BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00014087
         (1170 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   397   e-108
ref|XP_006344572.1| PREDICTED: uncharacterized protein LOC102592...   389   e-105
emb|CBI33811.3| unnamed protein product [Vitis vinifera]              387   e-105
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   386   e-104
ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   386   e-104
ref|XP_002331405.1| predicted protein [Populus trichocarpa]           386   e-104
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   384   e-104
gb|EPS66156.1| pseudouridine synthase, partial [Genlisea aurea]       382   e-103
ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-lik...   382   e-103
gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]        380   e-103
ref|XP_003532450.2| PREDICTED: tRNA pseudouridine synthase A, mi...   375   e-101
gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]     372   e-100
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...   369   2e-99
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik...   369   2e-99
gb|ESW32209.1| hypothetical protein PHAVU_002G302500g [Phaseolus...   368   2e-99
gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]     368   3e-99
gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus pe...   368   3e-99
ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago trun...   361   3e-97
ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-lik...   360   6e-97
gb|AFK45334.1| unknown [Medicago truncatula]                          357   7e-96

>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  397 bits (1020), Expect = e-108
 Identities = 212/356 (59%), Positives = 250/356 (70%), Gaps = 9/356 (2%)
 Frame = -2

Query: 1169 YGAEVVEDCGKPELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIER 990
            +  E+VE   K E  +V   DR GRWAR+TF+I+LSYHG SFDGWQKQPGLNTVQGL+E 
Sbjct: 80   HDGEIVEASDKTEFGNVLTKDRGGRWARLTFKIVLSYHGASFDGWQKQPGLNTVQGLVEA 139

Query: 989  SLGKFVDXXXXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAI 810
            SLG+FVD           LP+EG   VAGRTDKGVTAL+QVCSFYTW+KD+K  DIEDAI
Sbjct: 140  SLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVKVQDIEDAI 199

Query: 809  NGAAPGKIRAISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLD-SDVSG 633
            NGAAPGK+R ISVS+VSR FHPNFSAKWRHYFYIFP ND   D+  Q  +N +D   +S 
Sbjct: 200  NGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDG--DDGEQISENEMDIQKISF 257

Query: 632  DGQCGE--------HFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLS 477
            + + GE        + G EN+ + I D D  E  +  KP +F +SRV+QLL+QLEGKLLS
Sbjct: 258  NEKYGEQGSECPAQYNGGENTENLIFD-DDGEFESRKKPSTFSISRVDQLLRQLEGKLLS 316

Query: 476  FRMFARDTKASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRV 297
            +++FARDTKASRNIGPPTECFVFHARA EA L  + DG  T+ MC+ELVANRFLRKMVRV
Sbjct: 317  YKIFARDTKASRNIGPPTECFVFHARATEARLQFSDDGEGTKVMCIELVANRFLRKMVRV 376

Query: 296  LVXXXXXXXXXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
            LV              ALLKLMD            PDGLCL+DVG+TEF+ + C I
Sbjct: 377  LVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEFDPQICFI 432


>ref|XP_006344572.1| PREDICTED: uncharacterized protein LOC102592314 [Solanum tuberosum]
          Length = 436

 Score =  389 bits (999), Expect = e-105
 Identities = 206/352 (58%), Positives = 251/352 (71%), Gaps = 6/352 (1%)
 Frame = -2

Query: 1163 AEVVEDCGKPELVSVPAPDRT----GRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLI 996
            AE+ ED  K ELV++P  D++    GRWAR  F I+LSYHG SFDGWQKQP LNTVQGL+
Sbjct: 88   AEIREDHEKSELVNIPVKDKSRDKSGRWARANFMIVLSYHGGSFDGWQKQPDLNTVQGLV 147

Query: 995  ERSLGKFVDXXXXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIED 816
            ERSLG+FVD           LP+E CALVAGRTDKGV+A +QVCSFYTWRKD+K  D++ 
Sbjct: 148  ERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKGVSASQQVCSFYTWRKDVKIEDVKA 207

