSGERPNGFV 108
            DAD+Q+RSAKSGE+PNG+V
Sbjct: 579  DADLQKRSAKSGEKPNGYV 597


>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Citrus sinensis]
          Length = 597

 Score =  590 bits (1522), Expect = e-166
 Identities = 309/499 (61%), Positives = 378/499 (75%), Gaps = 2/499 (0%)
 Frame = -1

Query: 1598 EAGRAMPEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRK 1419
            E   A  E S   L +EQLS  E + RIKLLQENSELQKLH+QFV GNILT+AEFWA RK
Sbjct: 105  ETPNAALEKSAIKLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARK 164

Query: 1418 KLLDKNDSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYL 1242
            KLLD + S+  KQR+  K+ M + ++P +DG++N+VTF+LTPEII QIFAEKPAV +A+L
Sbjct: 165  KLLDIDPSKKSKQRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFL 224

Query: 1241 SFVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIR 1062
            +FVPNKM+E EFWTKY RAEYL  T+N              AVFLK DD+LA+E R+KIR
Sbjct: 225  NFVPNKMTEMEFWTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIR 284

Query: 1061 RVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRV 882
            RVDPT+DMEAD+GDDY HLPDHG+  D  K+  E   E YRR+  QDLN+HAAVVL+GR 
Sbjct: 285  RVDPTLDMEADEGDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRT 344

Query: 881  VDVELGD-TRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAP 705
            +DVE  D TR++AEAL+RSK+    NE ++ N   E  DR  ++AEIEDLQ P    +AP
Sbjct: 345  IDVEREDSTRALAEALARSKRG---NEGADNNANEERLDRTPRVAEIEDLQAPHCLPLAP 401

Query: 704  LSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPI 525
            LSIKD R+YFDSQQAN LKA  D  +    +K S+S  EAY S+RD IS+I+  GLS+PI
Sbjct: 402  LSIKDAREYFDSQQANTLKASRDAQAS---MKCSLSKQEAYRSVRDAISEIKDMGLSDPI 458

Query: 524  MNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWS 345
            +N EVALKV   LT NISS K++LG NP E+VLD LP  TKE+LL+HW S+QELLKHFWS
Sbjct: 459  VNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWS 518

Query: 344  SYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHY 165
            SYPITT YLY+KV RLKDA+S +YP+L+E+KES+ +D RHQVSLLV PM QALDAA  HY
Sbjct: 519  SYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHY 578

Query: 164  DADVQRRSAKSGERPNGFV 108
            DAD+Q+RSAKSGE+PNG++
Sbjct: 579  DADLQKRSAKSGEKPNGYI 597


>gb|EMJ24087.1| hypothetical protein PRUPE_ppa003591mg [Prunus persica]
          Length = 563

 Score =  578 bits (1491), Expect = e-162
 Identities = 306/496 (61%), Positives = 369/496 (74%), Gaps = 2/496 (0%)
 Frame = -1

Query: 1595 AGRAMPEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKK 1416
            A +   E S   L +EQLS AE + R+KLLQE+SELQKLH QFV   +LT++EFWATRKK
Sbjct: 75   AAKTTSEKSGVTLPDEQLSTAEMQLRMKLLQEDSELQKLHMQFVISGVLTESEFWATRKK 134

Query: 1415 LLDKNDSRTPKQRLALKNEM-WTVKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLS 1239
            LLD +     KQR+  ++ M    KP++DG+ N+VTFNLTPEI +QIFA KPAV QA+L+
Sbjct: 135  LLDGDSRTKSKQRVGFRSSMILDTKPMTDGRMNKVTFNLTPEIKYQIFALKPAVHQAFLT 194

Query: 1238 FVPNKMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRR 1059
             VP+KM+EK+FWTKY RAEYLHSTRN V            A+FLK D +LASEARRKIRR
Sbjct: 195  LVPSKMTEKDFWTKYFRAEYLHSTRNAVAAAAEAAEDEELAIFLKEDAILASEARRKIRR 254

Query: 1058 VDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVV 879
            VDPT+DMEAD+GDDY HLPDHG+  D  KDV E   E YRR+ SQDLN+  AVVLQGR V
Sbjct: 255  VDPTLDMEADQGDDYTHLPDHGIFRDGSKDVTELQNELYRRTLSQDLNRQGAVVLQGRTV 314

Query: 878  DVELGDTRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLS 699
            DV+L D R+VAEAL +S++       S+ + E+E  DRI++M EIEDLQ   D  VA L 
Sbjct: 315  DVDLEDPRTVAEALMQSRRE------SDESAEQERLDRITRMTEIEDLQEHHDHPVAQLC 368

Query: 698  IKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMN 519
            IKDPRDYFD+QQ NALK L D+ +G +  K S+++ EAYGSLR+ IS I+  GL    + 
Sbjct: 369  IKDPRDYFDTQQVNALKTLDDSRTGTEQKKCSLTTEEAYGSLREAISKIKSIGLKNSTVA 428

Query: 518  QEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSY 339
             E+A+ VL  LTQNISSTK+ LG NP +SVLD LP  TKEELLHHW S+QELL+HFWSSY
Sbjct: 429  PEIAITVLNGLTQNISSTKYQLGKNPQDSVLDSLPNKTKEELLHHWISIQELLRHFWSSY 488

