BLASTX nr result
ID: Rehmannia22_contig00019278
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00019278
(1548 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera] 206 2e-50
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 204 6e-50
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera] 204 1e-49
gb|ACN32036.1| unknown [Zea mays] 202 4e-49
gb|ACL54615.1| unknown [Zea mays] 200 1e-48
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 193 1e-46
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 193 1e-46
emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera] 190 1e-45
emb|CAN71138.1| hypothetical protein VITISV_008660 [Vitis vinifera] 171 4e-45
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ... 184 7e-44
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 184 1e-43
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 181 6e-43
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 181 1e-42
ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488... 163 1e-42
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 180 1e-42
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc... 180 2e-42
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 178 6e-42
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 166 1e-41
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 166 1e-41
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 176 2e-41
>emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]
Length = 2220
Score = 206 bits (524), Expect = 2e-50
Identities = 126/400 (31%), Positives = 201/400 (50%), Gaps = 23/400 (5%)
Frame = +1
Query: 136 STQTQNDGGSM----------EQPIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGY 285
STQ+ + GS+ Q + + +L +NY++WK Q+ V + +
Sbjct: 847 STQSSSSSGSIGSGQSTTMASHPSYQMLNHTLLVKLDRTNYILWKSQIDNVVFANGFEDF 906
Query: 286 LTGEVKVPKEFLPETTENTKKVNPAYISWIRQDQXXXXXXXXXXXENILVSVVGSNTSME 465
+ G P+ ++ +NPA+++W RQD+ I+ ++G N+S
Sbjct: 907 IDGF-----SICPDKELSSGLINPAFVAWRRQDRTILSWLYSSLTPAIMAQIIGHNSSHS 961
Query: 466 VWKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQ 645
W LE F+S + A++MQ RL+LQ+ +KG+ M D++ KVK D LAA G + E +Q
Sbjct: 962 AWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIGEPVSEQDQ 1021
Query: 646 IMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVN 825
+M +L GLGS+YN+V+ + R ++ HSMLL+FE+RLE +SS+ F + S N
Sbjct: 1022 VMNLLGGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFEHRLEQ-QSSIKQF--SPISAN 1078
Query: 826 IATHQQNXXXXXXXXXXXXXXPNQYFNGRG-----GITNHRGSYRGRGGRFNSHGR---- 978
A+ N +Y GRG I+N+ GRGGR+ +GR
Sbjct: 1079 YASSSNNRGGG-----------RRYNGGRGQNHTPNISNYTYRGCGRGGRYGQNGRHNSN 1127
Query: 979 ----SRCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNEN 1146
+CQ+C HT C++R D+++ S ++ +N NP A V ++ N
Sbjct: 1128 SSEKPQCQLCGKFGHTVQICYHRFDISYQSSQSS----NTSPSNAGNPNSIPAMVASSNN 1183
Query: 1147 AEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNG 1266
D WY DSGA++H+T + NL ++ Y G +KV IGNG
Sbjct: 1184 LADDTWYLDSGASHHLTQSVGNLTSSSPYTGIDKVTIGNG 1223
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 204 bits (520), Expect = 6e-50
Identities = 126/395 (31%), Positives = 196/395 (49%), Gaps = 18/395 (4%)
Frame = +1
Query: 136 STQTQNDGGSMEQPIQ---PQSQLIT----CRLTESNYLVWKMQVWAAVKGYSLDGYLTG 294
++Q+ + GS + P Q++ +L +NY++W+ Q+ + + ++ G
Sbjct: 5 ASQSSSSSGSAQSSSMASIPSYQMLNYSLPVKLDRTNYILWRSQIDNVIFANGFEDFIDG 64
Query: 295 EVKVPKEFLPETTENTKKVNPAYISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWK 474
P++ L ++NPA+++W RQD+ I+ ++G N+S W
Sbjct: 65 TSXCPEKEL-----RPXEINPAFVAWRRQDRTILSWIYSSLTPGIMAQIIGHNSSHSAWN 119
Query: 475 WLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMY 654
LE F+S + A++MQ RL+ Q+ +KG+ M D++ KVK D LAA G + E +QIM
Sbjct: 120 ALEKIFSSCSRARIMQLRLEFQSTKKGSMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMN 179
Query: 655 ILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIAT 834
+L GLGS+YN+V+ + R +L HSMLL+FE RLE + S+ S N A+
Sbjct: 180 LLGGLGSDYNAVVTAINIREDKISLEAVHSMLLAFEQRLEQ-QGSIEQLPA--MSANYAS 236
Query: 835 HQQNXXXXXXXXXXXXXXPNQYFNGRGG---ITNHRGSYRGRGGRFNSHGRS-------- 981
N +Y GRG +TN RGRGGR+ GR
Sbjct: 237 SSNNRGGG-----------RKYNGGRGPNFMMTNSNFRGRGRGGRYGQSGRQNSSSSERP 285
