BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00017994
         (1084 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXC31837.1| Transposon Ty3-I Gag-Pol polyprotein [Morus notab...   232   2e-84
emb|CAN61139.1| hypothetical protein VITISV_009489 [Vitis vinifera]   231   5e-81
gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexic...   237   4e-80
gb|EOY03146.1| Retrotransposon protein, putative [Theobroma cacao]    229   8e-80
emb|CAN83912.1| hypothetical protein VITISV_000582 [Vitis vinifera]   234   2e-78
gb|AAU10683.1| putative polyprotein [Oryza sativa Japonica Group]     234   5e-78
gb|ADN34141.1| ty3-gypsy retrotransposon protein [Cucumis melo s...   226   9e-78
gb|AAT85135.1| putative polyprotein [Oryza sativa Japonica Group]     238   1e-77
gb|AAX95749.1| Retrotransposon gag protein, putative [Oryza sati...   241   2e-77
gb|ABB46832.2| retrotransposon protein, putative, Ty3-gypsy subc...   243   3e-77
gb|AAK92604.1|AC078944_15 Putative retroelement [Oryza sativa Ja...   243   3e-77
gb|ABA98580.1| retrotransposon protein, putative, Ty3-gypsy subc...   243   1e-76
gb|ABA98439.1| retrotransposon protein, putative, Ty3-gypsy subc...   245   6e-76
gb|AAX95377.1| Retrotransposon gag protein, putative [Oryza sati...   233   1e-75
emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa Japonica Group]         246   2e-75
emb|CAE05353.3| OSJNBa0065J03.12 [Oryza sativa Japonica Group]        245   5e-75
emb|CAE75948.1| B1159F04.11 [Oryza sativa Japonica Group]             244   7e-75
emb|CAN83518.1| hypothetical protein VITISV_035077 [Vitis vinifera]   189   4e-72
gb|AAL69435.1|AC098565_17 Putative polyprotein [Oryza sativa] gi...   236   4e-72
gb|ABA94145.1| retrotransposon protein, putative, Ty3-gypsy subc...   219   7e-72

>gb|EXC31837.1| Transposon Ty3-I Gag-Pol polyprotein [Morus notabilis]
          Length = 1088

 Score =  232 bits (591), Expect(2) = 2e-84
 Identities = 108/188 (57%), Positives = 144/188 (76%)
 Frame = -1

Query: 592  GSPVLLSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYY 413
            G+PVL +KK +G+ RLC+DYR LN VTIKNKYPLP I+ELFDQL  +  +SK DL+ GY+
Sbjct: 473  GAPVLFAKKHDGSLRLCVDYRQLNRVTIKNKYPLPCINELFDQLGRSRYFSKIDLRSGYH 532

Query: 412  QLKIKKEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDI 233
            QL++++E + K AF+TRYG YEF+VMP GLTNAP  FMDLM+RVF PYLD+F+++FIDDI
Sbjct: 533  QLRVREEDVSKIAFRTRYGHYEFLVMPFGLTNAPAAFMDLMNRVFRPYLDRFIIVFIDDI 592

Query: 232  IVHSKSREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRSGDEDVMWEMEEE 53
            +++SK++E H  HL + L+ LREH LYAK  KC+FW+ +V FLGH+     DV +  +EE
Sbjct: 593  LIYSKTQEEHAEHLRIALQTLREHSLYAKKEKCDFWMTDVKFLGHV-----DVRFVWDEE 647

Query: 52   ILRQYPEL 29
                + EL
Sbjct: 648  CEEAFMEL 655



 Score =  108 bits (270), Expect(2) = 2e-84
 Identities = 64/173 (36%), Positives = 94/173 (54%), Gaps = 2/173 (1%)
 Frame = -2

Query: 1077 ANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMP-PIIS 901
            A+L +LP++ +D+ILGMD LS + A  DC+ + V L      V++   +     P P++ 
Sbjct: 312  ADLFVLPMAGFDVILGMDWLSKYHATVDCYRRRVTLLTKNGQVIDYQAKTGAVTPSPVLK 371

Query: 900  A-IKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAI 724
            A I  RK + +     + F +    +      VPIV ++ +VF  EL  +PPDR+++F I
Sbjct: 372  ACIGGRKNLESLG---MVFALGGESEANDSSYVPIVDDFQDVFPSELPGLPPDREIEFCI 428

Query: 723  EIFPGTASIARTPYRMAHVXXXXXXXXXXXLMEVGFIRPSTSPWEAQCFCQKK 565
            ++ PGT+ I+  PYRMA             LME GFIRPSTSPW A     KK
Sbjct: 429  DLVPGTSPISIAPYRMAPAKNVELRKQLQKLMEKGFIRPSTSPWGAPVLFAKK 481


>emb|CAN61139.1| hypothetical protein VITISV_009489 [Vitis vinifera]
          Length = 984

 Score =  231 bits (589), Expect(2) = 5e-81
 Identities = 105/156 (67%), Positives = 130/156 (83%)
 Frame = -1

