BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00016882
         (1256 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624...   395   e-107
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   394   e-107
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   391   e-106
emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]   388   e-105
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   386   e-105
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   385   e-104
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]   385   e-104
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   384   e-104
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   382   e-103
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]   382   e-103
gb|AAB82754.1| retrofit [Oryza longistaminata]                        379   e-102
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   379   e-102
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  378   e-102
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   376   e-102
emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]   374   e-101
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   374   e-101
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   372   e-100
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   370   e-100
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   370   e-100
emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]   369   2e-99

>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
          Length = 1682

 Score =  395 bits (1014), Expect = e-107
 Identities = 196/397 (49%), Positives = 264/397 (66%), Gaps = 1/397 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLK-CXXXX 179
            DVNNAFL+G L E VYM QP GFID ++P HVCKL KA+YGLKQAP+AW ++LK      
Sbjct: 432  DVNNAFLNGILVEDVYMGQPEGFIDPSRPLHVCKLKKALYGLKQAPRAWFERLKDAMVVK 491

Query: 180  XXXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEV 359
                         Y+  G               TG   K +  VI  +   F+LK LG++
Sbjct: 492  WGFQNSRSDNSLFYKWIGDQVIFVLVYVDDIIITGSSDKMVQQVITNMQNAFALKDLGKL 551

Query: 360  QYFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPS 539
             YFLG+EV K  +G+ L+Q KY  DIL+  NM DC P  TP  +   L+ G  +  S+ S
Sbjct: 552  SYFLGIEVTKTASGIYLSQSKYIADILAKHNMADCSPVPTPMATGHYLTKGSGSVISNSS 611

Query: 540  VYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFHP 719
             Y+S +G LQY+TLTRP++AF VNKLSQFL SPT  HW +CKR+LRY+KGT+ + + F+ 
Sbjct: 612  QYKSAVGALQYVTLTRPEIAFSVNKLSQFLASPTAEHWESCKRLLRYLKGTIHFGLHFYH 671

Query: 720  CLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLAS 899
               MQ+  FSD+DWA   DDRKS +G+ ++ G N+VSWSSKKQ+VV+RSST++EYR+LA 
Sbjct: 672  YGTMQINCFSDSDWACDKDDRKSVAGYAVYLGSNLVSWSSKKQAVVSRSSTEAEYRALAQ 731

Query: 900  ATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKVQ 1079
            AT+++ WI+S+  EL I +    ++WCDN SAI+LA NPV+HA+TKH+E+D HFIR+KV 
Sbjct: 732  ATAEVTWIQSLLKELHIHLVTAPIMWCDNQSAIALAHNPVYHAKTKHVELDIHFIRDKVT 791

Query: 1080 NKEVEVRYLSSEDQLADALTKPLPAHRFQQLCSKFTM 1190
             K++ V+++ SEDQ AD LTK L  ++F  L SK  +
Sbjct: 792  AKQITVQFIPSEDQNADVLTKALTFNQFHYLRSKLNV 828


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  394 bits (1012), Expect = e-107
 Identities = 201/400 (50%), Positives = 256/400 (64%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHGDL+E V+M QP GFI+S  PSHVCKL KA+YGLKQAP+AW +KL       
Sbjct: 820  DVQNAFLHGDLEEHVFMQQPPGFINSQYPSHVCKLNKALYGLKQAPRAWYNKLSTSLLGW 879

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                           +  +             TG  S  +S  I  L+  F+L+ LG V 
Sbjct: 880  GFQASRADSSMFIHHSTHDVLILLIYVDDILVTGSSSAQVSSFITRLNSSFALRDLGYVN 939

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPSV 542
            YFLG+EV +      L+Q KY  D+LS   MLD KP  TP    Q LS  D  PFS  ++
Sbjct: 940  YFLGIEVVRSGTMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLGQTLSHLDGEPFSDATL 999

Query: 543  YRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFHPC 722
            YRST+G LQYLTLTRPD++F VNK  QF+ +PT  HW A KR+LRY+KGTLSY I     
Sbjct: 1000 YRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKRILRYLKGTLSYGIQMQQS 1059

Query: 723  LQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLASA 902
              + + G++DADWA   DDR+ST G+ IF GPN+VSWSS KQ VV+RSS +SEYR+LASA
Sbjct: 1060 TSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVSRSSAESEYRALASA 1119

Query: 903  TSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKVQN 1082
            TS+++WI+ V  EL +  S P LLWCDN SA  LA+NPVFHARTKHIE+D HFIR+ V  
Sbjct: 1120 TSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHARTKHIEMDLHFIRDHVLR 1179