Query: 982 RCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLC 1161
+CQ+C HT C++R D+ F + NN N+ P A V ++ N D
Sbjct: 286 QCQLCGKFGHTVQVCYHRFDITFQSTQNNTTGVSNSGNSNSMP----AMVASSNNLADDN 341
Query: 1162 WYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNG 1266
WY DSGA++H+T +++NL A Y G +KV IGNG
Sbjct: 342 WYLDSGASHHLTQNVANLTNATPYTGADKVTIGNG 376
>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
Length = 1432
Score = 204 bits (518), Expect = 1e-49
Identities = 120/369 (32%), Positives = 187/369 (50%), Gaps = 7/369 (1%)
Frame = +1
Query: 181 QPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTENTKKVNPA 360
Q + + +L +NY++W+ Q+ + + ++ G PE + +NPA
Sbjct: 30 QMLNHTLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGT-----SICPEKDLSPGVMNPA 84
Query: 361 YISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQ 540
+++W RQD+ I+ ++G NTS W LE+ F+S + A++MQ RL+LQ
Sbjct: 85 FVAWRRQDRTILSWIYSSLTPGIMAQIIGHNTSHSAWNALESIFSSSSRARIMQLRLELQ 144
Query: 541 TMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAH 720
+ +KG+ M D++ K+K D LAA G + E +Q+M +L GLGS+YN+V+ + R
Sbjct: 145 STKKGSMSMIDYIMKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDDK 204
Query: 721 FTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQN-----XXXXXXXXXXXXX 885
+L HSMLL+FE+RLE S Q S N A+ N
Sbjct: 205 ISLEAIHSMLLAFEHRLEQQSSI------EQMSANYASSSNNRGGGRKFNGGRGQGYSPN 258
Query: 886 XPNQYFNGRGGITNHRGSYRGRGGRFNS--HGRSRCQICHYSNHTADKCFYRCDLNFVPS 1059
N + GRG RG G+GGR NS + +CQ+C HTA C++R D++F
Sbjct: 259 NNNYTYRGRG-----RGGRNGQGGRQNSSPSEKPQCQLCGKFGHTAQICYHRFDISF-QG 312
Query: 1060 NNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQG 1239
++ + + N +N +A+ N N D WY DSGA++H+T +L NL + Y G
Sbjct: 313 GQTTISHSLNNGNQNNIPAMVASASN--NPADESWYLDSGASHHLTQNLGNLTSTSPYTG 370
Query: 1240 NEKVQIGNG 1266
+KV IGNG
Sbjct: 371 TDKVTIGNG 379
Score = 63.9 bits (154), Expect = 2e-07
Identities = 37/88 (42%), Positives = 49/88 (55%)
Frame = +2
Query: 1268 QDQTTGMVLLKGNLRNGLYCFNFLKANDPSCPTLKSTKFSHHTSQATSPVSAFSTDVKNK 1447
+D T MVL +G L NGLY F P + K + A++ S FS+ V+NK
Sbjct: 438 KDLHTKMVLAQGKLENGLYKF----------PVFSNLKPYSSINNASAFHSQFSSTVENK 487
Query: 1448 NSLVTWHNRLGHASFDVVKKALMNCNIS 1531
L WHNRLGHASFD+V K + CN++
Sbjct: 488 AEL--WHNRLGHASFDIVSKVMNTCNVA 513
>gb|ACN32036.1| unknown [Zea mays]
Length = 376
Score = 202 bits (513), Expect = 4e-49
Identities = 132/405 (32%), Positives = 195/405 (48%), Gaps = 16/405 (3%)
Frame = +1
Query: 133 MSTQTQNDGGSM---EQPIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVK 303
MST + DG + P SQ+++ +L NYL+W QV ++ L G++ G +
Sbjct: 1 MSTMSTVDGVAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLP 60
Query: 304 VPKEFLPETTEN-----TKKVNPAYISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEV 468
P++ + T +NP + SW QDQ E +L +VV + T+
Sbjct: 61 APRQTVAVDPAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGA 120
Query: 469 WKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQI 648
W LE +AS + A++MQ R+QL T++KG+ ++ KVK D LAA G ++E+ E I
Sbjct: 121 WSTLERMYASSSRARIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFI 180
Query: 649 MYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNI 828
Y+L GL ++Y+S++ ++T+R +T+SD ++ LLSFE R E +++G SVN
Sbjct: 181 SYLLRGLPADYDSLVTSITTRPDTYTISDVYAHLLSFETRQE-YHTAVGQIS----SVNN 235
Query: 829 ATHQQNXXXXXXXXXXXXXXPNQYFNGRGGITNHRGSYRGRGGR--------FNSHGRSR 984
A + NGRGG S GRG NS
Sbjct: 236 ANRVPSRGGGAFGQ-----------NGRGGRGRGGRSQPGRGNNRPPARPPSNNSSSSGT 284
Query: 985 CQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCW 1164
CQIC NH A +C++R D YQ +S TV A +E A D W
Sbjct: 285 CQICGKGNHNALQCWHRFD----------QAYQAES------TVKQAAAATHEYAVDPNW 328
Query: 1165 YPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNGTGSNHRNGAPQ 1299
Y DSGAT+H+T DL L Y G +K+Q+ NG GS+H + Q
Sbjct: 329 YMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSSHEASSSQ 373
>gb|ACL54615.1| unknown [Zea mays]
Length = 376
Score = 200 bits (509), Expect = 1e-48
Identities = 131/405 (32%), Positives = 194/405 (47%), Gaps = 16/405 (3%)
Frame = +1
Query: 133 MSTQTQNDGGSM---EQPIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVK 303
MST + DG + P SQ+++ +L NYL+W QV ++ L G++ G +