Query: 815  AINGAAPGKIRAISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLD--SD 642
            A++ AAPGKIR +S+++VSREFHPNFSAKWRHY YIFP +D  V    Q  +  +D  +D
Sbjct: 208  ALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHYLYIFPIDD--VLGEKQRGQIWIDGSTD 265

Query: 641  VSGDGQCGEHFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFA 462
            V    +CG+   ++++ +EI+D +  E   GNKP  FEV +VN+LL QLEGKLLS++MFA
Sbjct: 266  VHQQNECGKSDIDKSNVNEIND-ENNELVHGNKPTKFEVGKVNRLLGQLEGKLLSYKMFA 324

Query: 461  RDTKASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXX 282
            RDTKASRNIGPPTECFVFHARA E  +   KDG+  +TMC+ELVANRFLRKMVRVLV   
Sbjct: 325  RDTKASRNIGPPTECFVFHARAIETSIPCAKDGSLMKTMCIELVANRFLRKMVRVLVATA 384

Query: 281  XXXXXXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLIP 126
                       ALLKLMD            PDGLCLVDVGYT+++ + CLIP
Sbjct: 385  IREAAAGADDDALLKLMDATCRRATAPPAPPDGLCLVDVGYTDYDIRHCLIP 436


>emb|CBI33811.3| unnamed protein product [Vitis vinifera]
          Length = 402

 Score =  387 bits (995), Expect = e-105
 Identities = 205/347 (59%), Positives = 237/347 (68%)
 Frame = -2

Query: 1169 YGAEVVEDCGKPELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIER 990
            +  E+VE   K E  +V   DR GRWAR+TF+I+LSYHG SFDGWQKQPGLNTVQGL+E 
Sbjct: 80   HDGEIVEASDKTEFGNVLTKDRGGRWARLTFKIVLSYHGASFDGWQKQPGLNTVQGLVEA 139

Query: 989  SLGKFVDXXXXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAI 810
            SLG+FVD           LP+EG   VAGRTDKGVTAL+QVCSFYTW+KD+K  DIEDAI
Sbjct: 140  SLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVKVQDIEDAI 199

Query: 809  NGAAPGKIRAISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDSDVSGD 630
            NGAAPGK+R ISVS+VSR FHPNFSAKWRHYFYIFP ND                   GD
Sbjct: 200  NGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLND-------------------GD 240

Query: 629  GQCGEHFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTK 450
                   GE+ S +E+D    +      KP +F +SRV+QLL+QLEGKLLS+++FARDTK
Sbjct: 241  D------GEQISENEMDIQKISFNENRKKPSTFSISRVDQLLRQLEGKLLSYKIFARDTK 294

Query: 449  ASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXX 270
            ASRNIGPPTECFVFHARA EA L  + DG  T+ MC+ELVANRFLRKMVRVLV       
Sbjct: 295  ASRNIGPPTECFVFHARATEARLQFSDDGEGTKVMCIELVANRFLRKMVRVLVATSIREA 354

Query: 269  XXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
                   ALLKLMD            PDGLCL+DVG+TEF+ + C I
Sbjct: 355  AAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEFDPQICFI 401


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
            gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
            family protein [Populus trichocarpa]
          Length = 457

 Score =  386 bits (991), Expect = e-104
 Identities = 204/348 (58%), Positives = 233/348 (66%), Gaps = 13/348 (3%)
 Frame = -2

Query: 1130 LVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXXX 951
            L  V   D++GRWARVTF+I+LSYHG SFDGWQKQPGLNTVQGL+E+SLG+FVD      
Sbjct: 119  LEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQ 178

Query: 950  XXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAISV 771
                  P+EGCA VAGRTDKGV+AL+QVCSFYTWRKD+K  +IEDAIN  APGK+R  S+
Sbjct: 179  LKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESI 238

Query: 770  SQVSREFHPNFSAKWRHYFYIFPFND-------------ENVDEASQCKKNVLDSDVSGD 630
            S+VSR FHPNFSAKWR Y YIFP ND             EN      C+K          
Sbjct: 239  SEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQ--------R 290