Query: 1083 KEVEVRYLSSEDQLADALTKPLPAHRFQQLCSKFTMRTPP 1202
            K++ ++YL S +Q+AD  TK + + +F    +K ++   P
Sbjct: 1180 KQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSVVPSP 1219


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  391 bits (1004), Expect = e-106
 Identities = 190/387 (49%), Positives = 254/387 (65%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DVNNAFL+GDLQE V+M QP GFID   P+ VC+L KA+YGLKQAP+AW +KL       
Sbjct: 1045 DVNNAFLNGDLQEEVFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRAWFEKLHRALLSF 1104

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                         R T ++              G D+  I+ +I  L+  FSLK LGEV 
Sbjct: 1105 GFVSAKSDQSLFLRFTPNHITYVLVYVDDILVIGSDTAAITSLIAQLNSEFSLKDLGEVH 1164

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPSV 542
            YFLG++V    NGL L+Q KY  D+L    M+ CKP  TP  +  KL +GD  P      
Sbjct: 1165 YFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLRVGDGDPVEDLHG 1224

Query: 543  YRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFHPC 722
            YRST+G LQY+T+TRP+L+F VNK+ QF+ +PT  HW   KR+LRY++GTL + +     
Sbjct: 1225 YRSTVGALQYVTITRPELSFSVNKVCQFMQNPTEEHWKVVKRILRYLQGTLQHGLHLKKS 1284

Query: 723  LQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLASA 902
              + L GF DADWA  +DDR+STSG C+F GPN++SW SKKQ +V+RSS + EYRSLA  
Sbjct: 1285 SNLDLIGFCDADWASDLDDRRSTSGHCVFLGPNLISWQSKKQHIVSRSSIEIEYRSLAGL 1344

Query: 903  TSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKVQN 1082
             +++ W++S+  EL +P+++P L+WCDN S + L++NPV HARTKHIE+D +F+REKV  
Sbjct: 1345 VAEITWLRSLLSELQLPLAKPPLVWCDNLSTVLLSANPVLHARTKHIELDLYFVREKVIR 1404

Query: 1083 KEVEVRYLSSEDQLADALTKPLPAHRF 1163
            KEVEVR++ S DQLAD LTK + + +F
Sbjct: 1405 KEVEVRHVPSADQLADVLTKTVSSTQF 1431


>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
          Length = 1002

 Score =  388 bits (997), Expect = e-105
 Identities = 192/401 (47%), Positives = 256/401 (63%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            D NNAFL+G++ ETVY+ QPAGF+ ++ P HVCKL KA+YGLKQAP+ W  KL+      
Sbjct: 600  DFNNAFLNGEITETVYLSQPAGFVSTSHPQHVCKLQKALYGLKQAPRVWFHKLREALHTW 659

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                          +   N             TG++   +  +IQ L   F+LK LG V+
Sbjct: 660  GFISSTSDTSLFIYKHNGNFLLLLVYVDDLLITGNNVPLVQTLIQDLQNRFALKDLGLVK 719

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPSV 542
             FLG E  +   GL L Q KY  D+L    M   KP  TP +++ KL       FS P++
Sbjct: 720  DFLGFEALRTTTGLHLTQSKYTTDLLIKTKMHSAKPVPTPMSAALKLHAASGPAFSDPTL 779

Query: 543  YRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFHPC 722
            YRSTIG LQYLT TRPD+AF VNKLSQ+L  PT  HW ACKRVLRY+KG +   + F P 
Sbjct: 780  YRSTIGALQYLTYTRPDIAFAVNKLSQYLQQPTELHWTACKRVLRYLKGIVHRGLHFTPA 839

Query: 723  LQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLASA 902
              + LQ ++DADWA SIDDR+ST+G+C+F G N+ +WSS+KQ VVARSSTK+EYR+LA A
Sbjct: 840  SSLHLQVYTDADWASSIDDRRSTTGYCVFLGTNLFTWSSRKQPVVARSSTKAEYRALAHA 899

Query: 903  TSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKVQN 1082
            + ++ W++S+F ELGI +    ++WCDN  A +LA+NPVFH+RTKHIE+D  ++RE+V +
Sbjct: 900  SXEVAWLRSLFSELGISLVNTPVIWCDNQGAGALAANPVFHSRTKHIEVDVXYVREQVLD 959

Query: 1083 KEVEVRYLSSEDQLADALTKPLPAHRFQQLCSKFTMRTPPG 1205
            K++ V Y+ S +Q AD  TKPL   RFQ L +K  +    G
Sbjct: 960  KKLVVSYVPSVEQXADLFTKPLSIPRFQYLLTKLNLXVSLG 1000