Sbjct: 1 MSTMSTVDGVAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLP 60
Query: 304 VPKEFLPETTEN-----TKKVNPAYISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEV 468
P++ + T +NP + SW QDQ E +L +VV + T+
Sbjct: 61 APRQTVAVDPAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGA 120
Query: 469 WKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQI 648
W LE +AS + ++MQ R+QL T++KG+ ++ KVK D LAA G ++E+ E I
Sbjct: 121 WSTLERMYASSSRVRIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFI 180
Query: 649 MYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNI 828
Y+L GL ++Y+S++ ++T+R +T+SD ++ LLSFE R E +++G SVN
Sbjct: 181 SYLLRGLPADYDSLVTSITTRPDTYTISDVYAHLLSFETRQE-YHTAVGQIS----SVNN 235
Query: 829 ATHQQNXXXXXXXXXXXXXXPNQYFNGRGGITNHRGSYRGRGGR--------FNSHGRSR 984
A + NGRGG S GRG NS
Sbjct: 236 ANRVPSRGGGAFGQ-----------NGRGGRGRGGRSQPGRGNNRPPARPPSNNSSSSGT 284
Query: 985 CQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCW 1164
CQIC NH A +C++R D YQ +S TV A +E A D W
Sbjct: 285 CQICGKGNHNALQCWHRFD----------QAYQAES------TVKQAAAATHEYAVDPNW 328
Query: 1165 YPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNGTGSNHRNGAPQ 1299
Y DSGAT+H+T DL L Y G +K+Q+ NG GS+H + Q
Sbjct: 329 YMDSGATDHITSDLERLTTRERYTGGDKIQVANGAGSSHEASSSQ 373
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 193 bits (491), Expect(2) = 1e-46
Identities = 129/376 (34%), Positives = 186/376 (49%), Gaps = 34/376 (9%)
Frame = +1
Query: 163 SMEQPIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTENT 342
S+ I P SQLIT RL + N+L+WK Q+ AV+GY L+G+L G +VP + + +
Sbjct: 234 SLRMVISPLSQLITMRLEDDNFLMWKYQIENAVRGYGLEGFLFGTEQVPPKMVTDKI-GV 292
Query: 343 KKVNPAYISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQ 522
NP + + RQD L VVG +++ EVW + NF SQ++AKVM
Sbjct: 293 LVPNPKFRDYQRQDHLLISWLLSSIGSAFLPQVVGCSSAFEVWNTISQNFNSQSSAKVMF 352
Query: 523 YRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTL 702
Y+ Q+Q ++K MRD+L K+K+ CDLLA AGHKI + + I+ I+ GLG EY V+ +
Sbjct: 353 YKSQMQMLKKDGLTMRDYLTKMKNYCDLLATAGHKISDTDHILAIMQGLGDEYEXVIAVI 412
Query: 703 TSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXX 882
S+ + +L S L++ E R+ + SS S N + N
Sbjct: 413 XSKKSSPSLQYVTSTLIAHEGRIAHKISS------NDLSXNYTSQYSN--RGXSSSWNSN 464
Query: 883 XXPNQYFNGR---GGITNHRGSY---RGRG-GRFNSHGRSRCQICHYSNHTADKCFYRCD 1041
P+ F R GG RGS+ RGRG GR + +CQ C+ H +CFYR D
Sbjct: 465 GYPSSGFQNRNQFGGNXXTRGSFVXNRGRGRGRAQGGIKPQCQXCNKFGHXVHRCFYRYD 524
Query: 1042 LNF---VPSN-------------------NNAGN-----YQVQSNNVHNPTVNIANVGNN 1140
NF +P N ++AGN Y Q + ++ A V
Sbjct: 525 PNFHGNMPXNGXTPGXLGSXARNGASGSISSAGNVNXTEYDAQEBQDYSEME--AMVATX 582
Query: 1141 ENAEDLCWYPDSGATN 1188
E+ ++ CW+PDSGATN
Sbjct: 583 EDLQNCCWFPDSGATN 598
Score = 21.9 bits (45), Expect(2) = 1e-46
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 1301 GNLRNGLYCFNFLK 1342
GNL GLY FN K
Sbjct: 600 GNLHKGLYQFNLSK 613
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 193 bits (491), Expect = 1e-46
Identities = 123/395 (31%), Positives = 192/395 (48%), Gaps = 18/395 (4%)
Frame = +1
Query: 136 STQTQNDGGSMEQPIQ---PQSQLIT----CRLTESNYLVWKMQVWAAVKGYSLDGYLTG 294
++Q+ + GS + P Q++ +L +NY++W+ Q+ + + ++ G
Sbjct: 5 ASQSSSSSGSAQSSSMASIPSYQMLNYSLPVKLDRTNYILWRSQIDNVIFANGFEDFIDG 64
Query: 295 EVKVPKEFLPETTENTKKVNPAYISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWK 474
P++ L ++NPA+++ RQD+ I+ ++G N+S W
Sbjct: 65 TSVCPEKEL-----RPGEINPAFVAXRRQDRTILSWIYSSLTPGIMAQIIGHNSSHSAWN 119
Query: 475 WLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMY 654
LE F+S + A++MQ L+ Q+ +KG+ M D++ KVK D LAA G + E +QIM
Sbjct: 120 ALEKIFSSCSRARIMQLXLEFQSTKKGSMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMN 179
Query: 655 ILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIAT 834
+L GLGS+YN+V+ + R +L HSMLL+FE RLE + S+ S N A+
Sbjct: 180 LLGGLGSDYNAVVTAINIREDKISLEAVHSMLLAFEQRLEQ-QGSIEQLPA--MSANYAS 236
Query: 835 HQQNXXXXXXXXXXXXXXPNQYFNGRGG---ITNHRGSYRGRGGRFNSHGRS-------- 981
N +Y GRG +TN RGRG R+ GR
Sbjct: 237 XSNNRGGG-----------RKYNGGRGPNFMMTNSNFRGRGRGXRYGQSGRQNSSSSERP 285
Query: 982 RCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLC 1161
+CQ+C HT C++R D+ F + NN N+ P A V + N D
Sbjct: 286 QCQLCGKFGHTVQVCYHRFDITFQSTQNNTTGVSNSGNSNXMP----AMVAXSNNXADDN 341
