BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00017332
         (4904 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subc...   816   0.0  
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         816   0.0  
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc...   816   0.0  
gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group...   816   0.0  
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s...   815   0.0  
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-...   815   0.0  
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   815   0.0  
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ...   815   0.0  
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc...   815   0.0  
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   815   0.0  
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   815   0.0  
gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japo...   815   0.0  
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...   814   0.0  
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         814   0.0  
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc...   814   0.0  
gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group...   814   0.0  
emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group] gi...   813   0.0  
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc...   813   0.0  
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         813   0.0  
gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]     813   0.0  

>gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  816 bits (2109), Expect = 0.0
 Identities = 430/961 (44%), Positives = 589/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V     +E   +   K  E  T+         
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPEEVLTAEQQKQFEEATTLFV------ 62

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSNGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYEYGGLFRFSLSDFCNKSVNHICGTVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCL KVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLVKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTNSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  816 bits (2109), Expect = 0.0
 Identities = 432/961 (44%), Positives = 590/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQIGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            TFIDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L++WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRIWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEV ++    IIESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVLDMHVGTIIESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  816 bits (2108), Expect = 0.0
 Identities = 431/961 (44%), Positives = 589/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAT77367.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|51854387|gb|AAU10767.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  816 bits (2108), Expect = 0.0
 Identities = 431/961 (44%), Positives = 589/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
            Group]
          Length = 1911

 Score =  815 bits (2105), Expect = 0.0
 Identities = 430/961 (44%), Positives = 589/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFV+ G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  815 bits (2105), Expect = 0.0
 Identities = 430/961 (44%), Positives = 589/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFV+ G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  815 bits (2105), Expect = 0.0
 Identities = 429/966 (44%), Positives = 604/966 (62%), Gaps = 9/966 (0%)
 Frame = +1

Query: 1339 SLSSKPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTK 1518
            S   KPEKF G NF  WQQ+M F+LT L L   +     +  E       +  ++ D  K
Sbjct: 36   SPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDE--HDIQVISAIDAWK 93

Query: 1519 EXXXXXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVS 1698
                           C   +++ L+DS+Y ++S  K+A ELW +LD +Y T + G K+  
Sbjct: 94   HSDFL----------CRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFV 143

Query: 1699 IDEWLDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGL 1878
            +  +LD++MVD+K+V  Q+ E + +++++ A+G+  S++  V+++I+KLPP+W DF   L
Sbjct: 144  VGRFLDYKMVDSKTVVSQVQELQVILHEIHAEGMMLSETFQVAAIIEKLPPAWKDFKNYL 203

Query: 1879 KHKPENFSLDELFVALRIE-DRHRSFQQTKKPVFQAKALIVENXXXXXXXXXXXXXXXXX 2055
            KHK +  S+++L + LRIE D  RS ++    + +AKA  VE+                 
Sbjct: 204  KHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKTNNNKGKGSK 263

Query: 2056 XXXXXXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKP-QANV 2232
                                Q +C+ CG+  H          ++   + P  +KP +ANV
Sbjct: 264  LGPKGGISKKPKF-------QGKCFNCGKQGH----------KSVDCRLPKKNKPKEANV 306

Query: 2233 VTVGAASDSPANRYFVSNP----ELNTI-FNSNDWWIDSGANVHVCADKNYFLSYQ-VSG 2394
            +      D   N Y +       E+N +  N  +WWID+GA  HVC+DK  F +++ +  
Sbjct: 307  I-----DDITKNVYDIDLTAVVSEVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIEN 361

Query: 2395 TRTVSMGNGSVARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVF 2574
               V MGN + + + G+G+V L ++SGK L+L  V ++P+IRKNL+S SLL  +G+++VF
Sbjct: 362  GEKVFMGNSATSEIKGQGKVILKMTSGKELTLTNVLYVPEIRKNLVSGSLLNNHGFRLVF 421