Query: 629  GQCGEHFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTK 450
             +CGE   EEN  + I   D+ E +   KP SF V RVNQLLQQLEGKLLS++MFARDTK
Sbjct: 291  NECGELASEENVENSIIS-DEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTK 349

Query: 449  ASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXX 270
            ASRN+GPPTECF++HARA E  L S       R MCVEL+ANRFLRKMVRVLV       
Sbjct: 350  ASRNVGPPTECFLYHARATETRLPSPDHEKGIRVMCVELIANRFLRKMVRVLVATSVREA 409

Query: 269  XXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLIP 126
                   ALLKLMD            PDGLCLVDVGYTEF+ ++CLIP
Sbjct: 410  AAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCLIP 457


>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
            gi|550318755|gb|ERP50021.1| hypothetical protein
            POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  386 bits (991), Expect = e-104
 Identities = 204/348 (58%), Positives = 233/348 (66%), Gaps = 13/348 (3%)
 Frame = -2

Query: 1130 LVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXXX 951
            L  V   D++GRWARVTF+I+LSYHG SFDGWQKQPGLNTVQGL+E+SLG+FVD      
Sbjct: 110  LEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQ 169

Query: 950  XXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAISV 771
                  P+EGCA VAGRTDKGV+AL+QVCSFYTWRKD+K  +IEDAIN  APGK+R  S+
Sbjct: 170  LKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESI 229

Query: 770  SQVSREFHPNFSAKWRHYFYIFPFND-------------ENVDEASQCKKNVLDSDVSGD 630
            S+VSR FHPNFSAKWR Y YIFP ND             EN      C+K          
Sbjct: 230  SEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQ--------R 281

Query: 629  GQCGEHFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTK 450
             +CGE   EEN  + I   D+ E +   KP SF V RVNQLLQQLEGKLLS++MFARDTK
Sbjct: 282  NECGELASEENVENSIIS-DEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTK 340

Query: 449  ASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXX 270
            ASRN+GPPTECF++HARA E  L S       R MCVEL+ANRFLRKMVRVLV       
Sbjct: 341  ASRNVGPPTECFLYHARATETRLPSPDHEKGIRVMCVELIANRFLRKMVRVLVATSVREA 400

Query: 269  XXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLIP 126
                   ALLKLMD            PDGLCLVDVGYTEF+ ++CLIP
Sbjct: 401  AAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCLIP 448


>ref|XP_002331405.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  386 bits (991), Expect = e-104
 Identities = 204/348 (58%), Positives = 233/348 (66%), Gaps = 13/348 (3%)
 Frame = -2

Query: 1130 LVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXXX 951
            L  V   D++GRWARVTF+I+LSYHG SFDGWQKQPGLNTVQGL+E+SLG+FVD      
Sbjct: 90   LEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQ 149

Query: 950  XXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAISV 771
                  P+EGCA VAGRTDKGV+AL+QVCSFYTWRKD+K  +IEDAIN  APGK+R  S+
Sbjct: 150  LKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESI 209

Query: 770  SQVSREFHPNFSAKWRHYFYIFPFND-------------ENVDEASQCKKNVLDSDVSGD 630
            S+VSR FHPNFSAKWR Y YIFP ND             EN      C+K          
Sbjct: 210  SEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQ--------R 261

Query: 629  GQCGEHFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTK 450
             +CGE   EEN  + I   D+ E +   KP SF V RVNQLLQQLEGKLLS++MFARDTK
Sbjct: 262  NECGELASEENVENSIIS-DEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTK 320

Query: 449  ASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXX 270
            ASRN+GPPTECF++HARA E  L S       R MCVEL+ANRFLRKMVRVLV       
Sbjct: 321  ASRNVGPPTECFLYHARATETRLPSPDHEKGIRVMCVELIANRFLRKMVRVLVATSVREA 380