Query: 592 GSPVLLSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYY 413
           G+P+L  KKK+G+ RLCIDYR LN V ++NKYPL RID+LFDQLQGA V+SK DLQ GY+
Sbjct: 145 GAPILFVKKKDGSMRLCIDYRELNKVIVRNKYPLSRIDDLFDQLQGACVFSKIDLQSGYH 204

Query: 412 QLKIKKEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDI 233
           QL ++ E +PKTAF+TRYG YEF+VMP GLTNAP  FMDLM+RVF PYLD+FV +FIDDI
Sbjct: 205 QLMVRSEDVPKTAFRTRYGHYEFLVMPFGLTNAPAAFMDLMNRVFKPYLDQFVAVFIDDI 264

Query: 232 IVHSKSREHHEHHLIMVLEALREHKLYAKFSKCEFW 125
           +++S+SRE HE HL +VL+ LR+ +LYAK  KCEFW
Sbjct: 265 LIYSRSREEHEGHLSIVLQTLRDKQLYAKLKKCEFW 300



 Score = 98.2 bits (243), Expect(2) = 5e-81
 Identities = 51/137 (37%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
 Frame = -2

Query: 1074 NLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPP-IISA 898
            +L+LL + ++D+ILGMD L+ + A  +C  K V     G+P      R  V  P  +ISA
Sbjct: 4    DLVLLDLQDFDVILGMDWLASYHASVNCFEKRVTFSIPGQPKFSFE-RKHVDRPLCMISA 62

Query: 897  IKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAIEI 718
            ++A   +  G  G+LA +++   D   + ++PIV EY +VF ++L  +PP+R+V+F I++
Sbjct: 63   LRASSLLKKGCQGFLASVMSNESDLK-LEDIPIVREYPDVFPEDLPGLPPEREVEFTIDL 121

Query: 717  FPGTASIARTPYRMAHV 667
             PGT  +++ PYRMA V
Sbjct: 122  VPGTGPMSKAPYRMAPV 138


>gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
          Length = 1604

 Score =  237 bits (605), Expect(2) = 4e-80
 Identities = 111/165 (67%), Positives = 137/165 (83%)
 Frame = -1

Query: 589  SPVLLSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQ 410
            +P L  +KK+GT+R+CIDYR LN VTIKNKYPLPRI++LFDQL+GA+V+SK DL+ GY+Q
Sbjct: 713  APALFVEKKDGTKRMCIDYRALNEVTIKNKYPLPRIEDLFDQLRGASVFSKIDLRSGYHQ 772

Query: 409  LKIKKEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDII 230
            L+I+   IPKTAF T+YGLYEF VM  GLTNAP  FM+LM+ VF  YLDKFV++FIDDI+
Sbjct: 773  LRIRPSDIPKTAFITKYGLYEFTVMSFGLTNAPAFFMNLMNSVFMDYLDKFVVVFIDDIL 832

Query: 229  VHSKSREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHI 95
            V+S+S E H  HL MVL+ LREH+LYAK SKCEFW++EV  LGHI
Sbjct: 833  VYSQSEEDHADHLRMVLQRLREHQLYAKLSKCEFWISEVLLLGHI 877



 Score = 89.0 bits (219), Expect(2) = 4e-80
 Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCK-LGKPVV-ELSGRARVSMPP 910
            F ANLI++     D+ILGM+ L  + A   C  +T+KL   LG+ VV EL       +PP
Sbjct: 565  FPANLIVMGTQGIDVILGMNWLDKYQAVISCDKRTIKLVSPLGEEVVTEL-------VPP 617

Query: 909  IISAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQF 730
                 + +K        Y   + +   D   I  + +VSE+ +VF ++L  +PP+RKV+F
Sbjct: 618  -----EPKKGSC-----YQMAVDSSEADP--IESIKVVSEFPDVFPKDLPGMPPERKVEF 665

Query: 729  AIEIFPGTASIARTPYRMAHVXXXXXXXXXXXLMEVGFIRPSTSPWEAQCFCQKKK 562
            AIE+ PGTA I++  YR++             L E G+IRPSTSPW A     +KK
Sbjct: 666  AIELLPGTAPISKRAYRISGPELVELKKQIDELSEKGYIRPSTSPWAAPALFVEKK 721


>gb|EOY03146.1| Retrotransposon protein, putative [Theobroma cacao]
          Length = 1480

 Score =  229 bits (585), Expect(2) = 8e-80
 Identities = 111/179 (62%), Positives = 140/179 (78%)
 Frame = -1

Query: 571  KKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIKKE 392
            K+   + R+C  +  LN VT+KNKYPLPRID+LFDQLQGA  +SK DL+ GY+QL+I+ E
Sbjct: 689  KELKDSWRIC--WIKLNKVTVKNKYPLPRIDDLFDQLQGAQCFSKIDLRSGYHQLRIRNE 746

Query: 391  GIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSKSR 212
             IPKTAF+TRYG YEF+VM  GLTNAP  FMDLM+RVF PYLDKFV++FIDDI+++SKSR
Sbjct: 747  DIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFKPYLDKFVVVFIDDILIYSKSR 806

Query: 211  EHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRSGDEDVMWEMEEEILRQYP 35
            E HE HL +VL+ LREH+LYAKFSKCEFWL  V FLGH+ S +   +   + E + ++P
Sbjct: 807  EEHEQHLKIVLQILREHRLYAKFSKCEFWLERVAFLGHVVSREGIQVDTKKIEAVEKWP 865