Query: 2575 ESNKVVISRHGQFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVN 2754
             SNKVV+S+ G ++GKG+M DG+++                    +E  + WHGRLGHVN
Sbjct: 422  XSNKVVLSKSGMYVGKGYMSDGMWKLNVMTIIKSNMNKASTSTYMLESSNLWHGRLGHVN 481

Query: 2755 SRTIKRMMHLDLIPKTSINVKEKCEICVQAKQPRKPHKSVDKETMLLGLIHSDICDSNHV 2934
              T++R+++L+ IP   IN   KCE CV+AK  R   +SV++ T  L LIHSDICD   V
Sbjct: 482  YDTLRRLINLNHIPTFQINSNHKCETCVEAKLTRSSFQSVERNTEPLDLIHSDICDLKFV 541

Query: 2935 LTRGGNQYFITFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGE 3114
             TRGGN+YFITF+DD +KYCYVYL+ +K    +KF  YK EVENQL KKIK+LRSDRGGE
Sbjct: 542  QTRGGNKYFITFVDDSTKYCYVYLLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGE 601

Query: 3115 YASDEMTDFCKLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEAL 3294
            Y S    D C  HGI+HE T  YSPQSNGVAERKNRTL +M+NAML+SS LP+N WGEA+
Sbjct: 602  YESP-FVDICAQHGIIHETTAPYSPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWGEAI 660

Query: 3295 YSACLILNRVPYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCV 3474
             +A  +LN+VP K ++KTPYELWK +KP+  +L++WGCLAKV +P  KK KIGPKT+DC+
Sbjct: 661  LTANYLLNKVPKKKAEKTPYELWKGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPKTIDCI 720

Query: 3475 FVGYSSNSPTYRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXX 3654
            F+GY+ NS  YRFLV+ S +P+I  N I+ESR+A FFE++FP K K   P  +       
Sbjct: 721  FIGYAHNSNAYRFLVYESNIPDIHKNTIMESRNASFFEDVFPCKSK-EEPSSSKRMLESQ 779

Query: 3655 XXXPTIFNEE-PIEPRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVN 3831
                   NEE  +EPRRSKR R  K+FG DF TF+LE +P+T+ +A+ S +   WKEA+ 
Sbjct: 780  DQ-----NEEVEVEPRRSKRVRTEKSFGPDFLTFMLEGEPQTFKEAVNSTEGLMWKEAIK 834

Query: 3832 DEMNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDF 4011
             E++S+  N TW L DLPPGCKP+ SKWIFK+K+++DGSI+KYKARLV+KG+ Q  G+D+
Sbjct: 835  SEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQTEGLDY 894

Query: 4012 FDTYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEK 4191
            FDTYSPV++I +IRM++AIA++  L IHQMD+K          EIYM QPEGF   G+EK
Sbjct: 895  FDTYSPVTRINSIRMVLAIAALRNLEIHQMDMK----------EIYMEQPEGFSAPGQEK 944

Query: 4192 KICNKV 4209
            K+C  V
Sbjct: 945  KVCKLV 950


>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
            sativa Japonica Group]
          Length = 1460

 Score =  815 bits (2105), Expect = 0.0
 Identities = 430/961 (44%), Positives = 589/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFV+ G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  815 bits (2105), Expect = 0.0
 Identities = 430/961 (44%), Positives = 590/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V         E   T   +    + TT     
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTG----KPEGILTAEQQKQFEEATTLFV-- 62

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  +               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHNGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV+ E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVHSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  815 bits (2105), Expect = 0.0
 Identities = 430/961 (44%), Positives = 589/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFV+ G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  815 bits (2105), Expect = 0.0
 Identities = 430/961 (44%), Positives = 589/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFV+ G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAK71544.1|AC087852_4 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  815 bits (2105), Expect = 0.0
 Identities = 430/961 (44%), Positives = 590/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V         E   T   +    + TT     
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTG----KPEGILTAEQQKQFEEATTLFV-- 62