Query: 338  PITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDA 159
            PITT YL TKV RLKDAMSQ+Y +L+EIK   QSDFRHQVSLLV PM QALDAAF H+DA
Sbjct: 489  PITTTYLSTKVGRLKDAMSQIYRQLEEIK---QSDFRHQVSLLVRPMHQALDAAFQHFDA 545

Query: 158  DVQRRSAKS-GERPNG 114
            D+Q+R+A+S GE PNG
Sbjct: 546  DLQKRAARSGGETPNG 561


>gb|EOY33211.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins), putative isoform 1
            [Theobroma cacao]
          Length = 646

 Score =  577 bits (1488), Expect = e-162
 Identities = 307/531 (57%), Positives = 374/531 (70%), Gaps = 50/531 (9%)
 Frame = -1

Query: 1553 NEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKNDSRTPKQRL 1374
            +EQLS AE E RIKLL+E+SELQKLHKQFV   +LT+AEFWATRKKLLD+  ++  KQRL
Sbjct: 115  DEQLSAAEMELRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRL 174

Query: 1373 ALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTK 1197
              K+ M + +KP +DG++N+VTFNLTPEII QIFAEKPAV +A+L++VPNKMSE++FWTK
Sbjct: 175  GFKSAMISDIKPSTDGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTK 234

Query: 1196 YSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDD 1017
            Y RAEYLHST+N V            AVFLK+DD+LASE+R KIRRVDPT+DM+AD+GDD
Sbjct: 235  YFRAEYLHSTKNSVAAAAEAAEDEELAVFLKQDDILASESRSKIRRVDPTLDMDADEGDD 294

Query: 1016 YIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEAL 837
            Y HLPDHG+  D  K+V E+  E YRR+ SQD+N+HAAVVL+GR VDVEL DTRSVAEAL
Sbjct: 295  YTHLPDHGIFRDGSKEVTESENELYRRTLSQDINRHAAVVLEGRAVDVELEDTRSVAEAL 354

Query: 836  SRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQAN 657
            +RSKQ   +   S  +  RE  DR+S+M EIEDLQ P +  +APL IKDPRDYFDSQQ N
Sbjct: 355  ARSKQESSTKGESYGDTSRERLDRVSRMTEIEDLQAPNNLPLAPLCIKDPRDYFDSQQVN 414

Query: 656  ALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQN 477
            AL+  GD  +G + +K S+SS E YGSLR+ IS I+  GL +PI+  EVA +V  +LTQ+
Sbjct: 415  ALRTSGDELAGTEQIKCSLSSQEVYGSLRESISVIKAMGLKDPIVKPEVAHQVFDALTQS 474

Query: 476  ISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRL 297
            IS+TK+N+G NP ESVLD LPK  KEELLHHWTS+ ELL+HFW+SYPITT YLYTKV   
Sbjct: 475  ISTTKYNIGKNPQESVLDRLPKKIKEELLHHWTSILELLRHFWASYPITTSYLYTKVNAA 534

Query: 296  KDAMSQVYPKLQ------------------------------------------------ 261
                   Y KL+                                                
Sbjct: 535  LVLTLLSYQKLEAGKQTEGCHVTYLSTARVVLSNYPQVPFISSLLFYLLGSSDAKASYVW 594

Query: 260  -EIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQRRSAKSGERPNGF 111
             EIK SV SD RHQVSLL+ PM QALDAA  HY+AD+Q+RSA+SGERPNG+
Sbjct: 595  MEIKGSVPSDLRHQVSLLIRPMHQALDAAIQHYEADMQKRSARSGERPNGY 645


>ref|NP_175971.3| probable RNA polymerase II transcription factor B subunit 1-1
            [Arabidopsis thaliana]
            gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
            Full=Probable RNA polymerase II transcription factor B
            subunit 1-1; AltName: Full=General transcription and DNA
            repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
            Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332195172|gb|AEE33293.1| probable RNA polymerase II
            transcription factor B subunit 1-1 [Arabidopsis thaliana]
          Length = 591

 Score =  577 bits (1487), Expect = e-162
 Identities = 299/492 (60%), Positives = 373/492 (75%), Gaps = 1/492 (0%)
 Frame = -1

Query: 1580 PEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKN 1401
            P  SV   ++EQLS  E E R KLL+ENSELQ+LHKQFV   +LT+ EFWATRKKLL K+
Sbjct: 106  PNKSVVSTSSEQLSIKELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKD 165

Query: 1400 DSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNK 1224
              R  KQ+L LK+ M + +KP +DG++NRVTFNLTPEII QIFAEKPAVRQA++++VP+K
Sbjct: 166  SIRKSKQQLGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSK 225

Query: 1223 MSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTV 1044
            M+EK+FWTKY RAEYL+ST+N              AVFLK D++LA E R KIRRVDPT+
Sbjct: 226  MTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRHKIRRVDPTL 285

Query: 1043 DMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELG 864
            DMEAD+GDDY HL DHG+  D   DV+E   + ++RS  QDLN+HAAVVL+GR +DVE  
Sbjct: 286  DMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSLLQDLNRHAAVVLEGRSIDVESE 345

Query: 863  DTRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPR 684
            DTR VAEAL+R KQ   ++  + ++  +E  +R+S++A +EDLQ PQ+  +APLSIKDPR
Sbjct: 346  DTRIVAEALTRVKQVSKADGETTKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPR 405

