BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00014468
         (390 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Mor...   131   8e-29
ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III s...   121   1e-25
ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III s...   120   2e-25
ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citr...   119   5e-25
emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]   118   9e-25
ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III s...   117   2e-24
ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Popu...   115   5e-24
gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [The...   115   6e-24
gb|AFK37258.1| unknown [Lotus japonicus]                              113   3e-23
gb|AFK40316.1| unknown [Lotus japonicus]                              108   1e-21
gb|ESW35387.1| hypothetical protein PHAVU_001G230900g [Phaseolus...   103   2e-20
ref|XP_003552972.1| PREDICTED: DNA-directed RNA polymerase III s...   101   9e-20
dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]        100   2e-19
ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidop...   100   2e-19
ref|XP_006590267.1| PREDICTED: uncharacterized protein LOC100526...   100   3e-19
ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587...   100   3e-19
ref|NP_001238744.1| uncharacterized protein LOC100526847 [Glycin...   100   3e-19
gb|EMJ28495.1| hypothetical protein PRUPE_ppa017050mg [Prunus pe...    99   6e-19
ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258...    99   8e-19
ref|XP_002525535.1| conserved hypothetical protein [Ricinus comm...    99   8e-19

>gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Morus notabilis]
          Length = 163

 Score =  131 bits (330), Expect = 8e-29
 Identities = 56/94 (59%), Positives = 83/94 (88%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           +S+GA KDPT V+A V+PSE+KV+DYL +TAAC+QTKE V++F+++CKKYDLAKAE+LN+
Sbjct: 21  KSKGASKDPTRVLADVAPSEYKVYDYLVETAACDQTKENVNEFLEKCKKYDLAKAEVLNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRMEEKIDEFVETIA 284
           +N+R S+AVE+Y I+E+C+ R+ + +DE V+T+A
Sbjct: 81  INIRASTAVEIYLIVEDCEKRLGDDVDELVKTVA 114


>ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9 [Vitis
           vinifera] gi|296087853|emb|CBI35109.3| unnamed protein
           product [Vitis vinifera]
          Length = 156

 Score =  121 bits (303), Expect = 1e-25
 Identities = 55/93 (59%), Positives = 77/93 (82%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           RSRGA KDPT VIA ++ SEFKV+DYL ++AACNQT+E +++ +++CKKYDLAKAEILN+
Sbjct: 21  RSRGAAKDPTRVIAPIAASEFKVYDYLVESAACNQTRESINELLEKCKKYDLAKAEILNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRMEEKIDEFVETI 281
           +N+RP+S VE+  IIEE + RM E I++ +E +
Sbjct: 81  INIRPASPVEIDPIIEESEKRMGEGIEDLIEMV 113


>ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like
           [Cucumis sativus] gi|449523065|ref|XP_004168545.1|
           PREDICTED: DNA-directed RNA polymerase III subunit
           rpc9-like [Cucumis sativus]
          Length = 160

 Score =  120 bits (300), Expect = 2e-25
 Identities = 55/93 (59%), Positives = 74/93 (79%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           RS+GA KDPT V+A V PSE+KVFDYL QT+ACNQT+E +  F ++ K+YDLAKAEILN+
Sbjct: 21  RSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAIINFAEKSKEYDLAKAEILNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRMEEKIDEFVETI 281
           +N+RP++ VE++ +IE CD+RM E   E +E I
Sbjct: 81  INLRPTTPVELFPVIENCDARMGEGATERMEEI 113


>ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citrus clementina]
           gi|567853814|ref|XP_006420027.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
           gi|557521899|gb|ESR33266.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
           gi|557521900|gb|ESR33267.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
          Length = 163

 Score =  119 bits (297), Expect = 5e-25
 Identities = 55/94 (58%), Positives = 79/94 (84%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           RS+GA KDPT V+  V+PSEFKV+DYL ++AACNQT+ I+++F+++ KK+ LAKAEILN+
Sbjct: 21  RSKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSR-MEEKIDEFVETI 281
           +N+RPSS VEV +IIE+CD+R  EE++ E V+ +
Sbjct: 81  INIRPSSLVEVDSIIEQCDTRFQEEELQELVDLV 114


>emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]
          Length = 388

 Score =  118 bits (295), Expect = 9e-25
 Identities = 54/93 (58%), Positives = 76/93 (81%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           RSRGA KD T VIA ++ SEFKV+DYL ++AACNQT+E +++ +++CKKYDLAKAEILN+
Sbjct: 42  RSRGAAKDXTRVIAPIAASEFKVYDYLVESAACNQTRESINELLEKCKKYDLAKAEILNI 101

Query: 183 VNMRPSSAVEVYTIIEECDSRMEEKIDEFVETI 281
           +N+RP+S VE+  IIEE + RM E I++ +E +
Sbjct: 102 INIRPASPVEIDPIIEESEKRMGEGIEDLIEMV 134


>ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
           isoform X1 [Citrus sinensis]
           gi|568872598|ref|XP_006489454.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC9-like isoform X2 [Citrus
           sinensis]
          Length = 165

 Score =  117 bits (292), Expect = 2e-24
 Identities = 54/94 (57%), Positives = 78/94 (82%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           R +GA KDPT V+  V+PSEFKV+DYL ++AACNQT+ I+++F+++ KK+ LAKAEILN+
Sbjct: 21  RCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSR-MEEKIDEFVETI 281
           +N+RPSS VEV +IIE+CD+R  EE++ E V+ +
Sbjct: 81  INIRPSSLVEVDSIIEQCDTRFQEEELQELVDLV 114


>ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Populus trichocarpa]
           gi|222855719|gb|EEE93266.1| hypothetical protein
           POPTR_0005s06860g [Populus trichocarpa]
          Length = 159

 Score =  115 bits (289), Expect = 5e-24
 Identities = 55/94 (58%), Positives = 75/94 (79%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           RSRGA +D + V+A V+ SE+KV+DYL +T ACN T+E +++F++ CKKYDLAKAE+LN+
Sbjct: 21  RSRGASRDVSRVLAPVAASEYKVYDYLVETPACNLTREKINEFLERCKKYDLAKAELLNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRMEEK-IDEFVETI 281
           +N+RPS  VE+YTIIEE DSR E   I+E VE +
Sbjct: 81  INIRPSQTVEIYTIIEEMDSRFEMPIIEELVELV 114


>gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [Theobroma cacao]
          Length = 245

 Score =  115 bits (288), Expect = 6e-24
 Identities = 51/93 (54%), Positives = 73/93 (78%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           RSRGA KDPT VI  ++PSEFKV+DYL ++AACNQTKE ++ F++ CK Y LAKAE+LN+
Sbjct: 96  RSRGASKDPTRVIVPIAPSEFKVYDYLVESAACNQTKEHINDFLERCKNYKLAKAEVLNI 155

Query: 183 VNMRPSSAVEVYTIIEECDSRMEEKIDEFVETI 281
           +N+RPS+ VE+  IIE+ + R  ++++E V  +
Sbjct: 156 INLRPSALVEIDPIIEQSEKRFGKQLEELVNLV 188


>gb|AFK37258.1| unknown [Lotus japonicus]
          Length = 162

 Score =  113 bits (282), Expect = 3e-23
 Identities = 53/94 (56%), Positives = 76/94 (80%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           R +GA KDPT VIA V+ SE+KV+DYL  TAA NQT+E +++F+   KK+DLAKAE+LN+
Sbjct: 21  RGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINEFMASVKKHDLAKAEVLNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRM-EEKIDEFVETI 281
           +N+RP++AVE++ IIEEC+SR  +E++ E VE +
Sbjct: 81  INIRPAAAVEMFPIIEECESRFPDEEVTEIVELV 114


