BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00014268
         (1371 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...   543   e-152
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   539   e-151
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   532   e-148
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   511   e-142
ref|XP_002301949.1| pseudouridine synthase family protein [Popul...   503   e-140
gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [...   502   e-139
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...   501   e-139
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   497   e-138
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...   497   e-138
gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus...   493   e-136
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr...   490   e-136
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps...   487   e-135
ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatul...   486   e-134
gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus...   484   e-134
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian...   484   e-134
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...   484   e-134
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   483   e-133
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   480   e-133
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...   478   e-132
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g...   478   e-132

>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
            lycopersicum]
          Length = 436

 Score =  543 bits (1399), Expect = e-152
 Identities = 273/403 (67%), Positives = 326/403 (80%), Gaps = 6/403 (1%)
 Frame = -3

Query: 1192 PSLQKLISTARAYSTSISA-----ANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLR 1028
            P   K IS +R  S    A      + DSDD  + + GR +N+SG K+EETV+  + KLR
Sbjct: 13   PQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLR 72

Query: 1027 LDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEP 848
            LDSW+SSRI+G+SRARVQSSIRSGLVSVNG + +KVSH+V+ GD V+C IA+L+PLRAEP
Sbjct: 73   LDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEP 132

Query: 847  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPET 671
            EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLV+GIL+HC L TV F   E L + 
Sbjct: 133  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDG 192

Query: 670  DDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAE 491
            +D S DE + FS ++    D      E+SVRPGIVHRLDKGTSGLLVVAK+EHS + LAE
Sbjct: 193  EDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLAE 252

Query: 490  QFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYK 311
            QFKKHTIKRVYVS+TCGVP+ ++GR+D+PIGRD  NRIRM A PG+   GK+RHAVSRYK
Sbjct: 253  QFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYK 312

Query: 310  VIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPS 131
            VIE LAGGG ALV+WRLETGRTHQIRAHAK+LGIPL+GD+VYGGTKNM LSLLQ + PP 
Sbjct: 313  VIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPPM 372

Query: 130  YHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
            +HG + QLV++++RPCLHAL+LGFRHP TGEN+ F+++PP DF
Sbjct: 373  FHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDF 415


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Solanum
            tuberosum]
          Length = 431

 Score =  539 bits (1389), Expect = e-151
 Identities = 264/376 (70%), Positives = 317/376 (84%), Gaps = 1/376 (0%)
 Frame = -3

Query: 1126 DSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVS 947
            DSDD  + + GR +N+SG K+EETV+  + KLRLDSW+SSRI+G+SRARVQSSIRSGLVS
Sbjct: 40   DSDDSPDEIPGRRSNYSGVKLEETVDGKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVS 99

Query: 946  VNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHP 767
            VNG + +KVSH+V+ GD V+C IA+L+PLRAEPEDIPLDIV+EDEHVLVVNKPAHMVVHP
Sbjct: 100  VNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHP 159

Query: 766  APGNATGTLVNGILNHCRLSTV-FLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSE 590
            APGNATGTLV+GIL+HC L T+ FL  E L + +D S DE + FS ++    D      E
Sbjct: 160  APGNATGTLVSGILHHCSLPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMCE 219

Query: 589  ASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRID 410
            +SVRPGIVHRLDKGTSGLLVVAK+E+S + LAEQFKKHTIKRVYVS+TCGVP+ ++GR+D
Sbjct: 220  SSVRPGIVHRLDKGTSGLLVVAKNENSLASLAEQFKKHTIKRVYVSITCGVPASVAGRVD 279

Query: 409  VPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRA 230
            +PIGRD  NRIRM A PG+   GK+RHAVSRYKVIE LA GG ALV+WRLETGRTHQIRA
Sbjct: 280  IPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYKVIEKLARGGSALVEWRLETGRTHQIRA 339

Query: 229  HAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHP 50
            HAKYLGIPL+GD+VYGGTKNM LSLLQ + PP +HG + QLV++++RPCLHAL+LGFRHP
Sbjct: 340  HAKYLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHP 399

Query: 49   HTGENLRFSQIPPTDF 2
             TGEN+ F+++PP DF
Sbjct: 400  FTGENIHFTRLPPPDF 415


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
            vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
            product [Vitis vinifera]
          Length = 433

 Score =  532 bits (1370), Expect = e-148
 Identities = 282/426 (66%), Positives = 328/426 (76%), Gaps = 8/426 (1%)
 Frame = -3

Query: 1255 MLSPQSLSWHSVKPLSISL----RNP-SLQKLISTARAYSTSISAANFDSDDFQNPVSGR 1091
            + S  S S+ S+   S S     RNP S  ++    RA S S       +D+    VSGR
Sbjct: 2    IFSLNSASFFSISHTSQSALLFPRNPKSCSRVFRILRACSNS-------TDEPLVSVSGR 54

Query: 1090 PNNFSGFKIEETV---ELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKV 920
              N++G ++EETV     DS KLRLDSW+SSRI GISRARVQSSIRSGLVSVN  I++KV
Sbjct: 55   RTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKV 114

Query: 919  SHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTL 740
            SHV+R GD VNC I+ELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNA+GTL
Sbjct: 115  SHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTL 174

Query: 739  VNGILNHCRLSTVFLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHR 560
            VNGIL+HC L TV L P    E DD S DE ++F+  Q        G  E ++RPGIVHR
Sbjct: 175  VNGILHHCSLPTVAL-PNRDSEEDDISDDEFNSFAAGQN------CGTCETNIRPGIVHR 227

Query: 559  LDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNR 380
            LDKGTSGLLVVAKDEHSH+HL+EQFK H+I RVY+SLT GVP+PLSGR+++P+GRDP NR
Sbjct: 228  LDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNR 287

Query: 379  IRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLL 200
            IRM A PG +  G+ARHA SRYKVIEILA GG ALV+WRLETGRTHQIRAHAKYLGIPLL
Sbjct: 288  IRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLL 347

Query: 199  GDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQ 20
            GD+VYGGTKNM LSLL+ R P S+HG + QLV++L+RPCLHA++LGF HP TG+N+ FS 
Sbjct: 348  GDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSC 407

Query: 19   IPPTDF 2
             PP DF
Sbjct: 408  QPPEDF 413


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
            sinensis]
          Length = 421

 Score =  511 bits (1316), Expect = e-142
 Identities = 274/425 (64%), Positives = 322/425 (75%), Gaps = 5/425 (1%)
 Frame = -3

Query: 1261 LKMLSPQSLSWHSV---KPLSIS-LRNPSLQKLISTARAYSTSISAANFDSDDFQNPVSG 1094
            + MLS  S SW S    K L  S  + P     I  AR  S+S    N      + P++ 
Sbjct: 1    MTMLSLNSASWGSASCTKGLQFSPTKIPFGVFKILRARCSSSSSGGNN------REPIA- 53

Query: 1093 RPNNFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSH 914
               N++G ++EETV+  + KLRLD+W+SSRI+GISRARVQSSIRSGLVS+NG +++KVSH
Sbjct: 54   ---NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110

Query: 913  VVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVN 734
             V+ GD+VNC I+ELQPLRAE EDIPLDIVYED++VLVVNKPAHMVVHPAPGNATGTLVN
Sbjct: 111  NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170

Query: 733  GILNHCRLSTVFLS-PEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRL 557
            GIL+HC L T+  S  EA  + +D S DE  + S+            S AS+RPGIVHRL
Sbjct: 171  GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSI------------SGASIRPGIVHRL 218

Query: 556  DKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRI 377
            DKGTSGLLVVAKDEHSH+HL+EQFK HTI+RVY+SLT GVPS  SGRI+VPI RDP NRI
Sbjct: 219  DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 278

Query: 376  RMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLG 197
            RM A PGS   G+ARHA SRYKVIEILAGGG ALV+WRLETGRTHQIRAHAKY+GIPLLG
Sbjct: 279  RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLG 338

Query: 196  DDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQI 17
            D+VYGGTKNM  SLLQ R  P  HG +L+LV+ L+RPCLHA++LGF HPHT E ++FS  
Sbjct: 339  DEVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCP 398

Query: 16   PPTDF 2
            PP DF
Sbjct: 399  PPADF 403


>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
            gi|222843675|gb|EEE81222.1| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 444

 Score =  503 bits (1295), Expect = e-140
 Identities = 284/453 (62%), Positives = 336/453 (74%), Gaps = 2/453 (0%)
 Frame = -3

Query: 1354 ISETMNRVITHGNLDLPQFRVHKKRTYFRIALKMLSPQSLSWHSVKPLSISLRNPSLQKL 1175
            +S T+++ IT  N           R Y R + +MLS  S+S  S     +S + P+  +L
Sbjct: 9    VSSTLDKHITKSN-----------RKYER-SKRMLSISSVSRCSAPSFFLS-QKPTASRL 55

Query: 1174 ISTARAYSTSISAANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSWLSSRING 995
            ++    +S+S    N +    QNP  G+  N+SG K+EE+V+  S K RLDSW+SSRI+G
Sbjct: 56   LTV---HSSSTREPNSN----QNP--GQRINYSGVKLEESVDSKSGKSRLDSWISSRISG 106

Query: 994  ISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYED 815
            ISRARVQSSI+SGLVSVNG +I+KVSH V+ GD VNC I+ELQPLRAEPE+IPLDIVYED
Sbjct: 107  ISRARVQSSIKSGLVSVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYED 166

Query: 814  EHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTVFLSPEALPETDDDSGDEASAFS 635
            E+VLVVNKPAHMVVHPAPGNATGTLVNGIL+HC L TV  S E L   +D S D+     
Sbjct: 167  ENVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTV-SSQEVLSGAEDVSDDD----- 220

Query: 634  VDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYV 455
             D+G    +      ASVRPGIVHRLDKGTSGLLVVAKDEHSH+HL+EQFK HTIKRVYV
Sbjct: 221  -DEG----LCSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYV 275

Query: 454  SLTCGVPSPLSGRIDVPIGRDPGNRIRM--IANPGSATCGKARHAVSRYKVIEILAGGGC 281
            SLTCGVP+P++GRIDVPIGRD  NRIRM  I  P     G+ARHA SRYKVIEILAGGG 
Sbjct: 276  SLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVEPNR---GQARHAASRYKVIEILAGGGS 332