Query: 1162 WYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNG 1266
WY DSGA++H+T +++NL A Y G +KV IGNG
Sbjct: 342 WYLDSGASHHLTQNVANLTNATPYTGADKVTIGNG 376
>emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]
Length = 1282
Score = 190 bits (483), Expect = 1e-45
Identities = 114/374 (30%), Positives = 186/374 (49%), Gaps = 13/374 (3%)
Frame = +1
Query: 181 QPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTENTKKVNPA 360
Q + + +L +NY++WK Q+ V + ++ G P+ + +NPA
Sbjct: 27 QMLNHTLPVKLDRTNYILWKSQIDNVVFANGFEDFIDGS-----SICPDKELXSGLINPA 81
Query: 361 YISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQ 540
+++W RQD+ + ++G N+ W LE F+S + A++MQ RL+LQ
Sbjct: 82 FVAWRRQDRTILSWLYSSLTPAXMAQIIGHNSXHSAWNALEKTFSSSSRARIMQLRLELQ 141
Query: 541 TMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAH 720
+ +KG+ M D++ KVK D LAA G + E +Q+M +L GLGS+YN+V+ + R
Sbjct: 142 STKKGSXSMIDYIMKVKGAADSLAAIGEPVSEQDQVMNLLDGLGSDYNAVVTAINIRDDK 201
Query: 721 FTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXXXXPNQY 900
++ HSMLL FE+RLE +SS+ F + S N A+ + +Y
Sbjct: 202 ISIEAVHSMLLVFEHRLEQ-QSSIEQF--SPISANYASSSNSRGGG-----------RRY 247
Query: 901 FNGRG-----GITNHRGSYRGRGGRF--------NSHGRSRCQICHYSNHTADKCFYRCD 1041
GRG +N+ GRGGR+ NS + +CQ+C +T C++R D
Sbjct: 248 NGGRGQNHTPNTSNYTYRGSGRGGRYGQNERHNSNSSEKPQCQLCGKFGYTVQICYHRFD 307
Query: 1042 LNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNL 1221
+++ S ++ +N NP A V ++ D WY DSGA++H+T + NL
Sbjct: 308 ISYQSSQSS----NTSPSNASNPNSIPAMVASSNYLADDTWYLDSGASHHLTQSVGNLTS 363
Query: 1222 AADYQGNEKVQIGN 1263
++ Y G +KV IGN
Sbjct: 364 SSPYTGTDKVTIGN 377
>emb|CAN71138.1| hypothetical protein VITISV_008660 [Vitis vinifera]
Length = 1138
Score = 171 bits (433), Expect(2) = 4e-45
Identities = 107/371 (28%), Positives = 183/371 (49%), Gaps = 9/371 (2%)
Frame = +1
Query: 190 SQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTENTKKVNPAYIS 369
+ L++ +L N+L+WK Q+ +A++GY L ++ + KV +FL + K ++
Sbjct: 26 NHLLSVKLDNKNFLIWKQQIVSAIRGYGLQKFVLSDDKVLVQFLTREDARSGKATKEFLE 85
Query: 370 WIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMR 549
W + DQ E+IL +VG +TS +W LE F SQ AK Q++ QLQ +
Sbjct: 86 WEQHDQLLLSWLLSFVFESILPRLVGCDTSFLLWGRLEQYFVSQTRAKAKQFKTQLQHTK 145
Query: 550 KGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTL 729
KG + ++L K+K C D LA+ G + + IL+GL ++Y S + ++T R F++
Sbjct: 146 KGGSTIDEYLVKIKVCVDSLASVGVSLSTKDHFESILNGLPNDYESFVTSITLRNDDFSV 205
Query: 730 SDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXXXXPNQYFN- 906
+ ++L++ +R+E SSL + + + + + N + Y
Sbjct: 206 EEIEALLMAHASRVEKNNSSLDSSSSAHVANSNSVEKGNRFKQDYYAANSQGSHSAYNGG 265
Query: 907 -GRGGITNHRGSYRG-RGGRFNSHGRS-RCQICHYSNHTADKC-----FYRCDLNFVPSN 1062
G+GG RG + G RG +N +GRS R C N + + + VP N
Sbjct: 266 FGQGGDFGRRGGFNGSRGFNWNDNGRSNRGGFCGRGNRGSFQARPPWNSDNQNEKLVPQN 325
Query: 1063 NNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGN 1242
+ N +++ +P VN + +E D WYPD GA+NHVT++ +NL + ++
Sbjct: 326 LSGRNPSLRAYYSFSPQVN-GVIPTSEVFNDDNWYPDPGASNHVTHNPANLMKSVEFARQ 384
Query: 1243 EKVQIGNGTGS 1275
+V +GNGT S
Sbjct: 385 NQVHVGNGTVS 395
Score = 39.3 bits (90), Expect(2) = 4e-45
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +2
Query: 1274 QTTGMVLLKGNLRNGLYCFNFLKANDPSCPTLKSTK-FSHHTSQATSPVSAFSTDVKNKN 1450
Q T VL+ G +R+GLY F D S L+ T+ S S S S+ +
Sbjct: 417 QVTQAVLMVGKVRDGLYAF------DSSHLALRPTQSLSKSPSVVASSFSSKVCTASLSS 470
Query: 1451 SLVTWHNRLGHASFDVVKKAL 1513
+ WH RLGH S ++K L
Sbjct: 471 TFDLWHRRLGHPSAAIIKNVL 491
>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
Length = 646
Score = 184 bits (468), Expect = 7e-44
Identities = 118/397 (29%), Positives = 198/397 (49%), Gaps = 17/397 (4%)
Frame = +1
Query: 133 MSTQTQNDGGSMEQPIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPK 312
M+TQT + + Q +T +L +N+L+W+ Q+ V + L G P
Sbjct: 27 MATQTTG----INSNLPTFGQTLTIKLDRNNFLIWRNQLLNIVVANGYEDILEGTRSCPY 82
Query: 313 EFLP-----ETTENTKKVNPAYISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKW 477
+++ TT + +NP Y+ W RQ++ E ++ ++ N++ E+W
Sbjct: 83 QWIAVTDTASTTHGSVILNPEYVLWQRQNRLVMSWIYSSLTEQMMTQIMAYNSACEIWTA 142
Query: 478 LENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYI 657