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 63   -------------GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAQEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  +               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHNGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV+ E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVHSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  814 bits (2103), Expect = 0.0
 Identities = 431/961 (44%), Positives = 588/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +   ++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKVLELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  814 bits (2103), Expect = 0.0
 Identities = 429/961 (44%), Positives = 588/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTMWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPSVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL+++I  LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRRINRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNYVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  814 bits (2103), Expect = 0.0
 Identities = 431/961 (44%), Positives = 588/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +   ++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKVLELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAT69606.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53749238|gb|AAU90098.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  814 bits (2103), Expect = 0.0
 Identities = 430/961 (44%), Positives = 589/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDANYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFV+ G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVLEGQECKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group]
            gi|38345937|emb|CAD41412.2| OSJNBb0078D11.12 [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  813 bits (2101), Expect = 0.0
 Identities = 430/961 (44%), Positives = 587/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+H D+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHLDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK  ++A  S DA +WKEAV  E
Sbjct: 754  HELISEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKLISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1320

 Score =  813 bits (2100), Expect = 0.0
 Identities = 430/961 (44%), Positives = 588/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  W EAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWREALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 753

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  813 bits (2100), Expect = 0.0
 Identities = 429/961 (44%), Positives = 587/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 9    RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 53

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 54   FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 109

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 110  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 169

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 170  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 229

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 230  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 278

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WW+D+GANVHVCAD + F SYQV+   TV MGNGS 
Sbjct: 279  TGDGSG---YGNLPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSH 335

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 336  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 395

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 396  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 453

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+  +  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 454  LIPKFSIVKSSKCHSCVQSKQPRKPHKAAKERNLAPLELLHSDLCEMNGVLTKGGKRYFM 513

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAE+ENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 514  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEIENQLDRKIKRLRSDRGGEFFSNEFDLFC 573

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 574  EEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 633

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 634  PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 693

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSR--------PVGACXXXXXXXX 3660
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S         P            
Sbjct: 694  YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPSEQTEHT 753

Query: 3661 XPTIFNEEPIE-PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
               +  E+  E PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEA+  E
Sbjct: 754  HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAICSE 813

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 814  MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 873

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 874  TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 933

Query: 4198 C 4200
            C
Sbjct: 934  C 934


>gb|AAT93940.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1861

 Score =  813 bits (2099), Expect = 0.0
 Identities = 430/961 (44%), Positives = 588/961 (61%), Gaps = 11/961 (1%)
 Frame = +1

Query: 1351 KPEKFDGKNFLCWQQQMKFWLTELGLFSVILNGLKENGESSATKSTETPTSKDTTKEXXX 1530
            +P+KF G +F  WQ ++  WLT +  F V               ST  P    T ++   
Sbjct: 423  RPDKFTGVHFKRWQIRVTLWLTAMKCFWV---------------STGKPEGVLTAEQQKQ 467

Query: 1531 XXXXXXXXXXXCHGRILSALSDSIYRIFSHTKSALELWNALDYRYGTAEKGLKRVSIDEW 1710
                         G ILS L D +  ++ H   A ELW+AL+ ++G  +       ++++
Sbjct: 468  FEEATTLFV----GCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQF 523

Query: 1711 LDFQMVDTKSVSDQLIEFENLIYDMKAKGVEQSDSVYVSSLIKKLPPSWSDFARGLKHKP 1890
             D++M D +SV +Q  E + +  +++       D      +I KLPPSW  F   LKHK 
Sbjct: 524  HDYKMADNRSVVEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKR 583

Query: 1891 ENFSLDELFVALRIEDRHRSFQQTKK-PVFQAKALIVENXXXXXXXXXXXXXXXXXXXXX 2067
            + +S++ L  +L +E++ R      K    Q+ A +V                       
Sbjct: 584  QEYSVEGLIASLDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQK 643