Query: 683  DYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVAL 504
            DYF+SQQ N L    +   GAK LK +V  HEAYG L++ I +IR TGLS+P++  EV+ 
Sbjct: 406  DYFESQQGNVL----NVPRGAKGLKRNV--HEAYGLLKESILEIRATGLSDPLIKPEVSF 459

Query: 503  KVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTK 324
            +V  SLT+ I++ K   G NP ES LD LPK TK+E+LHHWTS+QELLKHFWSSYPITT 
Sbjct: 460  EVFSSLTRTIATAKNINGKNPRESFLDRLPKSTKDEVLHHWTSIQELLKHFWSSYPITTT 519

Query: 323  YLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQRR 144
            YL+TKV +LKDAMS  Y KL+ +KESVQSD RHQVSLLV PM QALDAAF HY+ D+QRR
Sbjct: 520  YLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFHHYEVDLQRR 579

Query: 143  SAKSGERPNGFV 108
            +AKSGERPNG+V
Sbjct: 580  TAKSGERPNGYV 591


>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
            lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
            ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
          Length = 592

 Score =  576 bits (1484), Expect = e-161
 Identities = 300/493 (60%), Positives = 375/493 (76%), Gaps = 2/493 (0%)
 Frame = -1

Query: 1580 PEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKN 1401
            P  SV   ++EQLS  E E R KLL+ENSELQ+LHKQFV   +LT+ EFWATRKKLL K+
Sbjct: 106  PNKSVVSTSSEQLSIKELELRFKLLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGKD 165

Query: 1400 DSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNK 1224
              R  KQ++ LK+ M + +KP +DG++NRVTFNLTPEII QIFAEKPAVRQA++++VP+K
Sbjct: 166  SIRKSKQQVGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSK 225

Query: 1223 MSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTV 1044
            M+EK+FWTKY RAEYL+ST+N              AVFLK D++LA E R+KIRRVDPT+
Sbjct: 226  MTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRQKIRRVDPTL 285

Query: 1043 DMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELG 864
            DMEAD+GDDY HL DHG+  D   DV+E   + +RRS  QDLN+HAAVVL+GR +DVE  
Sbjct: 286  DMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFRRSLLQDLNRHAAVVLEGRSIDVESE 345

Query: 863  DTRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPR 684
            DTR VAEAL+R KQ   ++  + ++   E  +R+S++A +EDLQ PQ+  +APLSIKDPR
Sbjct: 346  DTRIVAEALTRVKQVSKADGETTKDANLERLERMSRLAGMEDLQAPQNFPLAPLSIKDPR 405

Query: 683  DYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVAL 504
            DYF+SQQ N L    +   GAK LK +V  HEAYG L++ I +IR TGLS+P++  EV+ 
Sbjct: 406  DYFESQQGNVL----NVPRGAKGLKRNV--HEAYGLLKESILEIRATGLSDPLIRPEVSF 459

Query: 503  KVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTK 324
            +V  SLT+ IS+ K  +G NP ES LD LPK TK+E+LHHWTS+QELL+HFWSSYPITT 
Sbjct: 460  EVFSSLTRTISTAKNIIGKNPRESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITTT 519

Query: 323  YLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQRR 144
            YL+TKV +LKDAMS  Y KL+ +KESVQSD RHQVSLLV PM QALDAAF HY+AD+QRR
Sbjct: 520  YLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFQHYEADLQRR 579

Query: 143  SAKS-GERPNGFV 108
            +AKS GERPNG+V
Sbjct: 580  TAKSGGERPNGYV 592


>ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Capsella rubella]
            gi|482575779|gb|EOA39966.1| hypothetical protein
            CARUB_v10008654mg [Capsella rubella]
          Length = 593

 Score =  573 bits (1477), Expect = e-161
 Identities = 297/494 (60%), Positives = 373/494 (75%), Gaps = 3/494 (0%)
 Frame = -1

Query: 1580 PEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKN 1401
            P     P + EQLS  E E R KLL+ENSELQ+LHKQFV   +LT+ EFWATRKKLL K+
Sbjct: 106  PNKPAVPASTEQLSIRELELRFKLLKENSELQRLHKQFVESKVLTEDEFWATRKKLLGKD 165

Query: 1400 DSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNK 1224
              R  KQ+L LK+ M + +KP +DG++NRVTFNLTPEII QIFAEKPAVRQA++S+VP+K
Sbjct: 166  SIRKSKQQLGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFISYVPSK 225

Query: 1223 MSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTV 1044
            M+EK+FWTKY RAEYL+ST+N              AVFLK D++LA E R+KIRRVDPT+
Sbjct: 226  MTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRQKIRRVDPTL 285

Query: 1043 DMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELG 864
            DMEAD+GDDY HL DHG+  D  +DV+E   E ++RS  QDLN+HAAVVL+GR +DV+  
Sbjct: 286  DMEADEGDDYTHLMDHGIQRDGTRDVVEPQNEQFKRSLLQDLNRHAAVVLEGRSIDVDSE 345

Query: 863  DTRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPR 684
            DTR VAEAL+R KQ   ++  + ++  +E  +R+S++A +EDLQ PQ+  +APLSIKDPR
Sbjct: 346  DTRIVAEALTRVKQVSKADGETGKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPR 405

