BLASTX nr result
ID: Rehmannia22_contig00019135
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00019135
(664 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 442 e-122
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 436 e-120
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 435 e-120
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 435 e-120
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 435 e-120
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 435 e-120
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 435 e-120
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 435 e-120
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 429 e-118
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 394 e-107
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 365 5e-99
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 293 3e-77
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 271 1e-70
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 271 1e-70
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 269 5e-70
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 265 9e-69
gb|ACS28228.1| replicase [Alternanthera mosaic virus] 262 8e-68
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai... 261 1e-67
gb|ACS28233.1| replicase [Alternanthera mosaic virus] 260 2e-67
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082... 260 3e-67
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 442 bits (1138), Expect = e-122
Identities = 211/221 (95%), Positives = 217/221 (98%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLR+FHRGPTHGDFFLNAHVEPKDVPRYPQDTV++RLENI TSIAFMGDTLHF
Sbjct: 94 FLFMKPAKLRYFHRGPTHGDFFLNAHVEPKDVPRYPQDTVLNRLENISTSIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFHKYDQLEWLT+GHL A NQPT+TAQRLETKGANHLFIFQRGNYLTPERRTFTTT+ Y
Sbjct: 214 SYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTDPY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 274 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 314
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 436 bits (1122), Expect = e-120
Identities = 209/221 (94%), Positives = 212/221 (95%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHF
Sbjct: 94 FLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFHKY QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY
Sbjct: 214 SYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVPD+FLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 274 VTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 314
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 435 bits (1118), Expect = e-120
Identities = 209/221 (94%), Positives = 211/221 (95%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHF
Sbjct: 94 FLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY
Sbjct: 214 SYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 314
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 435 bits (1118), Expect = e-120
Identities = 209/221 (94%), Positives = 211/221 (95%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHF
Sbjct: 94 FLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY
Sbjct: 214 SYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 314
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 435 bits (1118), Expect = e-120
Identities = 209/221 (94%), Positives = 211/221 (95%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHF
Sbjct: 94 FLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY
Sbjct: 214 SYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 314
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 435 bits (1118), Expect = e-120
Identities = 209/221 (94%), Positives = 211/221 (95%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHF
Sbjct: 94 FLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY
Sbjct: 214 SYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 314
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 435 bits (1118), Expect = e-120
Identities = 209/221 (94%), Positives = 211/221 (95%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHF
Sbjct: 94 FLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY
Sbjct: 214 SYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 314
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 435 bits (1118), Expect = e-120
Identities = 209/221 (94%), Positives = 211/221 (95%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQDT+I RLENIPTSIAFMGDTLHF
Sbjct: 94 FLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFH Y QLEWLTVGHLT Q T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY
Sbjct: 214 SYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 314
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 429 bits (1104), Expect = e-118
Identities = 206/221 (93%), Positives = 212/221 (95%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQ+T+I RLENIPT+IAF+GDTLHF
Sbjct: 94 FLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQETIIKRLENIPTNIAFIGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFHKY QLEWLTVGHLTA T+TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY
Sbjct: 214 SYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDI
Sbjct: 274 VTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 314