L ++AS + A++M+ RLQLQT RKG + D++ +++ CD L A G + +Q+M +
Sbjct: 143 LRESYASASRARIMELRLQLQTTRKGGLSVMDYMLRIQHICDHLRAIGESVSIDDQVMAV 202
Query: 658 LSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATH 837
L+GLGSEYN ++ ++TSRL ++ S L ++E RLE S + N A +
Sbjct: 203 LAGLGSEYNPIVASITSRLDSISVQALQSYLETYEKRLEIQNSVEQHI---PLQANAAMY 259
Query: 838 QQNXXXXXXXXXXXXXXPNQYFNGRGGIT-----NHRGSYRG--RG-----GRFNSHGRS 981
N + + + +T NHR S +G RG GR N R
Sbjct: 260 NSN-------RGKRKPYQQNFHHSQTPVTATHNFNHRNSSQGGFRGGHSNKGRANPGSRP 312
Query: 982 RCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLC 1161
+CQIC H A +C++R D F P +++ + S++ +P +A G +
Sbjct: 313 QCQICCKIGHVATECWHRFDNQFQPKASHSNQF---SSSAQDPQALMAAPG---LLGETP 366
Query: 1162 WYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNGTG 1272
W+ D+GAT+HVT DL+NL+L + G++KV +GNG G
Sbjct: 367 WFLDTGATHHVTSDLANLSLHNPFSGDDKVIVGNGKG 403
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 184 bits (466), Expect = 1e-43
Identities = 119/368 (32%), Positives = 180/368 (48%), Gaps = 8/368 (2%)
Frame = +1
Query: 193 QLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLP----ETTENTKKV-NP 357
Q I+ +LT++N+ +WK + + G ++GYLTG +VP + E E TKKV NP
Sbjct: 15 QAISEKLTKNNFSLWKTHILPVICGARMEGYLTGATQVPSAEIEVKEGEKGEITKKVSNP 74
Query: 358 AYISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQL 537
AY +WI DQ + IL+ V +T+ WK + ++Q+ A+ + R+ L
Sbjct: 75 AYEAWIAADQQVLGFLLSSISKEILIQVANVDTAAHAWKMIVGLLSTQSRARALNTRIAL 134
Query: 538 QTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLA 717
T +KG + D+++K+K+ D +A+AG +++ E YIL+GL S+Y V+ ++ R
Sbjct: 135 ATTQKGESSVSDYISKMKTLADEMASAGKPLDDEEFTSYILAGLDSDYEQVVSSIVGRSE 194
Query: 718 HFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXXXXPNQ 897
T+S+ +S LLSFE + SS G+ SVN A H +N N+
Sbjct: 195 GVTISEVYSQLLSFEELWQTNGSS-----GSYSSVNSANHGRNNGGGGNFNNGGGYFSNR 249
Query: 898 YFNGRGGITNHRGSY-RGRGGRFNSHGRSRCQICHYSNHTADKCFYRCDLNFVPSNN--N 1068
GRGG RG RG GGR N R CQ+C H C++ D +FVP
Sbjct: 250 ---GRGGGRGDRGGCGRGNGGR-NFKPRPTCQLCSKVGHVVADCWHCYDDSFVPDARVAA 305
Query: 1069 AGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEK 1248
A +Y V SN WY D+GAT+H+T +L L Y G E+
Sbjct: 306 AASYGVDSN----------------------WYVDTGATDHITNELEKLTTRDRYNGKEQ 343
Query: 1249 VQIGNGTG 1272
+ +G+G
Sbjct: 344 IHTASGSG 351
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 181 bits (460), Expect = 6e-43
Identities = 111/373 (29%), Positives = 186/373 (49%), Gaps = 15/373 (4%)
Frame = +1
Query: 199 ITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTENTKKVNPAYISWIR 378
++ +L N+LV + Q+ ++G+ L +L+ +P EFL E VNP + W +
Sbjct: 19 VSSKLDNHNFLVXRKQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHVNPKFQDWEQ 78
Query: 379 QDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGN 558
Q Q + +L +V +TS +VWK LE FA+Q AKV Q++ QL +KG+
Sbjct: 79 QXQLIMSXLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGD 138
Query: 559 QCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDA 738
+ D+L K+++ DLLA GHKI + I I GL +Y + ++++ SRL +T+ +
Sbjct: 139 LSISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYETFIISVNSRLDPYTVEEI 198
Query: 739 HSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXXXXPNQYFNGRGG 918
++LL+ E+R+E + +F + I T++ + G
Sbjct: 199 EALLLAQESRIEK-NIKIADFSTPSLAHLITTNRNGSPHFNYRASTRNSNFRPPTHSGNG 257
Query: 919 ITNHRGSY----RGRGGR--FNSHGRSRCQICHYSNHTADKCFYRCDLNFVPSNNNAGNY 1080
+ + RG++ RGR GR + + + +CQ+C H +C+YR D +F + GN
Sbjct: 258 MQHFRGNFTQQGRGRHGRGSWKGNNKPQCQLCGRIGHVVMQCYYRFDQSFTGPSQLQGN- 316
Query: 1081 QVQSNNVH---------NPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADY 1233
+ Q N H P E +D WYPDSGAT+H+T +L+NL + +
Sbjct: 317 RPQGNMAHLHQQLSEXFFPGTPSVKPTTAEIIQDNNWYPDSGATHHLTPNLNNLLTKSQF 376
Query: 1234 QGNEKVQIGNGTG 1272
+++V +GNG G
Sbjct: 377 PSSDEVFVGNGKG 389
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 181 bits (458), Expect = 1e-42
Identities = 121/399 (30%), Positives = 188/399 (47%), Gaps = 21/399 (5%)
Frame = +1
Query: 187 QSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTE--NTKKVNPA 360
Q ++ +L ++NY +WK+Q+ AAV+G L G+LTG + P+ + T + +TKK NPA
Sbjct: 16 QGHTVSEKLGKNNYALWKVQICAAVRGARLQGHLTGASEKPEAEVTVTADGKSTKKANPA 75