Query: 683  DYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVAL 504
            DYF+SQQ N L A      G K LK +V  HEA+G L++ I +IR  GLS+P++  EV+ 
Sbjct: 406  DYFESQQGNVLNA----PRGTKGLKRNV--HEAFGLLKESIVEIRARGLSDPLIKPEVSF 459

Query: 503  KVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTK 324
            +V  SLT+ IS+ K  +G NP ES LD LPK TK+E+LHHWTS+QELL+HFWSSYPITT 
Sbjct: 460  EVFSSLTRTISTAKNIIGKNPRESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITTT 519

Query: 323  YLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQRR 144
            YL+TKV +LKDAMS  Y KL+ +KESVQSD RHQ+SLLV PM QALDAAF HY+AD+QRR
Sbjct: 520  YLHTKVGKLKDAMSNTYSKLEAMKESVQSDLRHQISLLVRPMQQALDAAFQHYEADLQRR 579

Query: 143  SAKS--GERPNGFV 108
            +AKS  GERPNG+V
Sbjct: 580  TAKSSGGERPNGYV 593


>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
            gi|548861733|gb|ERN19104.1| hypothetical protein
            AMTR_s00061p00135540 [Amborella trichopoda]
          Length = 626

 Score =  568 bits (1464), Expect = e-159
 Identities = 288/476 (60%), Positives = 361/476 (75%), Gaps = 1/476 (0%)
 Frame = -1

Query: 1556 NNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKNDSRTPKQR 1377
            ++ QLS AE E+R+ LL+E+SELQKLH+Q V G +LT+ EFWATRK LLD    +  KQR
Sbjct: 123  HDNQLSMAEMEQRMNLLREDSELQKLHRQLVIGGVLTETEFWATRKNLLDDAAHKASKQR 182

Query: 1376 LALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWT 1200
               K+ M   V+PL+DG++N+VTF+LTPEIIHQIFAEKPAV QA+L FVP+KMSE++FWT
Sbjct: 183  AGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAEKPAVHQAFLKFVPSKMSERDFWT 242

Query: 1199 KYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTVDMEADKGD 1020
            KY RAEYLH T+N V            AVFLK DD+LASEARRKIRRVDPTVDM AD GD
Sbjct: 243  KYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTVDMAADLGD 302

Query: 1019 DYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEA 840
            DY HLP HG+  D  K+ +++  E  +R+  QDLN+HAAVVL+GR +DVELGDTR+VAEA
Sbjct: 303  DYSHLPGHGILRDGSKESVDSESELPKRTLLQDLNRHAAVVLEGRTLDVELGDTRTVAEA 362

Query: 839  LSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQA 660
            L+RSKQAE++ E S+    ++  +R+S+M EIEDLQ P+    APL IKDPR+YFDSQ+A
Sbjct: 363  LARSKQAEVATETSDETENQKRLERVSQMTEIEDLQAPRSLPYAPLCIKDPREYFDSQRA 422

Query: 659  NALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQ 480
            NA KA GDTGSG       +S+ +AY SLR  I +++  G  +PI+  ++ALKVL  + Q
Sbjct: 423  NAFKATGDTGSGVNKDCCHLSTKQAYESLRAQILEVKSVGFKDPIVIPDLALKVLNDVNQ 482

Query: 479  NISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTR 300
             +SST   LG NP  +VLD LP  TKEELL HWTS+QELL+HFWSSYP+TT +L+ KV R
Sbjct: 483  QLSSTDPQLGKNPQATVLDMLPHRTKEELLQHWTSIQELLRHFWSSYPLTTTFLHAKVNR 542

Query: 299  LKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQRRSAKS 132
            +KDAM+Q+Y KL E+KESVQS+FRHQVSLLV PMLQ LD AF HYDA++Q+RS K+
Sbjct: 543  VKDAMAQIYRKLPEVKESVQSEFRHQVSLLVKPMLQVLDEAFKHYDAEMQKRSTKT 598


>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
            communis] gi|223529828|gb|EEF31761.1| TFIIH basal
            transcription factor complex subunit, putative [Ricinus
            communis]
          Length = 597

 Score =  560 bits (1444), Expect = e-157
 Identities = 299/494 (60%), Positives = 368/494 (74%), Gaps = 4/494 (0%)
 Frame = -1

Query: 1580 PEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKN 1401
            P+A   P  ++Q S  E   R+ LL+EN ELQKLHKQFV   +LTD+EFWATRKKLL+  
Sbjct: 108  PDAPEVP--SDQPSTEELLLRMNLLRENLELQKLHKQFVSDRVLTDSEFWATRKKLLNGE 165

Query: 1400 DSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNK 1224
             SR  KQR+ LK+ M    KPL DGQ+N+VTFNLTPEI+ +IFAEKPAV QAYLS VPNK
Sbjct: 166  FSRKSKQRVGLKSVMLADSKPLIDGQTNKVTFNLTPEIVREIFAEKPAVHQAYLSLVPNK 225

Query: 1223 MSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTV 1044
            MSE++FWTKY RAEYL  +RN+             A+FLK DD+LASE R+KIR VDPT+
Sbjct: 226  MSERDFWTKYCRAEYLQRSRNIHAAAAEAAEDEELALFLKPDDILASETRQKIRCVDPTL 285