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 394 bits (1011), Expect = e-107
Identities = 189/217 (87%), Positives = 199/217 (91%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLRFFHRGPTHGD FLNAHVEPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHF
Sbjct: 94 FLFMKPAKLRFFHRGPTHGDHFLNAHVEPKDVPRYPQETIINRLADIPTQIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
LSPSF+TALFAHSP+LQTLYATLVLPPE RSLYPQIYTLTYSEDGFMYIPGGHAGA
Sbjct: 154 LSPSFLTALFAHSPRLQTLYATLVLPPEPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGA 212
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SYFHKYDQLEWLTVGHLTA PT+TAQRLETKGANHLFIFQRGNY+TPERRTF T + Y
Sbjct: 213 SYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGANHLFIFQRGNYITPERRTFATNDQY 272
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAK 14
VTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA+
Sbjct: 273 VTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQ 309
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 365 bits (938), Expect = 5e-99
Identities = 170/221 (76%), Positives = 193/221 (87%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKP+KLR+FHRGP H D FLNA++EPKDVPRYP DTVI + I T +AFMGDTLHF
Sbjct: 94 FLFMKPSKLRYFHRGPQHSDIFLNAYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
L PSF+T+LFA SPKLQTLYAT+VLPPEALYRLRSLYP++YTLTYS+DGFMYIPGGHAGA
Sbjct: 154 LEPSFITSLFARSPKLQTLYATMVLPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SY+HKYDQL+WLT G+L + T+TAQRLETKGANHLFIFQRG YLTPERRTFTT Y
Sbjct: 214 SYYHKYDQLQWLTAGYL-ISESTTVTAQRLETKGANHLFIFQRGRYLTPERRTFTTATSY 272
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
VTVP+IFLP N RTPI+KT+ MQ+FFYIKSVKE +ERD+
Sbjct: 273 VTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRERDL 313
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 293 bits (750), Expect = 3e-77
Identities = 141/233 (60%), Positives = 171/233 (73%), Gaps = 12/233 (5%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
F+FMKPAKL++ RGP H D F+N+ VEPKD+ RYP+ TV+ + I TSIAFMGDTLHF
Sbjct: 94 FMFMKPAKLQYLRRGPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
L+P FV LFA SPKL+T YAT+VLPPEAL+++ SLYPQIYTL Y E GF+Y PGGHAGA
Sbjct: 154 LTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLT--AANQP----------TITAQRLETKGANHLFIFQRGNYLT 161
SY+H+Y QL WL VG + N P +TAQR+ETKGANHLF+FQRG T
Sbjct: 214 SYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWAVTAQRIETKGANHLFVFQRGRLQT 273
Query: 160 PERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
P+ R+ T Y+TVP +FLP+K+N R P+ KTI QMF YIKSVK+ ERDI
Sbjct: 274 PQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDI 326
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 271 bits (693), Expect = 1e-70
Identities = 128/221 (57%), Positives = 160/221 (72%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMK AKL++F RG GD F+N EPKD RYP DT+ S + I T +AFMGDTLHF
Sbjct: 94 FLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
L P+F+T LF SP L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGA
Sbjct: 154 LEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SY H Y QL+WL VGH+ + + ITAQR+ETK ANHLF+F RG TP R+F Y
Sbjct: 214 SYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
T+P IFLP ++N RTP +KT + QMF Y+KS+K+ E D+
Sbjct: 274 CTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDL 314
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus]
gi|56792005|gb|AAW30448.1| viral replicase [Hydrangea
ringspot virus]
Length = 1386
Score = 271 bits (693), Expect = 1e-70
Identities = 128/221 (57%), Positives = 160/221 (72%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMK AKL++F RG GD F+N EPKD RYP DT+ S + I T +AFMGDTLHF
Sbjct: 94 FLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPLDTICSAIPPIQTQMAFMGDTLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGA 305
L P+F+T LF SP L TLYAT+VLPPEA ++LRSL+P +YTL Y +D F+Y+PGGHAGA
Sbjct: 154 LEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGA 213
Query: 304 SYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHY 125
SY H Y QL+WL VGH+ + + ITAQR+ETK ANHLF+F RG TP R+F Y
Sbjct: 214 SYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFIRGRLNTPPMRSFAPMRAY 273
Query: 124 VTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
T+P IFLP ++N RTP +KT + QMF Y+KS+K+ E D+
Sbjct: 274 CTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDL 314
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 269 bits (688), Expect = 5e-70
Identities = 132/227 (58%), Positives = 165/227 (72%), Gaps = 6/227 (2%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISR--LENIPTSIAFMGDTL 491
F+FMK +KL++F RGP D FLNAH+EPKDV RY DT+ + I T+ AFMGDTL
Sbjct: 94 FMFMKRSKLQYFRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTL 153
Query: 490 HFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHA 311
HFL + + +F SPKLQTLYAT+VLPPEAL+RL SL+P IY L + ++ F+Y PGGHA
Sbjct: 154 HFLPLTAIERIFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHA 213
Query: 310 GASYFHKYDQLEWLTVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTF 143
GA+Y HKY+QLEW+ VG A++ +T+Q LETKGANHLFIFQRG +LTPE R F
Sbjct: 214 GAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQILETKGANHLFIFQRGRFLTPELRCF 273
Query: 142 TTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
+T YVT+P IFLP+++N R PI KT Q+F Y+KSVK ERDI