Query: 361 YISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQ 540
+ W DQ ++L+ V T+ EVW +E ++ A+ M R L
Sbjct: 76 FEDWEALDQQVLGYLLSSLSRDVLMQVAACETAAEVWATIERMYSMHTRARTMNTRFALT 135
Query: 541 TMRKGNQCMRDFLNKVKSCCDLLAAA-GHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLA 717
+KGN + +F K+K+ D +AA+ G ++E E I +I++GLG Y+ V+ + +R
Sbjct: 136 NTKKGNMTLPEFFGKMKALGDEMAASTGRPVDEEEMIQHIIAGLGEGYSKVISVVCARPE 195
Query: 718 HFTLSDAHSMLLSFENRLENTESSLGNFDGTQFS-VNIATHQQNXXXXXXXXXXXXXXPN 894
T+SD +S +++FE R + + GTQ VN+A
Sbjct: 196 PMTVSDLYSQVVNFEGR-------MALYRGTQEGVVNLANRSSGGNNG------------ 236
Query: 895 QYFNGRGGITNH--RGSYRGRGGRFNSHGRSR------------CQICHYSNHTADKCFY 1032
GRGG TN G+ RGR GR N GR R CQ+C HTA C+Y
Sbjct: 237 ---GGRGGYTNRGSGGAPRGR-GRGNGGGRGRGRAPGGPDRKPTCQVCFKRGHTATDCWY 292
Query: 1033 RCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSN 1212
R D ++VP + + A ++ D WY D+GAT+H+T +L
Sbjct: 293 RYDEDYVPDDKHVA----------------AATASSSYGVDTNWYIDTGATDHITGELEK 336
Query: 1213 LNLAADYQGNEKVQIGNGTGSNHR---NGAPQGES*KWP 1320
L Y GNE++ +G S+ N Q +S + P
Sbjct: 337 LTTKDKYNGNEQIHTASGADSSDESVCNACQQAKSHQLP 375
>ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488260 [Cicer arietinum]
Length = 752
Score = 163 bits (412), Expect(2) = 1e-42
Identities = 104/353 (29%), Positives = 169/353 (47%), Gaps = 5/353 (1%)
Frame = +1
Query: 199 ITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTENTKKVNPAYISWIR 378
++ +L NYL+WK V ++G LDGY+ G + P++F+ T + TKK NP Y WI
Sbjct: 69 VSVKLDRDNYLLWKSLVLPLIRGCKLDGYIIGTKECPEQFI-STNDTTKKNNPDYEEWIA 127
Query: 379 QDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGN 558
DQ +I ++ TS E+W ++ + ++ + + + RKG
Sbjct: 128 HDQALLGWLRNSVAIDIATQLLHCETSKELWNEAQSLTGAHTKSRTIYLKSEFHNTRKGQ 187
Query: 559 QCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDA 738
M +L K+K+ D L AG I + I+ L+GL ++YN V+V L+ ++ + D
Sbjct: 188 MKMDQYLLKMKNLSDKLKLAGSPISSSDLIIQTLNGLDADYNPVVVKLSDQI-NLNWVDL 246
Query: 739 HSMLLSFENRLENTESSLGNFDGTQF--SVNIATHQQNXXXXXXXXXXXXXXPNQYFNGR 912
+ LL+FENR+E L NF S N+A+ + R
Sbjct: 247 QAQLLAFENRME----QLNNFSNLSMNASANLASQT---------------------HFR 281
Query: 913 GGITNHRGSYRG---RGGRFNSHGRSRCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQ 1083
+ RG++RG RGGR + CQ+C+ HT +CFYR D ++ SN+ A N +
Sbjct: 282 SNKSGTRGNWRGSNFRGGRGRGRSKPTCQVCNKIGHTTVQCFYRFDKSYTCSNHYAENNK 341
Query: 1084 VQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGN 1242
++++ A + + + +D WY DSGA NHVT+ L ++ GN
Sbjct: 342 QENHS--------AFIASPYHGQDYEWYFDSGANNHVTHQNEKLQDLSESNGN 386
Score = 38.9 bits (89), Expect(2) = 1e-42
Identities = 24/90 (26%), Positives = 38/90 (42%)
Frame = +2
Query: 1274 QTTGMVLLKGNLRNGLYCFNFLKANDPSCPTLKSTKFSHHTSQATSPVSAFSTDVKNKNS 1453
++ G LLKG +++GLY + S SQ + + +N
Sbjct: 382 ESNGNALLKGKVKDGLY------------------QLSSANSQVNKDSCIYMSVKEN--- 420
Query: 1454 LVTWHNRLGHASFDVVKKALMNCNISFEEN 1543
WH +LGH + V++K L NCN+ N
Sbjct: 421 ---WHRKLGHPNNKVLEKVLKNCNVKTSSN 447
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 180 bits (457), Expect = 1e-42
Identities = 123/396 (31%), Positives = 189/396 (47%), Gaps = 16/396 (4%)
Frame = +1
Query: 133 MSTQTQNDGGSMEQPI--QPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKV 306
M++ ++N+ G+ P+ QP S+ +L +SN+ VWK Q+ A ++G L+G+LTG+ +
Sbjct: 1 MASSSKNNTGN---PLVGQPVSE----KLGKSNHAVWKAQILATIRGARLEGHLTGDDQP 53
Query: 307 PKEFLPETTENTKKV---NPAYISWIRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKW 477
P L E K+V NP Y W+ DQ +++LV V T+ W
Sbjct: 54 PAPIL-RRKEGEKEVVVSNPEYEEWVATDQQVLAYLLSSMTKDLLVQVATCRTAASAWSM 112
Query: 478 LENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYI 657
++ F S A+ + RL L T++KG+ + ++ K+++ D L A G +++ E I YI
Sbjct: 113 IQGMFGSMTRARTINTRLSLSTLQKGDMNITTYVGKMRALADDLMAVGKPVDDDELIGYI 172
Query: 658 LSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATH 837
+GL E+ V+ T+ R T+ + ++ L+SFE RL + S G Q SVN A+
Sbjct: 173 FAGLDDEFEPVISTIVGRPDPVTIGETYAQLISFEQRLAHRRS------GDQSSVNSASR 226
Query: 838 QQNXXXXXXXXXXXXXXPNQYFNGRGGITNHRGSYRGR----GGRFNSHG----RSRCQI 993
+ GRG +N RGR GGR N G R +CQ+
Sbjct: 227 SRGQPQRGGSRSGGDSN-----RGRGAPSNGANRGRGRGNPSGGRANVGGGTDNRPKCQL 281
Query: 994 CHYSNHTADKCFYRCDLNFVPSNNNAG---NYQVQSNNVHNPTVNIANVGNNENAEDLCW 1164