Query: 1043 DMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVE-L 867
            DMEAD+GDDY HLPDHG+  D  KDV+E+ +EPYRR+  QDLN+HAAVVL+G  +D E L
Sbjct: 286  DMEADQGDDYTHLPDHGIVRDGSKDVIESQHEPYRRTLLQDLNRHAAVVLEGTAIDDEQL 345

Query: 866  GDTRSVAEALSRSKQA-ELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKD 690
             DT++VA+AL+RSK+  +  N  ++ N  +E S+RIS+M EIEDLQG  D  +APL IKD
Sbjct: 346  QDTKAVADALARSKRGIKTINREADGNANQERSNRISQMMEIEDLQGSNDHHLAPLCIKD 405

Query: 689  PRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEV 510
            PRDYFDSQQA+ALK   D  SG +  + S+SS EAY SLRD I+  +  GL++PI+  E+
Sbjct: 406  PRDYFDSQQASALKNSRDIPSGTEAARCSLSSQEAYASLRDSITQTKAMGLNDPIVKPEI 465

Query: 509  ALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPIT 330
            A KVL  LT NISSTK++LG N  ESVLD LP   KEELLHHW S++ELL+H+WSSYPIT
Sbjct: 466  ATKVLSILTHNISSTKYHLGKNSRESVLDRLPNTIKEELLHHWMSIEELLRHYWSSYPIT 525

Query: 329  TKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFR-HQVSLLVHPMLQALDAAFAHYDADV 153
            T YLY KV+RLKDAMS++  +LQE+KESVQSD   H  SL + P   AL+AA  HYDAD+
Sbjct: 526  TAYLYAKVSRLKDAMSKIDSQLQEMKESVQSDLXFHATSLGIVP---ALEAAMQHYDADL 582

Query: 152  QRRSAKSGERPNGF 111
            Q+RSAKS ERPNG+
Sbjct: 583  QKRSAKSAERPNGY 596


>ref|XP_006392607.1| hypothetical protein EUTSA_v10011333mg [Eutrema salsugineum]
            gi|557089185|gb|ESQ29893.1| hypothetical protein
            EUTSA_v10011333mg [Eutrema salsugineum]
          Length = 597

 Score =  553 bits (1426), Expect = e-155
 Identities = 290/498 (58%), Positives = 370/498 (74%), Gaps = 6/498 (1%)
 Frame = -1

Query: 1583 MPEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDK 1404
            +P+ S    + EQLS AE E R K+L+ENSELQ+LHKQFV   +LT+ EFWATRKKLL +
Sbjct: 106  VPKKSAVSTSTEQLSIAELELRFKVLRENSELQRLHKQFVESKVLTEDEFWATRKKLLGQ 165

Query: 1403 NDSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPN 1227
              +   KQ++ LK+ M + +KP +DG++NRVTFNLT EII QIFAEKPAVRQA++++VP+
Sbjct: 166  VSTGKSKQQVGLKSMMVSGIKPSTDGRTNRVTFNLTSEIIFQIFAEKPAVRQAFINYVPS 225

Query: 1226 KMSEKEFWTKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPT 1047
            KM+EK+FWTKY RAEYL+ST+N              AVFLK D++LA E R+KIRRVDPT
Sbjct: 226  KMTEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRQKIRRVDPT 285

Query: 1046 VDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVEL 867
            +DMEAD+GDDY HL DHG+  D  KDV+E+  + +RRS  QDLN+H+AVVL+GR +DVE 
Sbjct: 286  LDMEADQGDDYSHLMDHGIQRDGTKDVVESQNDQFRRSLLQDLNRHSAVVLEGRSIDVES 345

Query: 866  GDTRSVAEALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDP 687
             DTR VAEAL+R+KQ   ++  + ++  ++  +R+S+ AE+EDLQ PQ+  +APLSIKDP
Sbjct: 346  EDTRVVAEALTRAKQVSKADGETTKDANQDRLERMSRTAEMEDLQAPQNFPLAPLSIKDP 405

Query: 686  RDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVA 507
            RDYF+SQQ N L    +   GA  L  +V  HEAYG L++ I +IR  GLS P++  EV+
Sbjct: 406  RDYFESQQGNVL----NEPRGAGALNRNV--HEAYGLLKESILEIRTKGLSYPLIKSEVS 459

Query: 506  LKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITT 327
             +V  SLTQ IS+ K  +G NP ES LD LPK TK+E+LHHWTS+QELL+HFWSSYPITT
Sbjct: 460  FEVFSSLTQTISTAKNIIGKNPRESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITT 519

Query: 326  KYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQR 147
             YL+TKV +LKDAMS  Y +L  +K+SVQSD RHQVSLLV PM QALDAAF HY+ D+QR
Sbjct: 520  TYLHTKVGKLKDAMSNTYSQLDAMKQSVQSDLRHQVSLLVRPMQQALDAAFQHYETDLQR 579

Query: 146  RSAK-----SGERPNGFV 108
            R+AK     S ERPNG V
Sbjct: 580  RTAKSVGGSSSERPNGGV 597


>ref|XP_002310512.2| transcription factor-related family protein [Populus trichocarpa]
            gi|550334091|gb|EEE90962.2| transcription factor-related
            family protein [Populus trichocarpa]
          Length = 603

 Score =  550 bits (1418), Expect = e-154
 Identities = 292/503 (58%), Positives = 368/503 (73%), Gaps = 6/503 (1%)
 Frame = -1