 Score = 95.9 bits (237), Expect(2) = 8e-80
 Identities = 48/134 (35%), Positives = 80/134 (59%)
 Frame = -2

Query: 1074 NLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPIISAI 895
            NL++L   ++D+ILGMD LS   A  DC++K V+    G+P   + G    +   +IS I
Sbjct: 551  NLVVLDTLDFDVILGMDWLSPCHASVDCYHKLVRFDFPGEPSFSIQGDMSNAPTNLISVI 610

Query: 894  KARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAIEIF 715
             AR+ +  G  GYLA + +       + +V +V E+++VF +EL+  PP+R+++F I++ 
Sbjct: 611  SARRLLRQGCIGYLAVVKDSQAKIGDVTQVSVVKEFVDVFPEELSGFPPEREIEFCIDLI 670

Query: 714  PGTASIARTPYRMA 673
            P T  ++  PYRMA
Sbjct: 671  PDTRPMSIPPYRMA 684


>emb|CAN83912.1| hypothetical protein VITISV_000582 [Vitis vinifera]
          Length = 1074

 Score =  234 bits (596), Expect(2) = 2e-78
 Identities = 107/170 (62%), Positives = 139/170 (81%)
 Frame = -1

Query: 592  GSPVLLSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYY 413
            G+PVL  KK +G+ RLCIDYR LN V ++NKYPLPRID+LF++LQGA V+SK DL+  Y+
Sbjct: 559  GAPVLFVKKNDGSMRLCIDYRELNKVMVRNKYPLPRIDDLFNELQGACVFSKIDLRSSYH 618

Query: 412  QLKIKKEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDI 233
            QL+I+ E +PKT+F+TRYG YEF+VM  GLTNAP  FMDLM+RVF PYLD+FV++FIDDI
Sbjct: 619  QLRIRSEDVPKTSFRTRYGHYEFLVMSFGLTNAPAAFMDLMNRVFKPYLDQFVVVFIDDI 678

Query: 232  IVHSKSREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRSGD 83
            +V+SKSR  HE HL +VL+ LR+ +LYAK  KCE WL++V+FLG + + D
Sbjct: 679  LVYSKSRXEHERHLSIVLQTLRDKQLYAKLKKCELWLDKVSFLGQVVTKD 728



 Score = 86.7 bits (213), Expect(2) = 2e-78
 Identities = 43/115 (37%), Positives = 69/115 (60%)
 Frame = -2

Query: 909 IISAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQF 730
           +ISA++A  ++     G+LA+++N+  D   + ++PIV  Y +VF ++L  +PP+R+V F
Sbjct: 454 MISALRASSSLRKCCQGFLAYVVNEENDLK-LEDIPIVRNYPDVFPEDLPGLPPEREVDF 512

Query: 729 AIEIFPGTASIARTPYRMAHVXXXXXXXXXXXLMEVGFIRPSTSPWEAQCFCQKK 565
            I++ PGT  I++ PYRMA +           L++ GFIR S SPW A     KK
Sbjct: 513 TIDVAPGTTPISKAPYRMAPLELKELKIQLQELLDKGFIRLSVSPWGAPVLFVKK 567


>gb|AAU10683.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1638

 Score =  234 bits (598), Expect(2) = 5e-78
 Identities = 108/161 (67%), Positives = 137/161 (85%)
 Frame = -1

Query: 577  LSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIK 398
            L++KK+ T+R+C+DYR LN VTIKNKYPLPRID+LFDQL+GA V+SK DL+ GY+QL+I+
Sbjct: 767  LAEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIR 826

Query: 397  KEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSK 218
            +E IPKTAF TRYGLYE  VM  GLTNAP  FM+LM++VF  +LDKFV++FIDDI+++SK
Sbjct: 827  EEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSK 886

Query: 217  SREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHI 95
            S E HE HL +VLE L+EH+LYAK SKC+FWL+EV FL H+
Sbjct: 887  SEEEHEQHLRLVLEKLKEHQLYAKSSKCDFWLSEVKFLRHV 927



 Score = 84.7 bits (208), Expect(2) = 5e-78
 Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLC-KLGKPVV---ELSGRARVSM 916
            F ANLILL   + D+ILGMD L+      DC N+TV L  + G+ VV    +S +  VS+
Sbjct: 638  FLANLILLGSKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKSPVSPKQGVSL 697

Query: 915  PPIISAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKV 736
              I   I                ++ + K+   + E+PIV EY  VF ++LTT+PP R++
Sbjct: 698  NQIEVEIP---------------VVTEEKNSRKLEEIPIVCEYPKVFPEDLTTMPPKREI 742

Query: 735  QFAIEIFPGTASIARTPYRMA 673
            +F I++ PGTA I + PYRMA
Sbjct: 743  EFRIDLAPGTAPIYKRPYRMA 763


>gb|ADN34141.1| ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]
          Length = 1359

 Score =  226 bits (577), Expect(2) = 9e-78
 Identities = 104/161 (64%), Positives = 133/161 (82%)
 Frame = -1