Query: 280  ALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVA 101
            ALV+WRLETGRTHQIRAHAKY+GIPLLGD+VYGGT+NM LSLL+SR  PS H  +   ++
Sbjct: 333  ALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLS 392

Query: 100  KLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
             LERPCLHAL+LGF HP TG+ + FS  PP DF
Sbjct: 393  GLERPCLHALALGFTHPCTGKEIHFSCPPPPDF 425


>gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 433

 Score =  502 bits (1293), Expect = e-139
 Identities = 264/396 (66%), Positives = 311/396 (78%), Gaps = 5/396 (1%)
 Frame = -3

Query: 1174 ISTARAYSTSISAANFDSDDFQNPVSGRPNNFSGFKIEETVELDSR-KLRLDSWLSSRIN 998
            I  ARA  +S  AA       Q P+     +++G ++EETV+   + KLRLDSW+SSRI 
Sbjct: 40   ILRARARPSSGCAAKT-----QEPIR---TSYTGVQLEETVDGTKQGKLRLDSWISSRIQ 91

Query: 997  GISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYE 818
            GISRARVQSSI+SGLV+VNG +++KVSH +R GD VNC I+ELQPLRAEPEDIPLDIVYE
Sbjct: 92   GISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGDKVNCVISELQPLRAEPEDIPLDIVYE 151

Query: 817  DEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTVFLSP-EALPETDDDSGDEASA 641
            D+HVLVVNKP HMVVHPAPGNATGTLVNGIL+HC L TV LS  E L +T+D S D    
Sbjct: 152  DDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHCSLPTVALSEKEVLSDTEDVSDD---- 207

Query: 640  FSVDQGHTVDIGFGF---SEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTI 470
                     D GF +   + ASVRPGIVHRLDKGTSGLLVVAKDEHSHSHL+EQFK+HTI
Sbjct: 208  ---------DEGFCYGASAAASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLSEQFKQHTI 258

Query: 469  KRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILAG 290
            +RVY+SLTCGVPSP +GR+D+ IGRD  NR+RMIA PG    G+ARHA SRYKVIE+LAG
Sbjct: 259  QRVYISLTCGVPSPSAGRVDISIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVIEVLAG 318

Query: 289  GGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQ 110
            GG AL++WRLETGRTHQIRAHAKY+GIPLLGD+VYGGTK+M LSLL+ R PP+Y+  + +
Sbjct: 319  GGSALIQWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYNDQLSR 378

Query: 109  LVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
            LV++LERP LHAL LGF HPH+ E + FS  PP DF
Sbjct: 379  LVSRLERPYLHALVLGFEHPHSREMMHFSCQPPPDF 414


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
            sativus]
          Length = 453

 Score =  501 bits (1290), Expect = e-139
 Identities = 255/398 (64%), Positives = 309/398 (77%), Gaps = 1/398 (0%)
 Frame = -3

Query: 1192 PSLQKLISTARAYSTSISA-ANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSW 1016
            P+ +++ S     S++ S   + D D++    S R  N++G ++EETV+++  K+RLDSW
Sbjct: 23   PNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSW 82

Query: 1015 LSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIP 836
            +S RINGISRARVQSSIR+GLVSVNG +I+KVSH V+ GDV+NC I+ELQPLRAEPEDI 
Sbjct: 83   ISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDID 142

Query: 835  LDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTVFLSPEALPETDDDSG 656
            LDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVN ILNHC L  V  S        D S 
Sbjct: 143  LDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSD 202

Query: 655  DEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKH 476
            DE S+  V            SEA +RPGIVHRLDKGTSGLLVVAKDEHSH+HL+ QFK+H
Sbjct: 203  DEFSSIGVFSR--------VSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQH 254

Query: 475  TIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEIL 296
            +I+RVY+SLTCGVP   +GRI++PI RDP NRIRM A  G+     A++A SRY V+EIL
Sbjct: 255  SIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEIL 314

Query: 295  AGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHI 116
            A GG +LV+WRLETGRTHQIRAHAKY+GIPLLGD+VYGGTK+M +SLL++R   + HG +
Sbjct: 315  AQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQL 374

Query: 115  LQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
            +QLV+ LERPCLHAL+LGF HPHTG+N+RFS  PPTDF
Sbjct: 375  MQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDF 412


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
            chloroplastic-like [Cucumis sativus]
          Length = 452

 Score =  497 bits (1280), Expect = e-138
 Identities = 255/398 (64%), Positives = 309/398 (77%), Gaps = 1/398 (0%)
 Frame = -3

Query: 1192 PSLQKLISTARAYSTSISA-ANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSW 1016
            P+ +++ S     S++ S   + D D++    S R  N++G ++EETV+++  K+RLDSW
Sbjct: 23   PNRRRIGSNVLRISSNFSTRCSSDYDEYSEAQSERIANYAGTRLEETVDVNPGKVRLDSW 82

Query: 1015 LSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIP 836
            +S RINGISRARVQSSIR+GLVSVNG +I+KVSH V+ GDV+NC I+ELQPLRAEPEDI 
Sbjct: 83   ISCRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDID 142