Query: 1601 AEAGRAMPEASVAPLNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATR 1422
            ++ G        + + +EQ S  E   R+ +LQENSELQ LHK+FV   ILT+AEFWATR
Sbjct: 100  SKTGETPKPIDTSEVPSEQPSTEELLLRMNMLQENSELQNLHKRFVSDGILTEAEFWATR 159

Query: 1421 KKLLDKNDSRTPKQRLALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAY 1245
            KKLL  N S+  KQR  LK+ + +  KP +DG++N+VTF LTPEI+ ++FAEKPAV +AY
Sbjct: 160  KKLLGGNFSKKSKQRTGLKSFVLSDTKPSTDGRTNKVTFTLTPEIVREVFAEKPAVHRAY 219

Query: 1244 LSFVPNKMSEKEFWTKYSRAEYLHSTRNV---VXXXXXXXXXXXXAVFLKRDDMLASEAR 1074
            L  VP KMSE++FW+KY RAEYL   +N                 A+FLK DD+LASE R
Sbjct: 220  LDLVPKKMSERDFWSKYCRAEYLQHAKNANAAAAAAAEAAEDEELALFLKPDDILASETR 279

Query: 1073 RKIRRVDPTVDMEADKGDDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVL 894
            RKIR VDPT++MEAD+GDDY HLPDHG+  D  K++ E+ +E Y R+ SQ+LN+HAAVVL
Sbjct: 280  RKIRCVDPTLNMEADEGDDYTHLPDHGIVRDGSKEITESQHELYIRTLSQELNRHAAVVL 339

Query: 893  QGRVVDVE-LGDTRSVAEALSRSKQAE-LSNEISNRNLERELSDRISKMAEIEDLQGPQD 720
            QG  +D E L DT++VAEAL +SKQ +  SNE ++ N  ++   RISKM EI+DLQ   D
Sbjct: 340  QGTPIDEEQLKDTQTVAEALKQSKQGQNASNEETDMNANQDRLSRISKMMEIDDLQASSD 399

Query: 719  PAVAPLSIKDPRDYFDSQQANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTG 540
              +APLSIKDPRDYFDSQQA ALK   DT  G  P+K  +S+ E+Y SLRD IS I+ TG
Sbjct: 400  LPLAPLSIKDPRDYFDSQQATALKNSRDTSIGTDPVKRILSAEESYASLRDSISLIKTTG 459

Query: 539  LSEPIMNQEVALKVLGSLTQNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELL 360
            L +PI+  EVA+KVL  LT NISSTK++ G N   SVLD LP   KEELL+HWTS+QELL
Sbjct: 460  LVDPIIKPEVAVKVLSVLTHNISSTKYDTGKNHGLSVLDTLPNTIKEELLYHWTSLQELL 519

Query: 359  KHFWSSYPITTKYLYTKVTRLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDA 180
            KH+WSSYPITT YLYTKV+RLKDAMS++  +LQE+KESVQSD RHQV+LL+ PM QAL+A
Sbjct: 520  KHYWSSYPITTTYLYTKVSRLKDAMSKIDSQLQELKESVQSDLRHQVTLLLRPMQQALEA 579

Query: 179  AFAHYDADVQRRSAKSGERPNGF 111
            A  HYDA++Q+RSA+SG+R NG+
Sbjct: 580  AMQHYDAELQKRSARSGDRSNGY 602


>gb|EOY33214.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins) isoform 4, partial
            [Theobroma cacao]
          Length = 516

 Score =  547 bits (1410), Expect = e-153
 Identities = 277/432 (64%), Positives = 340/432 (78%), Gaps = 1/432 (0%)
 Frame = -1

Query: 1553 NEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKNDSRTPKQRL 1374
            +EQLS AE E RIKLL+E+SELQKLHKQFV   +LT+AEFWATRKKLLD+  ++  KQRL
Sbjct: 71   DEQLSAAEMELRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRL 130

Query: 1373 ALKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTK 1197
              K+ M + +KP +DG++N+VTFNLTPEII QIFAEKPAV +A+L++VPNKMSE++FWTK
Sbjct: 131  GFKSAMISDIKPSTDGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTK 190

Query: 1196 YSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDD 1017
            Y RAEYLHST+N V            AVFLK+DD+LASE+R KIRRVDPT+DM+AD+GDD
Sbjct: 191  YFRAEYLHSTKNSVAAAAEAAEDEELAVFLKQDDILASESRSKIRRVDPTLDMDADEGDD 250

Query: 1016 YIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEAL 837
            Y HLPDHG+  D  K+V E+  E YRR+ SQD+N+HAAVVL+GR VDVEL DTRSVAEAL
Sbjct: 251  YTHLPDHGIFRDGSKEVTESENELYRRTLSQDINRHAAVVLEGRAVDVELEDTRSVAEAL 310

Query: 836  SRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQAN 657
            +RSKQ   +   S  +  RE  DR+S+M EIEDLQ P +  +APL IKDPRDYFDSQQ N
Sbjct: 311  ARSKQESSTKGESYGDTSRERLDRVSRMTEIEDLQAPNNLPLAPLCIKDPRDYFDSQQVN 370

Query: 656  ALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQN 477
            AL+  GD  +G + +K S+SS E YGSLR+ IS I+  GL +PI+  EVA +V  +LTQ+
Sbjct: 371  ALRTSGDELAGTEQIKCSLSSQEVYGSLRESISVIKAMGLKDPIVKPEVAHQVFDALTQS 430