Query: 571 KKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIKKE 392
           KKK+ + RLCIDYR LN VT+KN+YPLP+ID+LFDQLQGAT++SK DL+ GY+QL+IK  
Sbjct: 497 KKKDRSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATLFSKIDLRSGYHQLRIKDR 556

Query: 391 GIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSKSR 212
            +PKTAF +RYG YEF+VM   LTNAP VFMDLM+RVF  +LD FV++FI+DI+++SK  
Sbjct: 557 DVPKTAFHSRYGHYEFIVMSFALTNAPSVFMDLMNRVFREFLDTFVIVFINDILIYSKIE 616

Query: 211 EHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRS 89
             HE HL MVL+ L+++KLYAKF KCEFWL +V+FLGH+ S
Sbjct: 617 AEHEEHLRMVLQTLQDNKLYAKFLKCEFWLKQVSFLGHVVS 657



 Score = 92.0 bits (227), Expect(2) = 9e-78
 Identities = 46/136 (33%), Positives = 79/136 (58%)
 Frame = -2

Query: 1080 DANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPIIS 901
            +  L++L + ++D+ILGMD L+ + A  DC  K +          +       S+P +IS
Sbjct: 354  EVTLLVLDMLDFDVILGMDWLAANHASIDCSRKEIAFNPPSMANFKFKEEGSRSLPKVIS 413

Query: 900  AIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAIE 721
            A++A K ++ G    LA +++  + +  +   P+V +Y +VF +EL  +PP R+++FAIE
Sbjct: 414  AMRASKLLSQGIWSILASVVDTREVDVSLSSKPMVRDYPDVFPEELPGLPPHREIEFAIE 473

Query: 720  IFPGTASIARTPYRMA 673
            +  GT  I+R PYRMA
Sbjct: 474  LELGTVPISRAPYRMA 489


>gb|AAT85135.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1038

 Score =  238 bits (607), Expect(2) = 1e-77
 Identities = 109/166 (65%), Positives = 140/166 (84%)
 Frame = -1

Query: 592 GSPVLLSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYY 413
           G+PV+  +KK+ T+R+C+DYR LN VTIKNKYPLPRID+LFDQL+GA V+SK DL+ GY+
Sbjct: 423 GAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYH 482

Query: 412 QLKIKKEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDI 233
           QL+I++E IPKTAF T YGL++  VM  GLTNAP  FM+LM++VF  +LDKFV++FIDDI
Sbjct: 483 QLRIREEDIPKTAFTTWYGLFKCTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDI 542

Query: 232 IVHSKSREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHI 95
           +++SKS E HE HL +VLE L+EH+LYAKFSKC+FWL EV FLGH+
Sbjct: 543 LIYSKSEEQHEQHLRLVLEKLKEHQLYAKFSKCDFWLLEVKFLGHV 588



 Score = 80.1 bits (196), Expect(2) = 1e-77
 Identities = 49/137 (35%), Positives = 73/137 (53%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPII 904
            F +NLILL   + D+ILGMD L+ H    DC ++T+ L       +     A     P +
Sbjct: 287  FLSNLILLESKDLDVILGMDWLTRHKGVIDCASRTITLTNDKGEKITFRSPA-----PQM 341

Query: 903  SAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAI 724
            S     +A T      +   + + +D      +PIV EY  VF ++LTT+PP R+++F I
Sbjct: 342  SVASLNQAATEDQTEIMEKSLKRLED------IPIVQEYPEVFPEDLTTMPPKREIEFWI 395

Query: 723  EIFPGTASIARTPYRMA 673
            ++ PGTA I + PYRMA
Sbjct: 396  DLAPGTAPIYKRPYRMA 412


>gb|AAX95749.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
            gi|110288789|gb|AAP52632.2| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1608

 Score =  241 bits (616), Expect(2) = 2e-77
 Identities = 111/163 (68%), Positives = 140/163 (85%)
 Frame = -1

Query: 577  LSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIK 398
            + ++K+ TQR+C+DYR LN+VTIKNKYPLPRID+LFDQL+GATV+SK DL+ GY+QL+IK
Sbjct: 763  VKRQKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIK 822

Query: 397  KEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSK 218
            +E IPKTAF TRYGL+E  VM  GLTNAP  FM+LM++VF  YLDKFV++FIDDI+++S+
Sbjct: 823  EEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSR 882

Query: 217  SREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRS 89
            ++E HE HL + LE LREH+LYAKFSKCEFWL EV FLGH+ S
Sbjct: 883  TKEEHEEHLRLALEKLREHQLYAKFSKCEFWLFEVKFLGHVIS 925



 Score = 75.9 bits (185), Expect(2) = 2e-77
 Identities = 48/137 (35%), Positives = 66/137 (48%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPII 904
            F ANLILL   + D+ILGMD L+ H    DC NK V L      VV +   +  S+   +
Sbjct: 645  FLANLILLESKDLDVILGMDWLAKHKGVIDCANKKVTLTSYDGRVVTVHALSSESLRSRL 704

Query: 903  SAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAI 724
            + I                          + E+PIV EY +VF  +L  +PP R ++F I
Sbjct: 705  NQIT-------------------------LEEIPIVREYPDVFPDDLPGMPPKRDIEFRI 739