Sbjct: 274 STETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDI 320
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 265 bits (677), Expect = 9e-69
Identities = 134/227 (59%), Positives = 162/227 (71%), Gaps = 6/227 (2%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVISRLENIPTSIAFMGDTLHF 485
FLFMKPAKLRFFHRGP H D F+N VEPKDV RY DT++S L + TS AFMGD+LHF
Sbjct: 94 FLFMKPAKLRFFHRGPQHNDHFINKVVEPKDVARYDPDTLVSSLPTLSTSHAFMGDSLHF 153
Query: 484 LSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSE------DGFMYIP 323
L SF+ LF+ + +L+TL AT+VLP EA + L S+YP IYTL Y F Y P
Sbjct: 154 LPFSFLVRLFSDNVQLKTLVATMVLPAEAKFNLASIYPNIYTLQYHRCKKGKVTHFSYAP 213
Query: 322 GGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANHLFIFQRGNYLTPERRTF 143
GGH GA Y H+ QL+WL+VG LT TITAQ++ETK ANHLFIFQRG+ +TP R F
Sbjct: 214 GGHKGAEYVHELKQLDWLSVGRLT-DGVTTITAQKIETKAANHLFIFQRGSLMTPCLRNF 272
Query: 142 TTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
+T +VT+P IFLPEK+N R PI KT++MQMF Y+K VK+ ERDI
Sbjct: 273 STETKFVTLPLIFLPEKFNARQPIRKTLVMQMFLYVKGVKQVSERDI 319
>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 262 bits (669), Expect = 8e-68
Identities = 129/227 (56%), Positives = 160/227 (70%), Gaps = 6/227 (2%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTSIAFMGDTL 491
FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDTL
Sbjct: 94 FLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSTTPEIQTRVAFIGDTL 153
Query: 490 HFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHA 311
HFL + +F S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHA
Sbjct: 154 HFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHA 213
Query: 310 GASYFHKYDQLEWLTVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTF 143
GASY H+Y QL+WL VG ++ +T+Q LETKGANHLF+FQRGN+ TP RTF
Sbjct: 214 GASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTF 273
Query: 142 TTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
+VT+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDI
Sbjct: 274 GVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDI 320
>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
Length = 1541
Score = 261 bits (667), Expect = 1e-67
Identities = 129/227 (56%), Positives = 160/227 (70%), Gaps = 6/227 (2%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTSIAFMGDTL 491
FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDTL
Sbjct: 94 FLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALEDLFKPSITPEIQTRVAFIGDTL 153
Query: 490 HFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHA 311
HFL + +F S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHA
Sbjct: 154 HFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHEKNFIYKPGGHA 213
Query: 310 GASYFHKYDQLEWLTVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTF 143
GASY H+Y QL+WL VG ++ +T+Q LETKGANHLF+FQRGN+ TP RTF
Sbjct: 214 GASYCHEYSQLQWLKVGKFEWCDKKYQKHHVTSQILETKGANHLFVFQRGNFATPTYRTF 273
Query: 142 TTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
+VT+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDI
Sbjct: 274 GVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDI 320
>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
Length = 1541
Score = 260 bits (665), Expect = 2e-67
Identities = 129/227 (56%), Positives = 160/227 (70%), Gaps = 6/227 (2%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTSIAFMGDTL 491
FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDTL
Sbjct: 94 FLFMKRSKLQYFHRGPQHGDLFLNAWIEPKDVTRYNLEDLFKPSITPEIQTRVAFIGDTL 153
Query: 490 HFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHA 311
HFL + +F S KLQTLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHA
Sbjct: 154 HFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHA 213
Query: 310 GASYFHKYDQLEWLTVGHLTAAN----QPTITAQRLETKGANHLFIFQRGNYLTPERRTF 143
GASY H+Y QL+WL VG + + +T+Q LETKGANHLF+FQRGN+ TP RTF
Sbjct: 214 GASYCHEYSQLQWLKVGKFEWCDKRYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTF 273
Query: 142 TTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
+VT+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDI
Sbjct: 274 GVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDI 320
>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
replicase [Alternanthera mosaic virus]
Length = 1541
Score = 260 bits (664), Expect = 3e-67
Identities = 128/227 (56%), Positives = 160/227 (70%), Gaps = 6/227 (2%)
Frame = -1
Query: 664 FLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDTVI--SRLENIPTSIAFMGDTL 491
FLFMK +KL++FHRGP HGD FLNA +EPKDV RY + + S I T +AF+GDTL
Sbjct: 94 FLFMKRSKLQYFHRGPQHGDLFLNAWIEPKDVTRYDLEDLFKPSITPEIQTRVAFIGDTL 153
Query: 490 HFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYPQIYTLTYSEDGFMYIPGGHA 311
HFL + +F +S KL TLYAT+VLPPEA++R+ S++P IY L + E F+Y PGGHA
Sbjct: 154 HFLPLGAIREIFTNSQKLHTLYATMVLPPEAMHRMHSIHPSIYELEFHERNFIYKPGGHA 213
Query: 310 GASYFHKYDQLEWLTVGHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTF 143
GASY H+Y QL+WL VG ++ +T+Q LETKGANHLF+FQRGN+ TP RTF
Sbjct: 214 GASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETKGANHLFVFQRGNFATPTYRTF 273
Query: 142 TTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDI 2
+VT+P IFLP+KYN R PI KT+ Q+F YIKSVK ERDI
Sbjct: 274 GVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSVKTVTERDI 320