Query: 2068 XXXXXXXXXXXXXXXSQVQCWVCGRTNHIAKNYFHRHGQNNQSKPPSTSKPQANVVTVGA 2247
                            +  C+VCG+  H+A+    R G     K P+    ++  VT+G 
Sbjct: 644  KNNNNPNQ-------DERTCFVCGQVGHLARKCPQRKGM----KAPAGQTSKSANVTIGN 692

Query: 2248 ASDSPANRYFVSNPELNTIFNSNDWWIDSGANVHVCADKNYFLSYQVSGTRTVSMGNGSV 2427
              D      + + P + ++  S +WWID+GAN+HVCAD + F SYQV+   TV MGNGS 
Sbjct: 693  TGDGSG---YGNLPTVFSVNQSTNWWIDTGANIHVCADISLFSSYQVARGSTVLMGNGSH 749

Query: 2428 ARVLGEGQVQLTLSSGKVLSLDGVCHIPDIRKNLISASLLVRNGYKVVFESNKVVISRHG 2607
            A V G G V L  +SGK++ L  V H+P I +NL+S S L R+G+K+VFESNKVV+S+HG
Sbjct: 750  ASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHG 809

Query: 2608 QFIGKGFMLDGLFRXXXXXXXXXXXXXXXXXIANVECCDTWHGRLGHVNSRTIKRMMHLD 2787
             FIGKG+   GLFR                 + +    + WH RL H+N   + R+  + 
Sbjct: 810  YFIGKGYECGGLFRFSLSDFCNKSVNHICGSVDDE--ANVWHSRLCHINFGLMSRLSSMC 867

Query: 2788 LIPKTSINVKEKCEICVQAKQPRKPHKSVDKETML-LGLIHSDICDSNHVLTRGGNQYFI 2964
            LIPK SI    KC  CVQ+KQPRKPHK+ ++  +  L L+HSD+C+ N VLT+GG +YF+
Sbjct: 868  LIPKFSIVKGSKCHSCVQSKQPRKPHKAAEERNLAPLELLHSDLCEMNGVLTKGGKRYFM 927

Query: 2965 TFIDDFSKYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMTDFC 3144
            T IDD +++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC
Sbjct: 928  TLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFC 987

Query: 3145 KLHGIVHEVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRV 3324
            + HGI+HE TP  SP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRV
Sbjct: 988  EEHGIIHERTPPCSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRV 1047

Query: 3325 PYKNSDKTPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPT 3504
            P +N DKTPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  
Sbjct: 1048 PNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIA 1107

Query: 3505 YRFLVFNSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXXP------ 3666
            YRFL+  SEVP++    I+ESRDA FFE+ FPMKD  S               P      
Sbjct: 1108 YRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHT 1167

Query: 3667 -TIFNEEPIE--PRRSKRSRKAKNFGDDFYTFLLEDDPKTYNDAMLSLDAPFWKEAVNDE 3837
              + +EE +   PRRSKR R AK+FGDDF  +L++D PK+ ++A  S DA +WKEAV  E
Sbjct: 1168 HELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTPKSISEAYASPDADYWKEAVRSE 1227

Query: 3838 MNSLFINKTWVLTDLPPGCKPIGSKWIFKKKLRIDGSIEKYKARLVVKGFEQKPGIDFFD 4017
            M+S+  N TW +T+ P GCKP+G KW+FKKKLR DG+IEKYKARLV KG+ QK G DFFD
Sbjct: 1228 MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFD 1287

Query: 4018 TYSPVSKITTIRMLIAIASVYKLGIHQMDVKTAFLNGDLEEEIYMNQPEGFVVAGEEKKI 4197
            TYSPV+++TTIR+L+++A+ + L +HQMDVKTAFLNG+L+EEIYM+QP+GFVV G+E K+
Sbjct: 1288 TYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKV 1347

Query: 4198 C 4200
            C
Sbjct: 1348 C 1348