Query: 835  LDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTVFLSPEALPETDDDSG 656
            LDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVN ILNHC L  V  S        D S 
Sbjct: 143  LDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSD 202

Query: 655  DEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKH 476
            DE S+  V            SEA +RPGIVHRLDKGTSGLLVVAKDEHSH+HL+ QFK+H
Sbjct: 203  DEFSSIGVFS--------RVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQH 254

Query: 475  TIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEIL 296
            +I+RVY+SLTCGVP   +GRI++PI RDP NRIRM A  G+     A++A SRY V+EIL
Sbjct: 255  SIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTNN-PHAKYAASRYNVMEIL 313

Query: 295  AGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHI 116
            A GG +LV+WRLETGRTHQIRAHAKY+GIPLLGD+VYGGTK+M +SLL++R   + HG +
Sbjct: 314  AQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQL 373

Query: 115  LQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
            +QLV+ LERPCLHAL+LGF HPHTG+N+RFS  PPTDF
Sbjct: 374  MQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDF 411


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
            arietinum]
          Length = 438

 Score =  497 bits (1279), Expect = e-138
 Identities = 252/390 (64%), Positives = 305/390 (78%), Gaps = 3/390 (0%)
 Frame = -3

Query: 1162 RAYSTSISAANFDSDDFQNPVSGRPNNFSGFKIEETV--ELDSRKLRLDSWLSSRINGIS 989
            R  + ++S    DS+    P S    N++G ++EE V  E+ S KLRLD+W+SSRINGIS
Sbjct: 41   RGVARAVSGLADDSNSNGEPKS----NYAGVRLEEIVDGEIKSGKLRLDTWISSRINGIS 96

Query: 988  RARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEH 809
            RARVQSSI++GLV VNG +++KVS  VR GD + C IAELQ LRA PE+IPLDIVYEDEH
Sbjct: 97   RARVQSSIKAGLVHVNGRLVDKVSFNVRAGDEIKCTIAELQKLRAVPENIPLDIVYEDEH 156

Query: 808  VLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPETDDDSGDEASAFSV 632
            +LV+NKPAHMVVHPAPGN +GTLVNGIL+HC L  V F   EAL +T +DS DE + F+ 
Sbjct: 157  LLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDT-EDSDDELNGFTS 215

Query: 631  DQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVS 452
                   +    S AS+RPGIVHRLDKGTSGLLVVAKDEHSH  L+EQFK  TIKRVY+S
Sbjct: 216  QAPSCEGLDSRLSIASIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKLRTIKRVYIS 275

Query: 451  LTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALV 272
            LT GVP+P++GR++VP+GRDP NR+RM A  G  T  KARHA SRYKVIEILAGG CALV
Sbjct: 276  LTAGVPTPVAGRVEVPVGRDPNNRLRMTAVAGPLTSMKARHAASRYKVIEILAGGSCALV 335

Query: 271  KWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLE 92
            +W+LETGRTHQIRAHA+YLG+PLLGD+VYGGTKNM LSLL+ R  PS HG + ++V++L+
Sbjct: 336  EWKLETGRTHQIRAHARYLGVPLLGDEVYGGTKNMVLSLLRPRTTPSLHGEMTKMVSELD 395

Query: 91   RPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
            RPCLHA++LGF+HPHTGE + FS  PP DF
Sbjct: 396  RPCLHAMTLGFQHPHTGEQVHFSCEPPVDF 425


>gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score =  493 bits (1268), Expect = e-136
 Identities = 252/400 (63%), Positives = 303/400 (75%), Gaps = 2/400 (0%)
 Frame = -3

Query: 1195 NPSLQKLISTARAYSTSISAANFDSDDFQNPVSGRPNNFSGFKIEETVE--LDSRKLRLD 1022
            +PS   L +T+  + ++I++A        +    R  NFSG ++EE V+  + S KLRLD
Sbjct: 25   SPSSLFLYATSYKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVDSRIGSAKLRLD 84

Query: 1021 SWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPED 842
            SW+SSRINGISRARVQSSI+SGLV VNG +++K S  V+ GD + C IAELQ LRA PE+
Sbjct: 85   SWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIAELQKLRAVPEN 144

Query: 841  IPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTVFLSPEALPETDDD 662
            IPLDIVYEDEHVLV+NKPAHMVVHPAPGN +GTLVNGIL+HC L  V  S E      +D
Sbjct: 145  IPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEGLSDTED 204

Query: 661  SGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFK 482
              DE +++              S +S+RPGIVHRLDKGTSGLLVVAKDEHSH  L+EQFK
Sbjct: 205  CDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFK 264

Query: 481  KHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIE 302
            + TIKRVYVSLT GVP P+SGR+DVP+GRD  NR+RM A  G     KARHA SRYKVIE
Sbjct: 265  QRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAASRYKVIE 324

Query: 301  ILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHG 122
            ILAGG C+LV+W+LETGRTHQIRAHAKYLG+PLLGD+VYGGTK+M LSLL+ R+P S HG
Sbjct: 325  ILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRSPISLHG 384

Query: 121  HILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
             I+Q+V+ L+RPCLHAL+LGF+HPHTGE + FS  PP DF
Sbjct: 385  KIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDF 424