Query: 723  EIFPGTASIARTPYRMA 673
            ++ PGT  I + PYRMA
Sbjct: 740  DLVPGTTPIHKRPYRMA 756


>gb|ABB46832.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1662

 Score =  243 bits (619), Expect(2) = 3e-77
 Identities = 111/163 (68%), Positives = 141/163 (86%)
 Frame = -1

Query: 577  LSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIK 398
            + ++K+ TQR+C+DYR LN+VTIKNKYPLPRID+LFDQL+GATV+SK DL+ GY+QL+IK
Sbjct: 822  VKRQKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIK 881

Query: 397  KEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSK 218
            +E IPKTAF TRYGL+E  VM  GLTNAP  FM+LM++VF  YLDKFV++FIDDI+++S+
Sbjct: 882  EEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNQVFMEYLDKFVVVFIDDILIYSR 941

Query: 217  SREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRS 89
            ++E HE HL + LE LREH+LYAKFSKCEFWL+EV FLGH+ S
Sbjct: 942  TKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVIS 984



 Score = 73.9 bits (180), Expect(2) = 3e-77
 Identities = 47/137 (34%), Positives = 66/137 (48%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPII 904
            F ANLILL   + D+ILGMD L+ H    DC N+ V L      VV +   +  S+   +
Sbjct: 704  FLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESLRSRL 763

Query: 903  SAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAI 724
            + I                          + E+PIV EY +VF  +L  +PP R ++F I
Sbjct: 764  NQIT-------------------------LEEIPIVREYPDVFPDDLPGMPPKRDIEFRI 798

Query: 723  EIFPGTASIARTPYRMA 673
            ++ PGT  I + PYRMA
Sbjct: 799  DLVPGTTPIHKRPYRMA 815


>gb|AAK92604.1|AC078944_15 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1571

 Score =  243 bits (619), Expect(2) = 3e-77
 Identities = 111/163 (68%), Positives = 141/163 (86%)
 Frame = -1

Query: 577  LSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIK 398
            + ++K+ TQR+C+DYR LN+VTIKNKYPLPRID+LFDQL+GATV+SK DL+ GY+QL+IK
Sbjct: 830  VKRQKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIK 889

Query: 397  KEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSK 218
            +E IPKTAF TRYGL+E  VM  GLTNAP  FM+LM++VF  YLDKFV++FIDDI+++S+
Sbjct: 890  EEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNQVFMEYLDKFVVVFIDDILIYSR 949

Query: 217  SREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRS 89
            ++E HE HL + LE LREH+LYAKFSKCEFWL+EV FLGH+ S
Sbjct: 950  TKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVIS 992



 Score = 73.9 bits (180), Expect(2) = 3e-77
 Identities = 47/137 (34%), Positives = 66/137 (48%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPII 904
            F ANLILL   + D+ILGMD L+ H    DC N+ V L      VV +   +  S+   +
Sbjct: 712  FLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSNDGRVVTVHALSSESLRSRL 771

Query: 903  SAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAI 724
            + I                          + E+PIV EY +VF  +L  +PP R ++F I
Sbjct: 772  NQIT-------------------------LEEIPIVREYPDVFPDDLPGMPPKRDIEFRI 806

Query: 723  EIFPGTASIARTPYRMA 673
            ++ PGT  I + PYRMA
Sbjct: 807  DLVPGTTPIHKRPYRMA 823


>gb|ABA98580.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1371

 Score =  243 bits (620), Expect(2) = 1e-76
 Identities = 111/163 (68%), Positives = 141/163 (86%)
 Frame = -1

Query: 577 LSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIK 398
           + ++K+ TQR+C+DYR LN+VTIKNKYPLPRID+LFDQL+GATV+SK DL+ GY+QL+IK
Sbjct: 476 VKRQKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIK 535

Query: 397 KEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSK 218
           +E IPKTAF TRYGL+E  VM  GLTNAP  FM+LM++VF  YLDKFV++FIDDI+++S+
Sbjct: 536 EEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSR 595

Query: 217 SREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRS 89
           ++E HE HL + LE LREH+LYAKFSKCEFWL+EV FLGH+ S
Sbjct: 596 TKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVIS 638



 Score = 71.6 bits (174), Expect(2) = 1e-76
 Identities = 45/136 (33%), Positives = 65/136 (47%)
 Frame = -2

Query: 1080 DANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPIIS 901
            DA  ++L   + D+ILGMD L+ H    DC NK V L      VV +   +  S+   ++
Sbjct: 359  DAPDVILESKDLDVILGMDWLARHKGVIDCANKKVTLTSYDGRVVTVHALSSESLRSRLN 418

Query: 900  AIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAIE 721
             I                          + E+PIV EY +VF  +L  +PP R ++F I+
Sbjct: 419  QIT-------------------------LEEIPIVREYPDVFPDDLPGMPPKRDIEFRID 453

Query: 720  IFPGTASIARTPYRMA 673
            + PGTA I + PYRMA
Sbjct: 454  LVPGTAPIHKRPYRMA 469


>gb|ABA98439.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1777

 Score =  245 bits (625), Expect(2) = 6e-76
 Identities = 113/161 (70%), Positives = 139/161 (86%)
 Frame = -1