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  386 bits (992), Expect = e-105
 Identities = 180/390 (46%), Positives = 260/390 (66%), Gaps = 2/390 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP G+   + P++VCKL KA+YGLKQAP+AW  +L       
Sbjct: 415  DVKNAFLHGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSEL 474

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        + + G                       S ++Q L + F+LK LG++ 
Sbjct: 475  GFVPSKADTSLFFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLH 534

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFS--SP 536
            YFLG+EVHK+++GL+L+Q+KYA D+L    M +CKP  TP ++S+KLS+ +         
Sbjct: 535  YFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDS 594

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            + YRS +G LQYLTLTRPD++F +NK+ QFLH+PT  HW A KR+LRY+K T+   + F 
Sbjct: 595  TQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFC 654

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                + + GFSDADWAGS DDR+ST GF +F GPN+VSWS++KQ+ V+RSST++EY++LA
Sbjct: 655  RNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSTEAEYKALA 714

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            +AT++++W++++  ELG+     + LWCDN  A  L++NP+FHARTKHIE+D HF+RE+V
Sbjct: 715  NATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERV 774

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPAHRFQ 1166
              K +E+ Y+S++DQ+AD  TK +P  + +
Sbjct: 775  ARKLLEIAYISTKDQVADGFTKAIPVRQME 804


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  385 bits (989), Expect = e-104
 Identities = 189/398 (47%), Positives = 255/398 (64%), Gaps = 2/398 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP GF D  KP HVCKL KA+YGLKQAP+AW  +L       
Sbjct: 1053 DVQNAFLHGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDL 1112

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   G                    K  + ++Q L   F+LK LGE+ 
Sbjct: 1113 GFKGSKPDTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELH 1172

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFS--SP 536
            YFLG+EV K+QNG++LNQ KYA D+L    M+DCKP +TP + S+KLSL + +       
Sbjct: 1173 YFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDA 1232

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            S YRS +G LQYLTLTRPD+AF VNK+ QFLH+PT  HW A KR+LRY+K      +  H
Sbjct: 1233 SHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIH 1292

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                  + GFSDADWAG +DDR+ST GF IF G N+VSW+++KQ+ V+RSST+SEY+++A
Sbjct: 1293 KSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAIA 1352

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            +AT++++W++++  EL I   + + +WCDN  A  L++NPVFHARTKHIE+D HF+RE+V
Sbjct: 1353 NATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERV 1412

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPAHRFQQLCSKFTM 1190
              K +E+ ++S+ DQ+AD  TKPL     +   S   +
Sbjct: 1413 SQKLLEIDFVSTNDQVADGFTKPLSVRLLENFKSNLNL 1450


>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
          Length = 1434

 Score =  385 bits (988), Expect = e-104
 Identities = 193/400 (48%), Positives = 256/400 (64%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFL+GDL+E V+M QP GF++   P++VCKL KA+YGLKQAP+AW  KL+      
Sbjct: 967  DVENAFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDY 1026

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                           T ++             TG +   +S  I  L   F+L+ LG + 
Sbjct: 1027 GFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPMLVSHFISYLRTKFALRDLGPLS 1086

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPSV 542
            YFLG++  ++ + L LNQ KY  D+L+   M   KP  TP    + LS  D    S PS 
Sbjct: 1087 YFLGIQAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGMSLSDPSE 1146

Query: 543  YRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFHPC 722
            YR T+G LQY+TLTRPD+AF VNK  QF+  P+  HW A KR+LRY+KGT+   + F P 
Sbjct: 1147 YRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPA 1206

Query: 723  LQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLASA 902
              M+LQG+SDADWA   DDR+STSG+C+F G N++SWSS KQ +V++SS +SEYR L S 
Sbjct: 1207 ASMELQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGLVSL 1266

Query: 903  TSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKVQN 1082
            T++L+WI+S+  EL +P S P +LWCDN SA  LA+NPVFH+R+KHIE+D HFIREKV  
Sbjct: 1267 TAELVWIQSLLQELCLPTS-PPILWCDNQSAAHLAANPVFHSRSKHIELDLHFIREKVLR 1325

Query: 1083 KEVEVRYLSSEDQLADALTKPLPAHRFQQLCSKFTMRTPP 1202
            +E+++ Y+ S DQLAD  TK LP  +F  L SK T+  PP
Sbjct: 1326 QELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTVTYPP 1365