>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
            gi|557086678|gb|ESQ27530.1| hypothetical protein
            EUTSA_v10018588mg [Eutrema salsugineum]
          Length = 432

 Score =  490 bits (1261), Expect = e-136
 Identities = 251/361 (69%), Positives = 292/361 (80%), Gaps = 1/361 (0%)
 Frame = -3

Query: 1084 NFSGFKIEETVELDSR-KLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVV 908
            N +G K+EETVE   + K+RLDSW+SSR++G+SRARVQSSIR GLVSVNG +++KVSH V
Sbjct: 65   NNAGLKLEETVEAAVKAKIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRVVDKVSHNV 124

Query: 907  RDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGI 728
            + GD VNC I+ELQPL+AEPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGN TGTLVNGI
Sbjct: 125  KAGDEVNCTISELQPLKAEPEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPTGTLVNGI 184

Query: 727  LNHCRLSTVFLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKG 548
            L+HC L  V     A    +DDS +E    S D+  T         ASVRPGIVHRLDKG
Sbjct: 185  LHHCSLPCV-----AYSNPEDDSDEET--LSDDEEMTSSSSLA---ASVRPGIVHRLDKG 234

Query: 547  TSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMI 368
            TSGLLVVAKDEHSH+HLAEQFK HTI+RVY+SLT GVPSP  GR+D+PIGRDP NRIRM 
Sbjct: 235  TSGLLVVAKDEHSHAHLAEQFKLHTIERVYISLTSGVPSPSQGRVDIPIGRDPNNRIRMA 294

Query: 367  ANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDV 188
            A PGS + GKARHA SRYKVIE LAGGG ALV+WRLETGRTHQIRAHAKY+G+PLLGD+V
Sbjct: 295  AIPGSLSRGKARHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEV 354

Query: 187  YGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPT 8
            YGGTK++ LSLLQ R   S    IL+LV++++RPCLHA+ LGF HP TGE ++FS  PP+
Sbjct: 355  YGGTKSVALSLLQRRVSRSDQEQILELVSRMDRPCLHAIVLGFEHPCTGEVVKFSCPPPS 414

Query: 7    D 5
            D
Sbjct: 415  D 415


>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
            gi|482570987|gb|EOA35175.1| hypothetical protein
            CARUB_v10020321mg [Capsella rubella]
          Length = 432

 Score =  487 bits (1254), Expect = e-135
 Identities = 251/361 (69%), Positives = 293/361 (81%), Gaps = 1/361 (0%)
 Frame = -3

Query: 1084 NFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVR 905
            N +G +IEETV+    K+RLDSW+SSRING+SRARVQSSIR GLV+VNG +++KVSH V+
Sbjct: 65   NNAGLRIEETVDDLKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVK 124

Query: 904  DGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGIL 725
             GD VNC I+ELQPL+AE EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN TGTLVNGIL
Sbjct: 125  AGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGIL 184

Query: 724  NHCRLSTV-FLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKG 548
            +HC L +V + SPE     DDDS DE+  FS  +  T    +    ASVRPGIVHRLDKG
Sbjct: 185  HHCSLPSVAYSSPE-----DDDSDDES--FSDGEEMTSSSSYA---ASVRPGIVHRLDKG 234

Query: 547  TSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMI 368
            T+GLLVVAKDEHSH+HLAEQFK HTI+RVYVSLT GVPSP  GRI++PIGRD  NRIRM 
Sbjct: 235  TTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMA 294

Query: 367  ANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDV 188
            A PG  + G+ARHA SRYKVIE LAGGG ALV+WRLETGRTHQIRAHAKY+G+PLLGD+V
Sbjct: 295  AIPGGLSSGRARHAASRYKVIETLAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEV 354

Query: 187  YGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPT 8
            YGGTK+M LSLLQ R   S    I++L+++L+RPCLHA+ LGF HP TG+ ++FS  PP 
Sbjct: 355  YGGTKSMALSLLQKRVCRSDQDEIIELISRLDRPCLHAIVLGFTHPCTGKIVKFSCPPPP 414

Query: 7    D 5
            D
Sbjct: 415  D 415


>ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355492867|gb|AES74070.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 465

 Score =  486 bits (1250), Expect = e-134
 Identities = 249/402 (61%), Positives = 303/402 (75%), Gaps = 12/402 (2%)
 Frame = -3

Query: 1171 STARAYSTSISAANFDSDDFQNPVSGRPNNFSGFKIEETVE---LDSRKLRLDSWLSSRI 1001
            S A+++ST  + +N  +++ ++       N++G  +EE V    + S KLRLDSW+SSRI
Sbjct: 44   SIAKSFSTFSNDSNSSTEEPKS-------NYAGVLLEEIVHDGGIKSGKLRLDSWISSRI 96

Query: 1000 NGISRARVQSSIRSGLVSVNGHIINKVSHVV---------RDGDVVNCKIAELQPLRAEP 848
            NGISRARVQSSI++GLV VNG +++K+S VV         R GD + C IAELQ LRA P
Sbjct: 97   NGISRARVQSSIKAGLVHVNGRVVDKLSIVVILEQVSFNVRAGDEIKCTIAELQQLRAVP 156