Query: 476  ISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRL 297
            IS+TK+N+G NP ESVLD LPK  KEELLHHWTS+ ELL+HFW+SYPITT YLYTKV RL
Sbjct: 431  ISTTKYNIGKNPQESVLDRLPKKIKEELLHHWTSILELLRHFWASYPITTSYLYTKVNRL 490

Query: 296  KDAMSQVYPKLQ 261
            KDAMS +YP+L+
Sbjct: 491  KDAMSHIYPQLE 502


>ref|XP_004496077.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Cicer arietinum]
          Length = 586

 Score =  538 bits (1386), Expect = e-150
 Identities = 277/485 (57%), Positives = 359/485 (74%), Gaps = 1/485 (0%)
 Frame = -1

Query: 1559 LNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKNDSRTPKQ 1380
            +++EQLS AE   RIKLLQE+S+LQKLHK  V    LT++EFWAT+KKLLD+++SR  KQ
Sbjct: 109  VSDEQLSPAEMTLRIKLLQEDSKLQKLHKDLVASGKLTESEFWATKKKLLDQDESRKLKQ 168

Query: 1379 RLALKNEM-WTVKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFW 1203
            R+  KN + +  KP SDG+ N+V F LTPEI +QIFA KPAV QA+L+FVP+KMSE +FW
Sbjct: 169  RIGFKNSLIFDTKPTSDGRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFW 228

Query: 1202 TKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTVDMEADKG 1023
             KY +AEY+HST+N +            AVFLK D++L +EAR+K+RRVDPT+DMEAD+G
Sbjct: 229  NKYFKAEYIHSTKNTIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQG 288

Query: 1022 DDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAE 843
            DDY HLPDHG+  D  K+  EA    YRR+  QDLN+ + VVL+G+ +D+++   R+VAE
Sbjct: 289  DDYTHLPDHGIFRDGSKETAEAQNTFYRRTLLQDLNRQSEVVLEGKTLDMDMEHPRTVAE 348

Query: 842  ALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQ 663
             L+R KQ       S+  +E E  +RISKM +IEDLQ   D   APL IKDPRDYFDSQQ
Sbjct: 349  VLARRKQE------SDGVIEEERRNRISKMTQIEDLQAQDDHRFAPLCIKDPRDYFDSQQ 402

Query: 662  ANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLT 483
             NALK+L D+ +G + ++ ++ S EAYGSLR+ IS I+  GL +P+++ EVA KVL  LT
Sbjct: 403  VNALKSLDDSLAGKEQIRCNLGSEEAYGSLRESISKIKAIGLMDPLLSPEVAFKVLNGLT 462

Query: 482  QNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTKYLYTKVT 303
            +NISSTK +LG +  ESVLD LP  TKE+LL HW   QELL+HFWSSYP+TT+ L  K  
Sbjct: 463  KNISSTKSHLGKSSQESVLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTTQNLVNKTK 522

Query: 302  RLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQRRSAKSGER 123
            R+KDA+SQ+Y KL+EIK S +SD RHQVSL+VHPM QALDAA  HYDADV++R+A+ G +
Sbjct: 523  RMKDAISQIYSKLEEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDADVRKRNAR-GTK 581

Query: 122  PNGFV 108
            PNG+V
Sbjct: 582  PNGYV 586


>ref|NP_191701.4| probable RNA polymerase II transcription factor B subunit 1-3
            [Arabidopsis thaliana]
            gi|325530300|sp|Q9M322.2|TFB1C_ARATH RecName:
            Full=Probable RNA polymerase II transcription factor B
            subunit 1-3; AltName: Full=General transcription and DNA
            repair factor IIH subunit TFB1-3; Short=AtTFB1-3;
            Short=TFIIH subunit TFB1-3 gi|332646679|gb|AEE80200.1|
            probable RNA polymerase II transcription factor B subunit
            1-3 [Arabidopsis thaliana]
          Length = 579

 Score =  538 bits (1385), Expect = e-150
 Identities = 279/473 (58%), Positives = 354/473 (74%), Gaps = 1/473 (0%)
 Frame = -1

Query: 1550 EQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKNDSRTPKQRLA 1371
            EQLS AE E R KLL+ENSELQKLHKQFV   +LT+ EFW+TRKKLL K+  R  KQ++ 
Sbjct: 111  EQLSMAEFELRFKLLRENSELQKLHKQFVESKVLTEDEFWSTRKKLLGKDSIRKSKQQMG 170

Query: 1370 LKNEMWT-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFWTKY 1194
            LK+ M + +KP +DG++NRVTFNLT EII QIFAEKPAVRQA++++VP KM+EK+FWTKY
Sbjct: 171  LKSMMVSGIKPSTDGRTNRVTFNLTSEIIFQIFAEKPAVRQAFINYVPKKMTEKDFWTKY 230

Query: 1193 SRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTVDMEADKGDDY 1014
             RAEYL+ST+N              AVFLK D++LA EAR+K+RRVDPT+DM+AD+GDDY
Sbjct: 231  FRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDEILAQEARQKMRRVDPTLDMDADEGDDY 290