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  384 bits (985), Expect = e-104
 Identities = 179/390 (45%), Positives = 259/390 (66%), Gaps = 2/390 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP G+   + P++VCKL KA+YGLKQAP+AW  +L       
Sbjct: 993  DVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSEL 1052

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        + + G                       S ++Q L + F+LK LG++ 
Sbjct: 1053 GFVPSKADTSLFFYKKGQVSIFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLH 1112

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFS--SP 536
            YFLG+EVHK+++GL+L+Q+KYA D+L    M +CKP  TP ++S+KLS+ +         
Sbjct: 1113 YFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDS 1172

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            + YRS +G LQYLTLTRPD++F +NK+ QFLH+PT  HW A KR+LRY+K T+   + F 
Sbjct: 1173 TQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFC 1232

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                + + GFSDADWAGS DDR+ST GF +F GPN+VSWS++KQ+ V+RSS ++EY++LA
Sbjct: 1233 RNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSSIEAEYKALA 1292

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            +AT++++W++++  ELG+     + LWCDN  A  L++NP+FHARTKHIE+D HF+RE+V
Sbjct: 1293 NATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDFHFVRERV 1352

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPAHRFQ 1166
              K +E+ Y+S++DQ+AD  TK +P  + +
Sbjct: 1353 ARKLLEIAYISTKDQVADGFTKAIPVRQME 1382


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  382 bits (982), Expect = e-103
 Identities = 186/391 (47%), Positives = 258/391 (65%), Gaps = 2/391 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP GF +  +P+++CKL KA+YGLKQAP+AW  +L       
Sbjct: 534  DVQNAFLHGYLEEEVYMRQPPGFENKGQPNYLCKLDKALYGLKQAPRAWYSRLSTKLQEL 593

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   G                   ++ ++ +++ L++ F+LK LG++ 
Sbjct: 594  GFISSKADTSLFFYNKGGCTIFILVYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLH 653

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSL--GDSAPFSSP 536
            YFLG+EV K+  GL+L+Q  YA DIL  A M  CKP  TP ++++KLS+  GD    +  
Sbjct: 654  YFLGIEVKKVSQGLVLSQAWYASDILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDA 713

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            S YRS +G LQYLTLTR DL+F+VNK+ QFLHSPT  HW A KR+LRYIKGT+ + + F 
Sbjct: 714  SHYRSIVGALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFG 773

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                M +  FSDADWAG  DDR+ST GF +F GPN++SWS++KQ+ V+RSST++EY++LA
Sbjct: 774  KSDSMLISAFSDADWAGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRSSTEAEYKALA 833

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            +AT+++ W++ +  EL I     + LWCDN  A  L++NPVFHARTKHIEID HF+RE+V
Sbjct: 834  NATTEVTWVRKILDELRIARPSVAQLWCDNLGATYLSANPVFHARTKHIEIDYHFVREQV 893

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPAHRFQQ 1169
              K ++++++S+ DQLAD  TK LPA    Q
Sbjct: 894  AKKLLDIQFISTTDQLADGFTKSLPAPSLAQ 924


>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
          Length = 773

 Score =  382 bits (980), Expect = e-103
 Identities = 191/400 (47%), Positives = 254/400 (63%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV N FL+GDL+E V+M QP GF++   P++VCKL KA+YGLKQAP+AW  KL+      
Sbjct: 314  DVENGFLNGDLEEEVFMTQPQGFVNPTYPTYVCKLHKALYGLKQAPRAWFQKLRIALLDY 373

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                           T ++             TG +   +S  I  L   F+L+ LG + 
Sbjct: 374  GFQSSRADTSLFIFHTATDILILLVYVDDILVTGSNPTLVSHFISYLRTKFALRDLGPLS 433

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPSV 542
            YFLG++  ++ + L LNQ KY  D+L+   M   KP  TP    + LS  D    S PS 
Sbjct: 434  YFLGIQAQQLGSVLHLNQHKYIADLLNRTQMETSKPAPTPGRLGRTLSQSDGVSLSDPSE 493

Query: 543  YRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFHPC 722
            YR T+G LQY+TLTRPD+AF VNK  QF+  P+  HW A KR+LRY+KGT+   + F P 
Sbjct: 494  YRRTVGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPA 553

Query: 723  LQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLASA 902
              M+ QG+SDADWA   DDR+STSG+C+F G N++SWSS KQ +V++SS +SEYR L S 
Sbjct: 554  ASMEXQGYSDADWASCPDDRRSTSGYCVFLGSNLISWSSSKQRLVSKSSAESEYRGLVSL 613