Query: 571  KKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIKKE 392
            KKK+ T+R+C+DYR LN VTIKNKYPLPRID+LFDQL+GATV+SK DL+ GY+QL+I++E
Sbjct: 884  KKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREE 943

Query: 391  GIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSKSR 212
             IPKTAF TRYGLYEF VM  GLTNAP  FM+LM++VF  YLDKFV++FIDDI+++S+S 
Sbjct: 944  DIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQSE 1003

Query: 211  EHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRS 89
            E H+HHL +VL  LREH+LYAK SKCEFWL+EV FLGH+ S
Sbjct: 1004 EDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 1044



 Score = 67.4 bits (163), Expect(2) = 6e-76
 Identities = 47/159 (29%), Positives = 73/159 (45%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPII 904
            F ++LILL     D+ILGM+ L+      DC  +TV L              R    P++
Sbjct: 750  FPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLY-------------RGPEQPVV 796

Query: 903  SAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAI 724
                +    ++  H            +  + E+PIV E+ +VF +EL  +PP R+++F I
Sbjct: 797  FFAPSTSVRSSELH------------QIELSEIPIVREFGDVFPEELPGMPPKREIEFRI 844

Query: 723  EIFPGTASIARTPYRMAHVXXXXXXXXXXXLMEVGFIRP 607
            ++ PGT  + + PYRMA             L E G+IRP
Sbjct: 845  DLAPGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRP 883


>gb|AAX95377.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
            gi|62733997|gb|AAX96106.1| retrotransposon protein,
            putative, Ty3-gypsy sub-class [Oryza sativa Japonica
            Group] gi|77550108|gb|ABA92905.1| retrotransposon
            protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1261

 Score =  233 bits (595), Expect(2) = 1e-75
 Identities = 106/159 (66%), Positives = 137/159 (86%)
 Frame = -1

Query: 571  KKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIKKE 392
            +KK+ T+R+C+DYR LN VTIKNKYPLPR+D+LFDQL+GA V+SK DL+ GY+QL+I++E
Sbjct: 583  QKKDRTKRMCVDYRALNEVTIKNKYPLPRLDDLFDQLKGAKVFSKIDLRSGYHQLRIREE 642

Query: 391  GIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSKSR 212
             IPKTAF TRYGLYE +VM  GLTNAP  FM+ M++VF  +LDKFV++FIDDI+++SKS 
Sbjct: 643  DIPKTAFTTRYGLYECMVMSFGLTNAPAFFMNPMNKVFMEFLDKFVVVFIDDILIYSKSE 702

Query: 211  EHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHI 95
            E +E HL +VLE L+EH+LYAKFSKC+FWL+EV FLGH+
Sbjct: 703  EEYEQHLRLVLEKLKEHQLYAKFSKCDFWLSEVKFLGHV 741



 Score = 77.8 bits (190), Expect(2) = 1e-75
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLC-KLGKPVVELSGRARVSMPPI 907
            F ANLILL   + D+ILGMD L+      DC N+TV L  + G+ VV  S          
Sbjct: 448  FLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETVVYKS---------- 497

Query: 906  ISAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFA 727
               +  ++ I+         +  + K    + ++PIV EY  VF ++LTT+PP R+++F 
Sbjct: 498  --LVSPKQGISLNQIEVENLVATEEKSSRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFR 555

Query: 726  IEIFPGTASIARTPYRMA 673
            +++ PGT  I +  YRMA
Sbjct: 556  VDLAPGTTPIYKRSYRMA 573


>emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa Japonica Group]
          Length = 1699

 Score =  246 bits (628), Expect(2) = 2e-75
 Identities = 113/165 (68%), Positives = 142/165 (86%)
 Frame = -1

Query: 577  LSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIK 398
            L++KK+ T+R+C+DYR LN VTIKNKYPLPRID+LFDQL+GATV+SK DL+ GY+QL+I+
Sbjct: 903  LAEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIR 962

Query: 397  KEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSK 218
            +E IPKTAF TRYGLYEF VM  GLTNAP  FM+LM++VF  YLDKFV++FIDDI+++S+
Sbjct: 963  EEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQ 1022

Query: 217  SREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRSGD 83
            S E H+HHL +VL  LREH+LYAK SKCEFWL+EV FLGH+ S +
Sbjct: 1023 SEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAE 1067



 Score = 64.3 bits (155), Expect(2) = 2e-75
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCK-LGKPVVELSGRARVSMPPI 907
            F ++LILL     D+ILGM+ L+      DC  +TV L +   +PVV  +       PP 
Sbjct: 788  FPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA-------PP- 839

Query: 906  ISAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFA 727
             +++++ +    G                 + E+PIV E+ +VF +EL  +PP R+++F 
Sbjct: 840  -TSVRSSELHQIG-----------------LSEIPIVGEFGDVFPEELPGMPPKREIEFR 881