C+ HT C+YR D NFVP AG +Y V +N W
Sbjct: 282 CYKRGHTVCDCWYRYDENFVPDERFAGTAVSYGVDTN----------------------W 319
Query: 1165 YPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNGTG 1272
Y D+GAT+HVT +L L + Y GN++V +G G
Sbjct: 320 YLDTGATDHVTGELDKLTVRDKYHGNDQVHTASGAG 355
>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1180
Score = 180 bits (456), Expect = 2e-42
Identities = 109/367 (29%), Positives = 183/367 (49%), Gaps = 11/367 (2%)
Frame = +1
Query: 199 ITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKE--FLPETTENTKKVNPAYISW 372
+T +L + NYL+WK+QV A ++G LDGYLTG ++ P + ++ ++ + NPA+ W
Sbjct: 18 VTEKLGKGNYLIWKVQVLAVIRGARLDGYLTGAIRAPSPTTIIKKSDKDVEVPNPAFDEW 77
Query: 373 IRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRK 552
I DQ ++L V ++ +W +E F+S A+ + ++ L +K
Sbjct: 78 IANDQQVLGYLLTTMSRDVLSKVATCGSAAALWSVVEGMFSSATRARSINTKITLTNTKK 137
Query: 553 GNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLS 732
G+ + +++ K+++ D LA + ++E + I +I+ GL ++ ++ +L S+ H +L
Sbjct: 138 GDLSVAEYVGKIRALADELATSDKLVDEEDLISFIIVGLDEDFEPIISSLVSKSEHVSLG 197
Query: 733 DAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXXXXPNQYFN-- 906
+A+S LLSFE R++ + + S N+A H+ NQ
Sbjct: 198 EAYSQLLSFEQRMKLRQ---------EHSANLA-HRGRGRGQQQQGRGCGNQGNQQQQQC 247
Query: 907 GRGGITNHRG----SYRGRGGRFNSHGRSRCQICHYSNHTADKCFYRCDLNFVPSNNNAG 1074
GRGG RG SY+ +GG N+ R +CQ+C+ HT C+YR D +FVP AG
Sbjct: 248 GRGGKNCGRGRGNTSYQRQGGN-NTDNRPKCQLCYKRGHTVIDCWYRYDEDFVPDEKYAG 306
Query: 1075 ---NYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNE 1245
+Y V SN WY D+GAT+H+T +L L + Y+G +
Sbjct: 307 TAASYGVDSN----------------------WYVDTGATDHITGELEKLTIRDKYKGQD 344
Query: 1246 KVQIGNG 1266
+VQ NG
Sbjct: 345 QVQAANG 351
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 178 bits (451), Expect = 6e-42
Identities = 110/368 (29%), Positives = 177/368 (48%), Gaps = 12/368 (3%)
Frame = +1
Query: 199 ITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKE--FLPETTENTKKVNPAYISW 372
+T +L++ NYL+WK+QV A ++G LD YLTG K P + + + + NPA W
Sbjct: 18 VTEKLSKGNYLIWKVQVLAVIRGARLDSYLTGATKKPSATIIIKKNEKEVEVSNPAVDEW 77
Query: 373 IRQDQXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRK 552
I DQ ++L V +++ +W +E F+S A+ + ++ L +K
Sbjct: 78 IANDQQVLGYLLTTMSRDVLSQVATCSSAASLWSTIEGMFSSATRARSINTKIALTNTKK 137
Query: 553 GNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLS 732
G+ + ++++K++ D LA +G ++E + I YI++GL ++ ++ +L S+ H +L
Sbjct: 138 GDLGIAEYVSKMRVLADELATSGKPVDEEDLISYIIAGLDEDFEPIISSLVSKSEHVSLG 197
Query: 733 DAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXXXXPNQYFNGR 912
+A+S LLSFE R++ + + S N+A + P Q G
Sbjct: 198 EAYSQLLSFEQRMKMRQ---------EHSANLA--NRGRGRGNPGRGRNNKQPQQQQRGH 246
Query: 913 GGITNHRGSYRGRGGRFNSHG-------RSRCQICHYSNHTADKCFYRCDLNFVPSNNNA 1071
GG N RG RGRG N R +CQ+C+ HT C+YR D +FVP A
Sbjct: 247 GG--NSRG--RGRGNNSNQRQGGNGVDYRPKCQLCYKRGHTVIDCWYRYDEDFVPDEKYA 302
Query: 1072 G---NYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGN 1242
G +Y V SN WY D+G T+HVT +L L + Y+G
Sbjct: 303 GTTASYGVDSN----------------------WYVDTGTTDHVTGELEKLTIRDKYKGQ 340
Query: 1243 EKVQIGNG 1266
++VQ NG
Sbjct: 341 DQVQTANG 348
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 166 bits (419), Expect(2) = 1e-41
Identities = 114/378 (30%), Positives = 174/378 (46%), Gaps = 31/378 (8%)
Frame = +1
Query: 238 KMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTENT--KKVNPAYISWIRQDQXXXXXXXX 411
K QV AA++G L+GYLTG K+P E ET +N K NPA+ W +DQ
Sbjct: 5 KAQVRAAMRGARLEGYLTGATKMPDE---ETVDNKGKKSPNPAFEEWEAKDQQILSYLLS 61
Query: 412 XXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVK 591
+ + V + T+ E W +E FASQ A+ + RL L T +KG+ + ++ K+K
Sbjct: 62 SISREVQIQVTSAKTAAEAWHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMK 121
Query: 592 SCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRL 771
D +AAAG +++ E + YIL+GL E+ ++ L +R+ +L D +S LL+FE +L
Sbjct: 122 GYGDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRVDPISLEDLYSQLLNFETKL 181
Query: 772 ENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXXXXPNQYFNGRGGITNHRGSYRG- 948
+ G + Q S N+A GRGG N RG G
Sbjct: 182 DLMR---GGGEQHQGSANMA-------------------------GRGGRGNQRGGSGGR 213