Query: 903  TSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKVQN 1082
            T++L+WI+S+  EL +P S P +LWCDN SA  LA+NPVFH+R+KHIE+D HFIREKV  
Sbjct: 614  TAELVWIQSLLQELCLPTS-PPILWCDNQSAAHLAANPVFHSRSKHIELDLHFIREKVLR 672

Query: 1083 KEVEVRYLSSEDQLADALTKPLPAHRFQQLCSKFTMRTPP 1202
            +E+++ Y+ S DQLAD  TK LP  +F  L SK T+  PP
Sbjct: 673  QELQICYVPSGDQLADIFTKHLPITQFCNLRSKLTVTYPP 712


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  379 bits (974), Expect = e-102
 Identities = 183/386 (47%), Positives = 253/386 (65%), Gaps = 2/386 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP GF  S+KP +VCKL KA+YGLKQAP+AW  +L       
Sbjct: 1045 DVQNAFLHGFLEEEVYMQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVEL 1104

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   G                    K  + +++ L++ F+LK LG++ 
Sbjct: 1105 GFEASKADTSLFFLNKGGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLH 1164

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPSV 542
            YFLG+EV K+ NG++L Q+KYA D+L   NM +CKP  TP + S+KL+L + +P      
Sbjct: 1165 YFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDA 1224

Query: 543  --YRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
              YRS +G LQYLTLTRPD+A+ VNK+ QFLH+PT +HW A KR+LRY+    S  +  H
Sbjct: 1225 IQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHIH 1284

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                  + G+SDADWAGSIDDRKST GF +F G N+VSWS++KQ  V+RSST++EY+++A
Sbjct: 1285 KSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVA 1344

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            + T++L+W++++  ELGI   + + +WCDN  A  L++NPVFHARTKHIE+D HF+RE+V
Sbjct: 1345 NTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERV 1404

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPA 1154
              K +E+ ++ S DQ+AD  TK L A
Sbjct: 1405 SQKLLEIDFVPSGDQVADGFTKALSA 1430


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  379 bits (974), Expect = e-102
 Identities = 182/384 (47%), Positives = 251/384 (65%), Gaps = 2/384 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP G+ DS K ++VCKL KA+YGLKQAP+AW  +L       
Sbjct: 913  DVQNAFLHGVLEEEVYMQQPPGYEDSTKLNYVCKLDKALYGLKQAPRAWYSRLSNKLLSL 972

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   GS                   K    ++  L++ F+LK LG++ 
Sbjct: 973  GFQASKADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATEALLSDLNKEFALKDLGDLN 1032

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPSV 542
            YFLG+EV+K+++G++L Q KYA D+L    M DCKP  TP ++S+KLS+ + +P     +
Sbjct: 1033 YFLGIEVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPLSTSEKLSIHEGSPLGEKDI 1092

Query: 543  --YRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
              YRS +G LQYLTLTRPD+AF VNK+ QFLH+PT  HW A KR+LRYIK   +  +  H
Sbjct: 1093 TQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIH 1152

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                  +  FSDADWAGS+DDRKST GF +F G N+VSWS++KQ  V+RSST+SEY++LA
Sbjct: 1153 RSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTESEYKALA 1212

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            +AT++L+W++ +  E+ I     + LWCDN  A  L++NP+FHARTKHIE+D HF+R++V
Sbjct: 1213 NATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPIFHARTKHIEVDYHFVRDRV 1272

Query: 1077 QNKEVEVRYLSSEDQLADALTKPL 1148
              K +++ Y+ + DQ+AD  TKPL
Sbjct: 1273 AKKLLDIEYVPTGDQVADGFTKPL 1296


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  378 bits (971), Expect = e-102
 Identities = 180/384 (46%), Positives = 254/384 (66%), Gaps = 2/384 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP GF   +KP++VCKL KA+YGLKQAP+AW  +L       
Sbjct: 1036 DVQNAFLHGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVEL 1095

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   G                    K  + +++ L++ F+LK LG++ 
Sbjct: 1096 GFEASKADTSLFFLNKGGIIMFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLH 1155

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPF--SSP 536
            YFLG+EV K+ NG++L Q+KYA D+L   NM +CKP  TP + S+KL+L + +P   +  
Sbjct: 1156 YFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDA 1215

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            + YRS +G LQYLTLTRPD+A+ VNK+ QFLH+PT +HW A KR+LRY+    S  +  H
Sbjct: 1216 TQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGLNIH 1275

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                  + G+SDADWAGS+DDRKST GF +F G N+VSWS++KQ  V+RSST++EY+++A
Sbjct: 1276 KSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVA 1335