Query: 847  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTVFLSPEALPETD 668
            E+IPLDIVYED+H+LV+NKPAHMVVHPAPGN +GTLVNGIL+HC L  V  S E      
Sbjct: 157  ENIPLDIVYEDDHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDT 216

Query: 667  DDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQ 488
            +DS DE + FS     +V +    S AS+RPGIVHRLDKGTSGLLVVAK+EHSH  L+EQ
Sbjct: 217  EDSDDELNGFSSQSSSSVGLDSRLSMASIRPGIVHRLDKGTSGLLVVAKNEHSHMKLSEQ 276

Query: 487  FKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKV 308
            FK  TIKRVYVSLT GVP+P+SGR++VP+GRDP NR+RMIA  G     KARHA SRYKV
Sbjct: 277  FKLRTIKRVYVSLTAGVPTPVSGRVEVPVGRDPNNRLRMIAVAGLVNSVKARHAASRYKV 336

Query: 307  IEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSY 128
            IEILAGG CALV+W+LETGRTHQIRAHAKYLG+PLLGD+VYGGTK+M LSLL+ R  PS 
Sbjct: 337  IEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTTPSL 396

Query: 127  HGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
            H  + + V+ L+RPCLHA +LGF+HPHTGE + FS  PP DF
Sbjct: 397  HSEMFKTVSGLDRPCLHASTLGFQHPHTGEQVHFSCEPPVDF 438


>gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score =  484 bits (1246), Expect = e-134
 Identities = 252/411 (61%), Positives = 303/411 (73%), Gaps = 13/411 (3%)
 Frame = -3

Query: 1195 NPSLQKLISTARAYSTSISAANFDSDDFQNPVSGRPNNFSGFKIEETVE--LDSRKLRLD 1022
            +PS   L +T+  + ++I++A        +    R  NFSG ++EE V+  + S KLRLD
Sbjct: 25   SPSSLFLYATSYKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVDSRIGSAKLRLD 84

Query: 1021 SWLSSRINGISRARVQSSIRSGLVSVNGHIINK-----------VSHVVRDGDVVNCKIA 875
            SW+SSRINGISRARVQSSI+SGLV VNG +++K            S  V+ GD + C IA
Sbjct: 85   SWISSRINGISRARVQSSIKSGLVHVNGRVVDKKSKHQPEQYALASFNVKAGDQIKCTIA 144

Query: 874  ELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTVFL 695
            ELQ LRA PE+IPLDIVYEDEHVLV+NKPAHMVVHPAPGN +GTLVNGIL+HC L  V  
Sbjct: 145  ELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEF 204

Query: 694  SPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDE 515
            S E      +D  DE +++              S +S+RPGIVHRLDKGTSGLLVVAKDE
Sbjct: 205  SKEEGLSDTEDCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDE 264

Query: 514  HSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKA 335
            HSH  L+EQFK+ TIKRVYVSLT GVP P+SGR+DVP+GRD  NR+RM A  G     KA
Sbjct: 265  HSHMKLSEQFKQRTIKRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKA 324

Query: 334  RHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSL 155
            RHA SRYKVIEILAGG C+LV+W+LETGRTHQIRAHAKYLG+PLLGD+VYGGTK+M LSL
Sbjct: 325  RHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSL 384

Query: 154  LQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
            L+ R+P S HG I+Q+V+ L+RPCLHAL+LGF+HPHTGE + FS  PP DF
Sbjct: 385  LRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDF 435


>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
            gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
            [Arabidopsis thaliana]
          Length = 430

 Score =  484 bits (1246), Expect = e-134
 Identities = 248/360 (68%), Positives = 287/360 (79%)
 Frame = -3

Query: 1084 NFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVR 905
            N +G +IEE V+    K+RLDSW+SSRING+SRARVQSSIR GLV+VNG +++KVSH V+
Sbjct: 65   NNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVK 124

Query: 904  DGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGIL 725
             GD VNC I+ELQPL+AE EDIPLDIVYED+HVLVVNKPAHMVVHPAPGN TGTLVNGIL
Sbjct: 125  SGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGIL 184

Query: 724  NHCRLSTVFLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGT 545
            +HC L  V  S     E DDDS +E   FS D+  T         ASVRPGIVHRLDKGT
Sbjct: 185  HHCSLPCVDYSNS---EEDDDSDEET--FSDDEEMTTSPSS--YAASVRPGIVHRLDKGT 237

Query: 544  SGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIA 365
            +GLLVVAKDEHSH+HLAEQFK HTI+RVYVSLT GVPSP  GRI++PIGRD  NRIRM A
Sbjct: 238  TGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAA 297

Query: 364  NPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVY 185
             PG    G+ARHA SRYKVIE  AGGG ALV+WRLETGRTHQIRAHAKY+G+PLLGD+VY
Sbjct: 298  IPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVY 357

Query: 184  GGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTD 5
            GGTK+M LSLLQ R   S    I++L+++++RPCLHA+ LGF HP TGE ++FS  PP+D
Sbjct: 358  GGTKSMALSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSD 417


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
            X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
            PREDICTED: RNA pseudouridine synthase 2,
            chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score =  484 bits (1245), Expect = e-134
 Identities = 249/394 (63%), Positives = 304/394 (77%), Gaps = 5/394 (1%)
 Frame = -3