Query: 949 --RGGRFNSHG--------------------------RSRCQICHYSNHTADKCFYRCDL 1044
RGGR +S G R CQ+C HTA +C++R +
Sbjct: 214 GQRGGRGSSRGGRASWSGGRQSNQGGYIRRSNNSSDERPVCQVCFKKGHTAARCWHRFEE 273
Query: 1045 NFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLA 1224
+FVP AG +N+ H D WY D+GAT+H+T +L L++
Sbjct: 274 DFVPDEKLAG---AATNSYH---------------VDTNWYTDTGATDHITGELEKLSIR 315
Query: 1225 ADYQGNEKVQIGNGTGSN 1278
Y G +++ +G+ ++
Sbjct: 316 EKYAGGDQIHTASGSDNS 333
Score = 33.1 bits (74), Expect(2) = 1e-41
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = +2
Query: 1268 QDQTTGMVLLKGNLRNGLYCFNFLKANDPSCPTLKSTKFSHHTSQATSPVSAFSTDVKN- 1444
+D+ T +LLKG GLY P+ A ST +KN
Sbjct: 346 KDKDTKNILLKGRCHKGLY-----------------------------PIPATST-IKNA 375
Query: 1445 ----KNSLVTWHNRLGHASFDVVKK 1507
K S+ WHNRLGH S +V++
Sbjct: 376 LGAVKPSMSRWHNRLGHPSSFIVRQ 400
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 969
Score = 166 bits (419), Expect(2) = 1e-41
Identities = 114/378 (30%), Positives = 174/378 (46%), Gaps = 31/378 (8%)
Frame = +1
Query: 238 KMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTENT--KKVNPAYISWIRQDQXXXXXXXX 411
K QV AA++G L+GYLTG K+P E ET +N K NPA+ W +DQ
Sbjct: 5 KAQVRAAMRGARLEGYLTGATKMPDE---ETVDNKGKKSPNPAFEEWEAKDQQILSYLLS 61
Query: 412 XXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVK 591
+ + V + T+ E W +E FASQ A+ + RL L T +KG+ + ++ K+K
Sbjct: 62 SISREVQIQVTSAKTAAEAWHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMK 121
Query: 592 SCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRL 771
D +AAAG +++ E + YIL+GL E+ ++ L +R+ +L D +S LL+FE +L
Sbjct: 122 GYGDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRVDPISLEDLYSQLLNFETKL 181
Query: 772 ENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXXXXPNQYFNGRGGITNHRGSYRG- 948
+ G + Q S N+A GRGG N RG G
Sbjct: 182 DLMR---GGGEQHQGSANMA-------------------------GRGGRGNQRGGSGGR 213
Query: 949 --RGGRFNSHG--------------------------RSRCQICHYSNHTADKCFYRCDL 1044
RGGR +S G R CQ+C HTA +C++R +
Sbjct: 214 GQRGGRGSSRGGRASWSGGRQSNQGGYIRRSNNSSDERPVCQVCFKKGHTAARCWHRFEE 273
Query: 1045 NFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLA 1224
+FVP AG +N+ H D WY D+GAT+H+T +L L++
Sbjct: 274 DFVPDEKLAG---AATNSYH---------------VDTNWYTDTGATDHITGELEKLSIR 315
Query: 1225 ADYQGNEKVQIGNGTGSN 1278
Y G +++ +G+ ++
Sbjct: 316 EKYAGGDQIHTASGSDNS 333
Score = 33.1 bits (74), Expect(2) = 1e-41
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Frame = +2
Query: 1268 QDQTTGMVLLKGNLRNGLYCFNFLKANDPSCPTLKSTKFSHHTSQATSPVSAFSTDVKN- 1444
+D+ T +LLKG GLY P+ A ST +KN
Sbjct: 346 KDKDTKNILLKGRCHKGLY-----------------------------PIPATST-IKNA 375
Query: 1445 ----KNSLVTWHNRLGHASFDVVKK 1507
K S+ WHNRLGH S +V++
Sbjct: 376 LGAVKPSMSRWHNRLGHPSSFIVRQ 400
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 176 bits (446), Expect = 2e-41
Identities = 114/372 (30%), Positives = 179/372 (48%), Gaps = 12/372 (3%)
Frame = +1
Query: 208 RLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLPETTENTKKV-NPAYISWIRQD 384
+LT+ NYL+WK QV A++ LD LTG P + + + ++ T V NPAY WI +D
Sbjct: 23 KLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWIARD 82
Query: 385 QXXXXXXXXXXXENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQC 564
Q +L SVV +TS VW L ++S + A+ + R+ L T +KG
Sbjct: 83 QAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASS 142
Query: 565 MRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHS 744
+ ++ K++ D L AAG +++ E + ++L+GL ++N ++ + +R T D ++
Sbjct: 143 VAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYT 202
Query: 745 MLLSFENR--LENTESSLGNFDGTQFSVNIATHQQNXXXXXXXXXXXXXXPNQYFNGRG- 915
LLS+ENR L+ SSL Q S N + + + GRG
Sbjct: 203 QLLSYENRMHLQTGSSSL-----MQSSANARSPGRGMSWGRSGG-------RGFSRGRGR 250
Query: 916 GITNHRGSYR--GRGGRF------NSHGRSRCQICHYSNHTADKCFYRCDLNFVPSNNNA 1071
G RG ++ GRG + ++ R RCQ+C HTA C+YR D N+VP +
Sbjct: 251 GRGPSRGGFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRS- 309
Query: 1072 GNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKV 1251
AN ++N ++ WY D+GAT+H+T DL L + Y G +++
Sbjct: 310 -----------------ANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQI 352
Query: 1252 QIGNGTGSNHRN 1287
NGTG N
Sbjct: 353 IAANGTGMTISN 364