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            + T++L+W++++  ELGI   + + +WCDN  A  L++NPVFHARTKHIE+D HF+RE+V
Sbjct: 1336 NTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERV 1395

Query: 1077 QNKEVEVRYLSSEDQLADALTKPL 1148
              K +E+ ++ S DQ+AD  TK L
Sbjct: 1396 SQKLLEIDFVPSGDQVADGFTKAL 1419


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  376 bits (966), Expect = e-102
 Identities = 183/390 (46%), Positives = 251/390 (64%), Gaps = 2/390 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP G+ D   P +VCKL KA+YGLKQAP+AW  KL       
Sbjct: 856  DVQNAFLHGILEEEVYMKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHL 915

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   G                      +  +++ L + F+LK LG++ 
Sbjct: 916  GFQGSKADTSLFFYNKGGLIIFVLVYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDLH 975

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSL--GDSAPFSSP 536
            YFLG+EV+K  +G++L Q+KY  D+L    M DCKP  TP ++S+KL+L  GD    +  
Sbjct: 976  YFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDA 1035

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            S YRS +G LQYLTLTRPD+ F VNK+ QFLH+PT+ HW A KR+LRY+K      +   
Sbjct: 1036 SNYRSVVGALQYLTLTRPDIYFPVNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLKIS 1095

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                M + G+SDADWAG+IDDR+ST GF +F G N+VSW++KKQ+ V RSST+SEY++LA
Sbjct: 1096 KSKSMLVSGYSDADWAGNIDDRRSTGGFAVFLGDNLVSWNAKKQATVPRSSTESEYKALA 1155

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            +AT++++WI+++  EL +P    + LWCDN  A  L+SNPVFHARTKHIE+D HF+RE++
Sbjct: 1156 NATAEIMWIQTLLEELSVPSPPMARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERM 1215

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPAHRFQ 1166
            Q K +EV ++ + DQ+AD  TK L A + +
Sbjct: 1216 QRKLLEVEFIPTGDQVADGFTKALSARQLE 1245


>emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]
          Length = 478

 Score =  374 bits (959), Expect = e-101
 Identities = 191/403 (47%), Positives = 251/403 (62%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DVNNAFL G L E V+M QP GFID   P HVCKL KAIYGLKQAP+AW  +L       
Sbjct: 66   DVNNAFLQGTLTEDVFMSQPPGFIDRDHPHHVCKLRKAIYGLKQAPRAWYHELCQFLLQF 125

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                                            TG++ +     IQ L + FSLK LG + 
Sbjct: 126  GFINSIADTSLFIFNNHDTILYLLVYVDDIIITGNNVEAAQTFIQQLSQRFSLKDLGPLT 185

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPSV 542
            YFLG+EV    NGL L+Q+KY  D+L+  +M + KP  TP  +S  L+L    P S P+ 
Sbjct: 186  YFLGVEVTSHTNGLFLSQRKYIADLLNRTHMTEAKPAPTPLATSPILTLQSGTPLSDPTE 245

Query: 543  YRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFHPC 722
            YR+ +G LQYL+LTRPD+A+ VNKLSQF+H PT +HW A KR+LRY+ GTL + IT    
Sbjct: 246  YRTVVGSLQYLSLTRPDIAYTVNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHDITLRRT 305

Query: 723  LQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLASA 902
              + L  FSD+DWAG+ DD  STS + I+ G N +SWSSKKQ  VARSST++EYRS+AS 
Sbjct: 306  SPLALHAFSDSDWAGNKDDFTSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVAST 365

Query: 903  TSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKVQN 1082
             +++ WI S+  ELG+ + +  +++CDN  A +L SNPVFH+R KH+ +D HFIRE+VQN
Sbjct: 366  AAEIRWICSLLTELGVTLPQQPVIYCDNVGATNLCSNPVFHSRMKHVALDYHFIREQVQN 425

Query: 1083 KEVEVRYLSSEDQLADALTKPLPAHRFQQLCSKFTMRTPPGFV 1211
              + V ++S+ DQLADALTKPL   +F  L +K  +   P  +
Sbjct: 426  GLLRVSHISASDQLADALTKPLARPQFDSLKAKIGLAPRPSIL 468


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  374 bits (959), Expect = e-101
 Identities = 178/390 (45%), Positives = 252/390 (64%), Gaps = 2/390 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP G+ DS+ P +VCKL KA+YGLKQAP+AW  +L       
Sbjct: 847  DVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDM 906

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   G               T    + +  +++ L + F+LK LG++ 
Sbjct: 907  GFQGSKADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEAVPALLRDLQKEFALKDLGDLH 966