>gb|AFK40316.1| unknown [Lotus japonicus]
          Length = 162

 Score =  108 bits (269), Expect = 1e-21
 Identities = 51/92 (55%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           R +GA KDPT VIA V+ SE+KV+DYL  TAA NQT+E +++F+   KK+DLAKAE+LN+
Sbjct: 21  RGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINEFMASVKKHDLAKAEVLNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRM-EEKIDEFVE 275
           +N+ P++AVE++ IIEEC+ R  +E++ E VE
Sbjct: 81  INITPAAAVEMFPIIEECEPRFPDEEVTEIVE 112


>gb|ESW35387.1| hypothetical protein PHAVU_001G230900g [Phaseolus vulgaris]
          Length = 154

 Score =  103 bits (258), Expect = 2e-20
 Identities = 49/94 (52%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           R++GA KDPT VIA V  SE+KV+DYL  TAA +QT+E +++F+   K++DLAKAE+LN+
Sbjct: 21  RAKGASKDPTRVIAKVEQSEYKVYDYLVDTAASDQTRESINEFLTCIKRHDLAKAEVLNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRM-EEKIDEFVETI 281
           +N RP+S VE++ IIE C+ R  +E++ E VE +
Sbjct: 81  LNTRPTSEVEIFPIIESCEGRFPDEEVTEIVELV 114


>ref|XP_003552972.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
           [Glycine max]
          Length = 161

 Score =  101 bits (252), Expect = 9e-20
 Identities = 49/94 (52%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           R++GA KDPT VIA V+ SE+KV+DYL  TAA  QT+E +++F+   K++DLAKAE+LN+
Sbjct: 21  RAKGASKDPTRVIAKVAQSEYKVYDYLVDTAASVQTRESINEFLTSVKQHDLAKAEVLNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRM-EEKIDEFVETI 281
           +N+ P++ VE+Y IIE+CD R  +E + E VE +
Sbjct: 81  LNIGPAAEVELYPIIEDCDERFGDEGVLEIVELV 114


>dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]
          Length = 166

 Score =  100 bits (249), Expect = 2e-19
 Identities = 48/80 (60%), Positives = 62/80 (77%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVV 185
           SRGA KD T VIA ++ SE+KV+DYL +TAA  QT+E ++KF D+CK + LAKAEILN++
Sbjct: 49  SRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNII 108

Query: 186 NMRPSSAVEVYTIIEECDSR 245
           N+RPSS VE+  IIE  D R
Sbjct: 109 NLRPSSIVELLPIIENLDDR 128


>ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
           gi|334188590|ref|NP_001190602.1| RNA polymerase II,
           Rpb4, core protein [Arabidopsis thaliana]
           gi|32815911|gb|AAP88340.1| At5g62950 [Arabidopsis
           thaliana] gi|110743157|dbj|BAE99470.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332010294|gb|AED97677.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
           gi|332010296|gb|AED97679.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
          Length = 139

 Score =  100 bits (249), Expect = 2e-19
 Identities = 48/80 (60%), Positives = 62/80 (77%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVV 185
           SRGA KD T VIA ++ SE+KV+DYL +TAA  QT+E ++KF D+CK + LAKAEILN++
Sbjct: 22  SRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNII 81

Query: 186 NMRPSSAVEVYTIIEECDSR 245
           N+RPSS VE+  IIE  D R
Sbjct: 82  NLRPSSIVELLPIIENLDDR 101


>ref|XP_006590267.1| PREDICTED: uncharacterized protein LOC100526847 isoform X1 [Glycine
           max]
          Length = 161

 Score =  100 bits (248), Expect = 3e-19
 Identities = 49/94 (52%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           R++GA KDPT VIA VS SE+KV+DYL  TAA  QT+E +++F+   K++DLAKAE+LN+
Sbjct: 21  RAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESINEFLRSVKQHDLAKAEVLNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRM-EEKIDEFVETI 281
           +N+ P++ VE+Y I+EE D R  +E + E VE +
Sbjct: 81  LNIGPAAEVELYPILEESDERFGDEGVTEIVELV 114


>ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587541 isoform X1 [Solanum
           tuberosum] gi|565389533|ref|XP_006360507.1| PREDICTED:
           uncharacterized protein LOC102587541 isoform X2 [Solanum
           tuberosum]
          Length = 173

 Score =  100 bits (248), Expect = 3e-19
 Identities = 50/112 (44%), Positives = 73/112 (65%), Gaps = 19/112 (16%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAK------ 164
           RSRGAG+DPT VI  ++PSEFKV+DYLEQTAACNQT++++ + + +CK   L K      
Sbjct: 21  RSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVIGELMGKCKSIKLEKCKCIKP 80

Query: 165 ----------AEILNVVNMRPSSAVEVYTIIEECDSRME---EKIDEFVETI 281
                      E +N++N+RPSS VE+Y I+ + D+ +E   E ++E VE +
Sbjct: 81  EKCKCIKLKHVETVNIINIRPSSLVELYPILRKYDAHLEEVAETMEELVENV 132


>ref|NP_001238744.1| uncharacterized protein LOC100526847 [Glycine max]
           gi|255630978|gb|ACU15853.1| unknown [Glycine max]
          Length = 161

 Score =  100 bits (248), Expect = 3e-19
 Identities = 49/94 (52%), Positives = 71/94 (75%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           R++GA KDPT VIA VS SE+KV+DYL  TAA  QT+E +++F+   K++DLAKAE+LN+
Sbjct: 21  RAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESINEFLRSVKQHDLAKAEVLNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRM-EEKIDEFVETI 281
           +N+ P++ VE+Y I+EE D R  +E + E VE +
Sbjct: 81  LNIGPAAEVELYPILEESDERFGDEGVTEIVELV 114


>gb|EMJ28495.1| hypothetical protein PRUPE_ppa017050mg [Prunus persica]
          Length = 160

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 46/92 (50%), Positives = 66/92 (71%)
 Frame = +3

Query: 6   SRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVV 185
           SRGA +D   V + V+PSE KV+ YL  T A  QT E +++F ++CKKYDLA+AE+LN++
Sbjct: 21  SRGASEDSARVFSDVTPSENKVYGYLFGTPARGQTTENINEFKEKCKKYDLAEAEVLNII 80

Query: 186 NMRPSSAVEVYTIIEECDSRMEEKIDEFVETI 281
           N RPSS V +Y +IE CD R+ + ++E VE +
Sbjct: 81  NTRPSSIVGIYPLIENCDLRLGDTVEELVELV 112


>ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258513 [Solanum
           lycopersicum]
          Length = 168

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 50/112 (44%), Positives = 73/112 (65%), Gaps = 19/112 (16%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKA----- 167
           RSRGAG+DPT VI  ++PSEFKV+DYLEQTAACNQT++++ + + +CK   L K      
Sbjct: 21  RSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVIGELMGKCKCIKLEKCECIKP 80

Query: 168 -----------EILNVVNMRPSSAVEVYTIIEECDSRM---EEKIDEFVETI 281
                      EI+N++N+RPSS VE+Y I+ + D+ +    E ++E VE +
Sbjct: 81  KQCECIKLEGDEIVNIINIRPSSLVELYPILRKYDALLGEAAETVEELVENV 132


>ref|XP_002525535.1| conserved hypothetical protein [Ricinus communis]
           gi|223535214|gb|EEF36893.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 138

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 45/93 (48%), Positives = 70/93 (75%)
 Frame = +3

Query: 3   RSRGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNV 182
           ++RGAGKD + VIA V+PSE+KV+DYL +T AC QT+E +++F+++CK Y LAKAEILN+
Sbjct: 21  KARGAGKDSSRVIAPVAPSEYKVYDYLMETPACRQTREQINEFMEKCKAYKLAKAEILNI 80

Query: 183 VNMRPSSAVEVYTIIEECDSRMEEKIDEFVETI 281
           +N+ P   VE+  IIE+ + R  + ++E  + +
Sbjct: 81  INIVPRELVELDPIIEKSEVRFGDLLEEVKDLV 113