Query: 1168 TARAYSTSISAANFDSDDFQNPVSGRPN-NFSGFKIEETVE--LDSRKLRLDSWLSSRIN 998
            +A A + S SA + DSD       G P  NFSG ++EE V+  + S KLRLD+W+SSRIN
Sbjct: 41   SATASAASGSAGDSDSD-------GEPKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRIN 93

Query: 997  GISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYE 818
            GISRARVQSSI+SGLV VNG +++KVS  V+ GD + C IAELQ LRA P++IPLDIVYE
Sbjct: 94   GISRARVQSSIKSGLVHVNGRVVDKVSFNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYE 153

Query: 817  DEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPETDDDSGDEASA 641
            DEHVLV+NKPAHMVVHPAPGN +GTLVNGIL+HC L  V F   EAL +T+D   +  S 
Sbjct: 154  DEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTEDSDDEFNSY 213

Query: 640  FSVDQG-HTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKR 464
             S+      ++     +  S+RPGIVHRLDKGTSGLLVVAKDEHSH  L+EQFK+ TIKR
Sbjct: 214  ISLASSCEGLNSRLSVASNSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKR 273

Query: 463  VYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILAGGG 284
            +YVSLT GVP+P++GR++VP+GRD  NRIRM A  G     KAR+A SRYKVIEILAGG 
Sbjct: 274  LYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSKKARYAASRYKVIEILAGGS 333

Query: 283  CALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLV 104
            C+LV+W+LETGRTHQIRAHAKYLG+PLLGD++YGGTK+M LSLL+ R P S H  I+++V
Sbjct: 334  CSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVLSLLRPRTPISLHSKIVKMV 393

Query: 103  AKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
            ++L+RPCLHA +LGF+HPHTGE + FS  PP DF
Sbjct: 394  SRLDRPCLHAWTLGFQHPHTGEQVHFSCEPPADF 427


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  483 bits (1242), Expect = e-133
 Identities = 262/429 (61%), Positives = 306/429 (71%), Gaps = 30/429 (6%)
 Frame = -3

Query: 1198 RNPSLQKLISTARAYSTSISAANFDSDDFQNPVSGRPNNFSGFKIEETV---ELDSRKLR 1028
            RNP      S +R +      +N  +D+    VS R  N++G ++EETV     DS KLR
Sbjct: 154  RNPK-----SCSRVFRILRDCSN-STDEPLVSVSSRRTNYAGVRLEETVVDVNSDSGKLR 207

Query: 1027 LDSWLSSRINGISRARVQSSIRSGLVSVNGHIINK------------------------- 923
            LDSW+SSRI GISRARVQSSIRSGLVSVN  I++K                         
Sbjct: 208  LDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKAMLVSRKFEVGEGKKIEEKDPITYS 267

Query: 922  --VSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNAT 749
              VSHV+R GD VNC I+ELQPLRAEPEDIPLDIVYEDEHV          VHPAPGNA+
Sbjct: 268  EQVSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHV----------VHPAPGNAS 317

Query: 748  GTLVNGILNHCRLSTVFLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGI 569
            GTLVNGIL+HC L TV L P    E DD   DE ++F+  Q        G  E ++RPGI
Sbjct: 318  GTLVNGILHHCSLPTVAL-PNRDSEEDDILDDEFNSFAAGQN------CGTCETNIRPGI 370

Query: 568  VHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDP 389
            VHRLDKGTSGLLVVAKDEHSH+HL+EQFK H+I RVY+SLT GVP+PLSGR+++P+GRDP
Sbjct: 371  VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDP 430

Query: 388  GNRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGI 209
             NRIRM A PG +  G+ARHA SRYKVIEILA GG ALV+WRLETGRTHQIRAHAKYLGI
Sbjct: 431  NNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGI 490

Query: 208  PLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLR 29
            PLLGD+VYGGTKNM LSLL+ R P S+HG + QLV++L+RPCLHA++LGF HP TG+N+ 
Sbjct: 491  PLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVH 550

Query: 28   FSQIPPTDF 2
            FS  PP DF
Sbjct: 551  FSCQPPEDF 559


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
            brachyantha]
          Length = 442

 Score =  480 bits (1236), Expect = e-133
 Identities = 246/409 (60%), Positives = 297/409 (72%), Gaps = 4/409 (0%)
 Frame = -3

Query: 1216 PLSISLRNPSLQKLISTARAYSTSISAANFDSDDFQNPVSGRPNNFSGFKIEETVELDSR 1037
            P +I+    +L +       +  +  A    SD      S R     G ++EE V     
Sbjct: 9    PPAIATALSALLRRRKNGARFLRASQARCISSDANAEAASSRRGGHGGTRLEEAVPAGEG 68

Query: 1036 KLRLDSWLSSRING--ISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQP 863
            + R+D+W+SSR+ G  +SRARVQ+SIR+GLV+VNG  ++KVSH+V+ GD+V+C ++ELQP
Sbjct: 69   RSRIDAWISSRLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKGGDMVSCTVSELQP 128

Query: 862  LRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV--FLSP 689
            LRAEPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGNA GTLVN IL+HC++ST       
Sbjct: 129  LRAEPEDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANGTLVNAILHHCKISTFTCLARN 188