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPF--SSP 536
            YFLG+EV K+  G++L Q KY  D+L   NM DCKP  TP ++S+KLS+ +  P   +  
Sbjct: 967  YFLGIEVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDA 1026

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            + YRS +G LQYLTLTRPD+AF VNK+ QFLH+PT +HW A KR+LRY+K      +   
Sbjct: 1027 THYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLS 1086

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                M +  +SDADWAGS+DDR+ST GF +F G N+VSWS++KQ+ V+RSST+SEY++LA
Sbjct: 1087 KSRSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALA 1146

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            +AT++++W++++  EL +     + LWCDN  A  L++NPVFHARTKHIE+D HF+RE+V
Sbjct: 1147 NATAEIMWVQTLLAELQVESPSMAKLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERV 1206

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPAHRFQ 1166
              K +E+ ++ + DQ+AD  TK L   + +
Sbjct: 1207 SRKLLEIDFVPTGDQVADGFTKALSVRQLE 1236


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  372 bits (954), Expect = e-100
 Identities = 181/390 (46%), Positives = 251/390 (64%), Gaps = 2/390 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E VYM QP G+ D + P +VCKL KA+YGLKQAP+AW  +L       
Sbjct: 1047 DVQNAFLHGFLEEEVYMKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDL 1106

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   G               T    + +S ++Q L + F+LK LG++ 
Sbjct: 1107 GFQGSKGDTSLFFYNKGGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGDLH 1166

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSL--GDSAPFSSP 536
            YFLG+EV+K+ + ++L Q KYA D+L   NM DCKP  TP ++S+KLS   GD       
Sbjct: 1167 YFLGIEVNKVTDEIILTQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDA 1226

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            + YRS +G LQYLTLTRPD+AF VNK+ QFLH+PT  HW A KR+LRY+K      +   
Sbjct: 1227 TNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTKLGLKLC 1286

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                M +  +SDADWAGS+DDR+ST GF +F G N+VSW ++KQ+ V+RSST+SEY++LA
Sbjct: 1287 KSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWCARKQATVSRSSTESEYKALA 1346

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            +AT++++W++++  EL +     + LWCDN  A  L+SNPVFHARTKHIE+D HF+RE+V
Sbjct: 1347 NATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERV 1406

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPAHRFQ 1166
              K +E+ ++ + DQ+AD  TK LP  + +
Sbjct: 1407 SQKLLEIDFVPTGDQVADGFTKALPVRQLE 1436


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  370 bits (950), Expect = e-100
 Identities = 180/386 (46%), Positives = 252/386 (65%), Gaps = 2/386 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV N FLHG L+E VYM QP GF  S+KP +VCKL KA+YGLKQAP+AW  +L       
Sbjct: 1048 DVQNDFLHGFLEEEVYMQQPPGFESSSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTEL 1107

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   G                    K  + +++ L++ F+LK LG++ 
Sbjct: 1108 GFEASKADTSLFFLNKGGIIMFVLVYVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLH 1167

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPF--SSP 536
            YFLG+EV K+ NG++L Q+KYA D+L   NM +CKP  TP + S+KL+L + +P   +  
Sbjct: 1168 YFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDA 1227

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            + YRS +G LQYLTLTRPD+A+ VNK+ QFLH+PT +HW A KR+LRY+    S  +  H
Sbjct: 1228 TQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIAVKRILRYLNQCTSLGLHVH 1287

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                  + G+SDAD AGSIDDRKST GF +F G N+VSWS++KQ  V+RSST++EY+++A
Sbjct: 1288 KSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVA 1347

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            + T++L+W+++V  ELGI   + + +WCDN  A  L++NPVFHA+TKHI +D HF+RE+V
Sbjct: 1348 NTTAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPVFHAKTKHIHVDYHFVRERV 1407

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPA 1154
              K +E+ ++ S DQ+AD  TK L A
Sbjct: 1408 SQKLLEIDFVPSGDQVADGFTKALSA 1433


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  370 bits (949), Expect = e-100
 Identities = 177/390 (45%), Positives = 252/390 (64%), Gaps = 2/390 (0%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            DV NAFLHG L+E V+M QP G+    K  +VCKL KA+YGLKQAP+AW  +L       
Sbjct: 1032 DVQNAFLHGVLEEDVFMRQPPGY--EQKDGYVCKLDKALYGLKQAPRAWYSRLSTKLHEL 1089

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                        +   G                       + +++ L++ F+LK LG + 
Sbjct: 1090 GFKSSKSDTSLFFYSKGDVAMFMLVYVDDIIVASSSIDATNALLKNLNQEFALKDLGRLH 1149