Query: 726  IEIFPGTASIARTPYRMA 673
            I++ PGT  + + PYRMA
Sbjct: 882  IDLAPGTTPLYKRPYRMA 899


>emb|CAE05353.3| OSJNBa0065J03.12 [Oryza sativa Japonica Group]
          Length = 1599

 Score =  245 bits (626), Expect(2) = 5e-75
 Identities = 113/163 (69%), Positives = 141/163 (86%)
 Frame = -1

Query: 577  LSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIK 398
            L++KK+ T+R+C+DYR LN VTIKNKYPLPRID+LFDQL+GATV+SK DL+ GY+QL+I+
Sbjct: 831  LAEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIR 890

Query: 397  KEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSK 218
            +E IPKTAF TRYGLYEF VM  GLTNAP  FM+LM++VF  YLDKFV++FIDDI+++S+
Sbjct: 891  EEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQ 950

Query: 217  SREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRS 89
            S E H+HHL +VL  LREH+LYAK SKCEFWL+EV FLGH+ S
Sbjct: 951  SEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 993



 Score = 63.9 bits (154), Expect(2) = 5e-75
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGK-PVVELSGRARVSMPPI 907
            F ++LILL     D+ILGM+ L+      DC  +TV L +  + PVV  +    VS   +
Sbjct: 716  FPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYREPEQPVVFFAPPTSVSSSEL 775

Query: 906  ISAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFA 727
                                       +  + E+PIV E+ +VF +EL  +PP R+++F 
Sbjct: 776  --------------------------HQIGLSEIPIVREFGDVFPEELPGMPPKREIEFR 809

Query: 726  IEIFPGTASIARTPYRMA 673
            I++ PGT  + + PYRMA
Sbjct: 810  IDLAPGTTPLYKRPYRMA 827


>emb|CAE75948.1| B1159F04.11 [Oryza sativa Japonica Group]
          Length = 1679

 Score =  244 bits (624), Expect(2) = 7e-75
 Identities = 112/165 (67%), Positives = 141/165 (85%)
 Frame = -1

Query: 577  LSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIK 398
            L++KK+ T+R+C+DYR LN VTIKNKYPLPRID+LFDQL+G TV+SK DL+ GY+QL+I+
Sbjct: 883  LAEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGTTVFSKIDLRSGYHQLRIR 942

Query: 397  KEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSK 218
            +E IPKTAF TRYGLYEF VM  GLTNAP  FM+LM++VF  YLDKFV++FIDDI+++S+
Sbjct: 943  EEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSQ 1002

Query: 217  SREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRSGD 83
            S E H+HHL +VL  LREH+LYAK SKCEFWL+EV FLGH+ S +
Sbjct: 1003 SEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAE 1047



 Score = 64.3 bits (155), Expect(2) = 7e-75
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCK-LGKPVVELSGRARVSMPPI 907
            F ++LILL     D+ILGM+ L+      DC  +TV L +   +PVV  +       PP 
Sbjct: 768  FPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA-------PP- 819

Query: 906  ISAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFA 727
             +++++ +    G                 + E+PIV E+ +VF +EL  +PP R+++F 
Sbjct: 820  -TSVRSSELHQIG-----------------LSEIPIVGEFGDVFPEELPGMPPKREIEFR 861

Query: 726  IEIFPGTASIARTPYRMA 673
            I++ PGT  + + PYRMA
Sbjct: 862  IDLAPGTTPLYKRPYRMA 879


>emb|CAN83518.1| hypothetical protein VITISV_035077 [Vitis vinifera]
          Length = 1194

 Score =  189 bits (479), Expect(2) = 4e-72
 Identities = 92/167 (55%), Positives = 117/167 (70%)
 Frame = -1

Query: 592 GSPVLLSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYY 413
           G+PVL  KK +G+ RLCIDYR LN V ++NKYPLP ID+LFDQLQ A V+SK DL+ GY+
Sbjct: 436 GAPVLFVKKNDGSMRLCIDYRELNKVIVRNKYPLPWIDDLFDQLQDACVFSKIDLRSGYH 495

Query: 412 QLKIKKEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDI 233
           QL+I+ E +PK AF+TRYG YEF+VM  GLTNAP  FMDLM+R                 
Sbjct: 496 QLRIRSEDVPKIAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNR----------------- 538

Query: 232 IVHSKSREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIR 92
                SR+ HE +L +VL+ LR+ +LYAK  KCE WL++V+FLGH+R
Sbjct: 539 -----SRDEHERYLSIVLQTLRDKQLYAKLKKCELWLDKVSFLGHVR 580



 Score =  110 bits (276), Expect(2) = 4e-72
 Identities = 58/170 (34%), Positives = 98/170 (57%)
 Frame = -2

Query: 1074 NLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPIISAI 895
            +L+LL + ++D+ILGM+ L+ + A  DC  K V      +P     G+       +ISA+
Sbjct: 276  DLVLLDLQDFDVILGMNWLASYHASIDCFGKIVTFNIPSRPDFGFEGKHVDKPLHMISAL 335

Query: 894  KARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAIEIF 715
            +A   +  G  G+LA+++N+ ++   + ++PIV +Y +VF  +L  +PP+++V+F I++ 
Sbjct: 336  QASSLLRKGCQGFLAYVMNE-ENNLKLEDIPIVRDYPDVFPDDLPGLPPEKEVEFTIDVA 394