Query: 1013 IHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALS 834
             HL DHG+  D   D++E   +  +RS  QDLN+HAAVVL+GR ++V+  DTR VAEAL+
Sbjct: 291  THLMDHGIQRDGTNDIIEPQNDQLKRSLLQDLNRHAAVVLEGRCINVQSEDTRIVAEALT 350

Query: 833  RSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQANA 654
            R+KQ   ++    ++  +E  +R+S+  E+EDLQ PQ+  +APLSIKDPRDYF+SQQ N 
Sbjct: 351  RAKQVSKADGEITKDANQERLERMSRATEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNI 410

Query: 653  LKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLTQNI 474
            L        GAK  K +V  HEAYG L++ I  IR TGLS+P++  EV+ +V  SLT+ I
Sbjct: 411  L----SEPRGAKASKRNV--HEAYGLLKESILVIRMTGLSDPLIKPEVSFEVFSSLTRTI 464

Query: 473  SSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTKYLYTKVTRLK 294
            S+ K  LG NP ES LD LPK TK+E++HHWTS+QEL++HFWSSYPITT YL TKV +LK
Sbjct: 465  STAKNILGKNPQESFLDRLPKSTKDEVIHHWTSIQELVRHFWSSYPITTTYLSTKVGKLK 524

Query: 293  DAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQRRSAK 135
            DAMS  Y  L  +K+SVQSD RHQVSLLV PM QALDAAF HY++D+QRR+AK
Sbjct: 525  DAMSNTYSLLDAMKQSVQSDLRHQVSLLVRPMQQALDAAFQHYESDLQRRTAK 577


>gb|ESW16172.1| hypothetical protein PHAVU_007G134900g [Phaseolus vulgaris]
          Length = 588

 Score =  531 bits (1369), Expect = e-148
 Identities = 276/485 (56%), Positives = 356/485 (73%), Gaps = 1/485 (0%)
 Frame = -1

Query: 1559 LNNEQLSRAETERRIKLLQENSELQKLHKQFVFGNILTDAEFWATRKKLLDKNDSRTPKQ 1380
            ++ EQLS AE   RIKLLQE+S+LQ+LHK+ V    LT++EFWAT+KKLLD+++SR  KQ
Sbjct: 110  ISEEQLSSAEMTLRIKLLQEDSKLQRLHKELVASGKLTESEFWATKKKLLDQDESRKLKQ 169

Query: 1379 RLALKNEM-WTVKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLSFVPNKMSEKEFW 1203
            R+  KN + +  KP+SDG+ N+V F LTPEI +QIF  KPAV QA+L+FVP+KM+E +FW
Sbjct: 170  RIGFKNSLIFDTKPMSDGRINQVKFQLTPEIKYQIFTLKPAVHQAFLNFVPSKMNEVDFW 229

Query: 1202 TKYSRAEYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLASEARRKIRRVDPTVDMEADKG 1023
             KY +AEYLHST+N V            AVFLK D++L  EAR+K+RRVDPT+DMEAD+G
Sbjct: 230  NKYFKAEYLHSTKNAVAAAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEADQG 289

Query: 1022 DDYIHLPDHGLPNDEVKDVLEAHYEPYRRSFSQDLNQHAAVVLQGRVVDVELGDTRSVAE 843
            DDY HLPDHG+  D  K++ EA    Y+R+  QDLN+  AVVL+G+ +D+E+ + R+VAE
Sbjct: 290  DDYTHLPDHGIFRDGSKEISEAQNSLYKRTLLQDLNRQGAVVLEGKTLDMEMENPRTVAE 349

Query: 842  ALSRSKQAELSNEISNRNLERELSDRISKMAEIEDLQGPQDPAVAPLSIKDPRDYFDSQQ 663
             L+R KQ   S+E+     + E  +RISKM  IEDLQ   D   APL IKDPRDYFD QQ
Sbjct: 350  ILARRKQE--SDEVVG---DEERRNRISKMTPIEDLQSQDDHRYAPLCIKDPRDYFDFQQ 404

Query: 662  ANALKALGDTGSGAKPLKSSVSSHEAYGSLRDLISDIRGTGLSEPIMNQEVALKVLGSLT 483
            ANA+K L D+  G + +  S+ S EAYGSLR  IS I+ TGL +P+ + EVALKVL  LT
Sbjct: 405  ANAVKTLDDSQPGMEQMMCSLGSEEAYGSLRASISKIQTTGLRDPLFSPEVALKVLHGLT 464

Query: 482  QNISSTKFNLGNNPHESVLDGLPKVTKEELLHHWTSVQELLKHFWSSYPITTKYLYTKVT 303
            +NISS+K++LG    ESVLD LP  TKE+LL HW   QELL+H+WSSYP+TT+ L  K  
Sbjct: 465  KNISSSKYHLGKTSQESVLDILPNTTKEKLLDHWVCSQELLRHYWSSYPVTTQNLVNKTR 524

Query: 302  RLKDAMSQVYPKLQEIKESVQSDFRHQVSLLVHPMLQALDAAFAHYDADVQRRSAKSGER 123
            RLKD++SQ+Y KL+EIK S QSD RHQVSL+VHPM QALDAA  HYDAD+++R+A+ G +
Sbjct: 525  RLKDSISQIYSKLEEIKVSAQSDLRHQVSLVVHPMQQALDAALLHYDADIRKRNAR-GSK 583

Query: 122  PNGFV 108
             NG+V
Sbjct: 584  SNGYV 588