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFS--SP 536
            YFLG+EV ++ NG++L Q+KYA+D+L   NM DCK  +TP + S+KLS  +  PF     
Sbjct: 1150 YFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCKAVNTPLSISEKLSAHEGNPFGPEDS 1209

Query: 537  SVYRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFH 716
            + YRS +G LQYLTLTRPDL+F VNK+ Q+LH+PT  HW A KR+LRY+K T+   +   
Sbjct: 1210 TRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPTTKHWAAAKRILRYLKHTVKLGLKIS 1269

Query: 717  PCLQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLA 896
                + +  FSDADWAG +DDR ST GF +F GPN+VSWS++KQ+ V+RSST++EY++LA
Sbjct: 1270 KSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPNLVSWSARKQATVSRSSTEAEYKALA 1329

Query: 897  SATSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKV 1076
            + T++++WI+++ HELGI   + + +WCDN  A  + +NPVFHARTKHIE+D HF+RE+V
Sbjct: 1330 NVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKYMTANPVFHARTKHIEVDYHFVRERV 1389

Query: 1077 QNKEVEVRYLSSEDQLADALTKPLPAHRFQ 1166
              K ++V Y+S++DQ+AD  TK L   + +
Sbjct: 1390 ARKFLQVEYISTKDQVADGFTKTLSVRQLE 1419


>emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]
          Length = 1442

 Score =  369 bits (946), Expect = 2e-99
 Identities = 189/393 (48%), Positives = 247/393 (62%)
 Frame = +3

Query: 3    DVNNAFLHGDLQETVYMHQPAGFIDSAKPSHVCKLVKAIYGLKQAPKAWTDKLKCXXXXX 182
            D+NNAFLHG L ETVYM QP GF D++KP HVC+L KAIYGL+QAP+AW   L+      
Sbjct: 974  DINNAFLHGTLTETVYMMQPPGFKDTSKPDHVCRLRKAIYGLRQAPRAWYTTLRTALFQL 1033

Query: 183  XXXXXXXXXXXXYRRTGSNXXXXXXXXXXXXXTGDDSKDISLVIQALDRHFSLKHLGEVQ 362
                            G               TG+D + +  +IQ L  +FSLK +G   
Sbjct: 1034 GFKNSKADSSLFIYTHGPIICYFLVYVDDLVITGNDIQFVDHIIQKLGENFSLKDMGNHS 1093

Query: 363  YFLGLEVHKIQNGLLLNQKKYAVDILSAANMLDCKPCDTPYNSSQKLSLGDSAPFSSPSV 542
            +FLG+EV   + GL L+Q +Y  D+LS  NML  K   TP +++  L L D       + 
Sbjct: 1094 FFLGVEVIPTRAGLFLSQHQYIRDLLSTTNMLGAKDVSTPLSTTASLKLFDGTAPVDSTD 1153

Query: 543  YRSTIGVLQYLTLTRPDLAFVVNKLSQFLHSPTVNHWGACKRVLRYIKGTLSYSITFHPC 722
            +R  IG LQYL+LTRPD++F VNKLSQF+H PT  HW A KR+LRY+K T+ + I     
Sbjct: 1154 FRRVIGSLQYLSLTRPDISFAVNKLSQFMHKPTTAHWTATKRLLRYLKQTIFHGIQLTRN 1213

Query: 723  LQMQLQGFSDADWAGSIDDRKSTSGFCIFFGPNIVSWSSKKQSVVARSSTKSEYRSLASA 902
                L  FSDADW G++DDR STS +  F G N +SWSSKKQ  +ARSST++EYR+LA+A
Sbjct: 1214 TTSVLTTFSDADWVGNVDDRTSTSAYISFLGTNPISWSSKKQRAIARSSTEAEYRALANA 1273

Query: 903  TSDLLWIKSVFHELGIPISEPSLLWCDNASAISLASNPVFHARTKHIEIDAHFIREKVQN 1082
            TS+ +W+ S+ HELG P+  P LL CDN  A  L+ NPV H+R K+I+ID HF+RE VQN
Sbjct: 1274 TSETVWLNSLHHELGFPLKVPPLLLCDNLGATHLSFNPVNHSRMKYIQIDLHFVRELVQN 1333

Query: 1083 KEVEVRYLSSEDQLADALTKPLPAHRFQQLCSK 1181
              + VR++ ++DQLAD LTKPL   R + LC+K
Sbjct: 1334 GTLHVRHVHTQDQLADLLTKPLSRQRTELLCTK 1366