Query: 688  EALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHS 509
                E  D S D+   F VDQ  T ++     EA VRPGIVHRLDKGTSGLLVVAKDEHS
Sbjct: 189  STDDECPDSSDDDIDVFHVDQFTTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHS 248

Query: 508  HSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARH 329
            H+ LAEQFK HTI+RVY+SLTCG P+P SGRI+VPI RDP NRIRMIA PGS     ARH
Sbjct: 249  HAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSGH-RYARH 307

Query: 328  AVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQ 149
            A SRYKV E+ AGGG ALV+W+LETGRTHQIRAHAKYLGIPLLGD+ YGGTK+M LSLL+
Sbjct: 308  AASRYKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLR 367

Query: 148  SRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 2
             R    YH  +  L+AK++RPCLHA  LGF+HPH+G+ L FS  PP DF
Sbjct: 368  PRTSSRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDF 416


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score =  478 bits (1231), Expect = e-132
 Identities = 237/368 (64%), Positives = 288/368 (78%), Gaps = 4/368 (1%)
 Frame = -3

Query: 1093 RPNNFSGFKIEETVELDSRKLRLDSWLSSRING--ISRARVQSSIRSGLVSVNGHIINKV 920
            R     G ++EE V     + R+D+W+S+R+ G  +SRAR+Q+SIR+GLV VNG  ++KV
Sbjct: 52   RRGGHGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKV 111

Query: 919  SHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTL 740
            SH+V+ GD+V+C ++ELQPLRAEPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGNA GTL
Sbjct: 112  SHMVKGGDIVSCTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTL 171

Query: 739  VNGILNHCRLST-VFLSPEALP-ETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIV 566
            VN IL+HC++ST   L+  ++  E  D S D+   F +DQ  T ++     EA VRPGIV
Sbjct: 172  VNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIV 231

Query: 565  HRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPG 386
            HRLDKGTSGLLVVAKDEHSH+ LAEQFK HTI+RVY+SLTCG P+P SGRI+VPI RDP 
Sbjct: 232  HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPN 291

Query: 385  NRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIP 206
            NRIRMIA PGS     ARHA SRYKV E+ AGGG ALV+WRLETGRTHQIRAHAKYLGIP
Sbjct: 292  NRIRMIATPGSGH-RYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIP 350

Query: 205  LLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRF 26
            LLGD+ YGGTK+M LSLL+ R P  YH  +  +++K++RPCLHA  LGF+HPH+G+ L F
Sbjct: 351  LLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEF 410

Query: 25   SQIPPTDF 2
            S  PP DF
Sbjct: 411  SCPPPDDF 418


>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
            gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
            pseudouridine synthase 2, chloroplastic; AltName:
            Full=RNA pseudouridylate synthase 2; AltName:
            Full=RNA-uridine isomerase 2; Flags: Precursor
            gi|53791796|dbj|BAD53590.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|54291043|dbj|BAD61720.1| ribosomal large subunit
            pseudouridine synthase-like [Oryza sativa Japonica Group]
            gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa
            Japonica Group] gi|215706335|dbj|BAG93191.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|222636236|gb|EEE66368.1| hypothetical protein
            OsJ_22675 [Oryza sativa Japonica Group]
          Length = 445

 Score =  478 bits (1229), Expect = e-132
 Identities = 237/368 (64%), Positives = 287/368 (77%), Gaps = 4/368 (1%)
 Frame = -3

Query: 1093 RPNNFSGFKIEETVELDSRKLRLDSWLSSRING--ISRARVQSSIRSGLVSVNGHIINKV 920
            R     G ++EE V     + R+D+W+S+R+ G  +SRAR+Q+SIR+GLV VNG  ++KV
Sbjct: 52   RRGGHGGTRLEEAVPAGEGRSRIDAWISARLGGGGVSRARIQASIRAGLVVVNGRPVSKV 111

Query: 919  SHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTL 740
            SH+V+ GD+V+C + ELQPLRAEPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGNA GTL
Sbjct: 112  SHMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTL 171

Query: 739  VNGILNHCRLST-VFLSPEALP-ETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIV 566
            VN IL+HC++ST   L+  ++  E  D S D+   F +DQ  T ++     EA VRPGIV
Sbjct: 172  VNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGIV 231

Query: 565  HRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPG 386
            HRLDKGTSGLLVVAKDEHSH+ LAEQFK HTI+RVY+SLTCG P+P SGRI+VPI RDP 
Sbjct: 232  HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPN 291

Query: 385  NRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIP 206
            NRIRMIA PGS     ARHA SRYKV E+ AGGG ALV+WRLETGRTHQIRAHAKYLGIP
Sbjct: 292  NRIRMIATPGSGH-RYARHAASRYKVREVFAGGGSALVEWRLETGRTHQIRAHAKYLGIP 350

Query: 205  LLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRF 26
            LLGD+ YGGTK+M LSLL+ R P  YH  +  +++K++RPCLHA  LGF+HPH+G+ L F
Sbjct: 351  LLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEF 410

Query: 25   SQIPPTDF 2
            S  PP DF
Sbjct: 411  SCPPPDDF 418