Query: 714  PGTASIARTPYRMAHVXXXXXXXXXXXLMEVGFIRPSTSPWEAQCFCQKK 565
             GT  I++ PYRMA +           L++ GFIRPS SPW A     KK
Sbjct: 395  LGTTPISKAPYRMAPLELKELKIQLQELLDKGFIRPSVSPWGAPVLFVKK 444


>gb|AAL69435.1|AC098565_17 Putative polyprotein [Oryza sativa] gi|22725905|gb|AAN04915.1|
           Putative polyprotein [Oryza sativa Japonica Group]
           gi|31430208|gb|AAP52154.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1156

 Score =  236 bits (601), Expect(2) = 4e-72
 Identities = 110/163 (67%), Positives = 138/163 (84%)
 Frame = -1

Query: 577 LSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYYQLKIK 398
           L++KK+ T+R+C+DYR LN VTIKNKYPLPRID+LFDQL+GATV+SK DL+ GY+QL+I+
Sbjct: 503 LAEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIR 562

Query: 397 KEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDIIVHSK 218
           +E IPKTAF +RYGLYEF VM  GLTNAP  FM+LM +VF   LDKFV++FIDDI+++S+
Sbjct: 563 EEDIPKTAFTSRYGLYEFTVMSFGLTNAPAFFMNLMDKVFMENLDKFVVVFIDDILMYSQ 622

Query: 217 SREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHIRS 89
           S E H+ HL +VL  LREH+LYAK SKCEFWL+EV FLGH+ S
Sbjct: 623 SEEDHQQHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVIS 665



 Score = 63.9 bits (154), Expect(2) = 4e-72
 Identities = 42/137 (30%), Positives = 65/137 (47%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKLCKLGKPVVELSGRARVSMPPII 904
            F ++LILL     D+ILGM  L+      DC  +TV L              R    P++
Sbjct: 388  FPSDLILLDTKNLDVILGMKWLAQFQGVVDCARRTVTLY-------------RGPEQPVV 434

Query: 903  SAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFAI 724
                   A ++  H            +  + E+PIV E+ +VF +EL  +PP R+++F I
Sbjct: 435  FFAPPTSASSSELH------------QIGLSEIPIVREFGDVFPEELLGMPPKREIEFRI 482

Query: 723  EIFPGTASIARTPYRMA 673
            ++ PGT  + + PYRMA
Sbjct: 483  DLAPGTTPLYKRPYRMA 499


>gb|ABA94145.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 927

 Score =  219 bits (559), Expect(2) = 7e-72
 Identities = 100/166 (60%), Positives = 130/166 (78%)
 Frame = -1

Query: 592 GSPVLLSKKKNGTQRLCIDYRGLNNVTIKNKYPLPRIDELFDQLQGATVYSKFDLQQGYY 413
           G+PV+ ++KK+G+ R+C+DYR LN  TIKNKYPLPRI++LFDQL+GA V+SK DLQ GY 
Sbjct: 222 GAPVIFTEKKDGSWRMCVDYRALNATTIKNKYPLPRIEDLFDQLKGAKVFSKIDLQSGYN 281

Query: 412 QLKIKKEGIPKTAFQTRYGLYEFVVMPVGLTNAPVVFMDLMHRVF*PYLDKFVMIFIDDI 233
           Q+++++E I KTAF TRYG YE+ VM  GLTNAP  FM+ M+ +   +LD F+++FIDDI
Sbjct: 282 QIRVREEDIEKTAFSTRYGHYEYRVMSFGLTNAPAYFMEAMNSMLHSFLDNFMVVFIDDI 341

Query: 232 IVHSKSREHHEHHLIMVLEALREHKLYAKFSKCEFWLNEVTFLGHI 95
           +++SK  E HE HL MVL  LRE+K YAK  KCEFWL EV FLGH+
Sbjct: 342 LIYSKDVEEHERHLRMVLGTLRENKFYAKLKKCEFWLPEVAFLGHV 387



 Score = 79.3 bits (194), Expect(2) = 7e-72
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
 Frame = -2

Query: 1083 FDANLILLPISEYDIILGMD*LSGHFAQTDCHNKTVKL-CKLGKPVVELSGRARVSMPPI 907
            F ANLI++P+  +D+ILGMD L+ + A   C  KT+ L    GK +V        S+  +
Sbjct: 85   FVANLIVIPLPLFDVILGMDWLNRYRAVISCFWKTITLEAPSGKEMVFQGSAPPHSLFVM 144

Query: 906  ISAIKARKAITNGAHGYLAFIINKPKDET*IHEVPIVSEYLNVFSQELTTIPPDRKVQFA 727
                  ++A+  G    LA   +KP     I +VP+V +Y +VF  EL  +PP+R V+F 
Sbjct: 145  SRLFPGQRAVKTGLLWALAKKSSKPLV---IEDVPVVRDYPDVFPAELPGMPPERDVEFR 201

Query: 726  IEIFPGTASIARTPYRMA 673
            I++ P T  I+R PYR++
Sbjct: 202  IDLVPSTQPISRAPYRVS 219