Query: 269  XXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLIP 126
                   ALLKLMD            PDGLCLVDVGYTEF+ ++CLIP
Sbjct: 381  AAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYTEFDPRNCLIP 428


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 443

 Score =  384 bits (986), Expect = e-104
 Identities = 206/351 (58%), Positives = 238/351 (67%), Gaps = 5/351 (1%)
 Frame = -2

Query: 1163 AEVVEDCGKPELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSL 984
            A++ ED  K EL      DR GRWARV F+I LSYHG SFDGWQKQPGLNTVQGL+E+SL
Sbjct: 94   AKIQEDSNKTELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTVQGLVEKSL 153

Query: 983  GKFVDXXXXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAING 804
            GKFVD            P+EGCA+VAGRTDKGV+AL QVCSFYTWRKD++  +IEDAIN 
Sbjct: 154  GKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPHEIEDAINS 213

Query: 803  AAPGKIRAISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNV--LDSDVSGD 630
            +APGKIR ISVS+VSR FHPNFSAKWR Y YIFP ND    E S   +++  L S    D
Sbjct: 214  SAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGEDSEQSFDSEDLENLRSYEKYD 273

Query: 629  GQ---CGEHFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFAR 459
             Q   C E   EE+  +E+   D+ E     KP  F + RVNQLLQQLEGKLLS+++FAR
Sbjct: 274  EQRNGCAELTSEEHV-EELITSDKDELEGAKKPRIFSICRVNQLLQQLEGKLLSYKIFAR 332

Query: 458  DTKASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXX 279
            DTKASRN+GPPTECF++HARA EA L     G   + MCVELVANRFLRKMVRVLV    
Sbjct: 333  DTKASRNVGPPTECFIYHARATEARLPCPDHGEGRKVMCVELVANRFLRKMVRVLVATSI 392

Query: 278  XXXXXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLIP 126
                      ALLKLMD            PDGLCL DVGYTEF+ + C++P
Sbjct: 393  REAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFDAQICIVP 443


>gb|EPS66156.1| pseudouridine synthase, partial [Genlisea aurea]
          Length = 406

 Score =  382 bits (980), Expect = e-103
 Identities = 203/333 (60%), Positives = 238/333 (71%), Gaps = 1/333 (0%)
 Frame = -2

Query: 1124 SVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXXXXX 945
            S+P   RTGRWAR+TF+I+LSYHG SFDGWQKQPGLNTVQGLIE SLG F+D        
Sbjct: 93   SLPNEQRTGRWARLTFKIILSYHGYSFDGWQKQPGLNTVQGLIENSLGVFIDEKKALQLK 152

Query: 944  XXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAISVSQ 765
               LP +GCA+VAGRTDKGV+AL QVCSFYTWRK+++A DI +AIN +APGK+R  SVSQ
Sbjct: 153  EKNLPRDGCAVVAGRTDKGVSALGQVCSFYTWRKEVEAEDIMEAINDSAPGKLRVTSVSQ 212

Query: 764  VSREFHPNFSAKWRHYFYIFPFNDENVD-EASQCKKNVLDSDVSGDGQCGEHFGEENSGD 588
            VSREFHPNFSAKWR Y YIFP N E  D EA + +KN           CG++  ++ SG 
Sbjct: 213  VSREFHPNFSAKWRRYLYIFPLNHEYRDREAFKSEKNDF---------CGDNCLDDQSG- 262

Query: 587  EIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTKASRNIGPPTECFVF 408
                      +TG KP++FEVSRV+QLL  LEGKLLSFRMFARDTKASR+IGPPTECF+F
Sbjct: 263  ---------MQTGCKPLNFEVSRVSQLLLHLEGKLLSFRMFARDTKASRSIGPPTECFIF 313

Query: 407  HARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXXXXXXXXXALLKLMD 228
            HARAAEAYL  +++ T ++ MCVELVA+RFLRKMVRVLV               LL+LM 
Sbjct: 314  HARAAEAYLPCSEEETKSKIMCVELVADRFLRKMVRVLVATAIREAAAGADEDMLLQLMG 373

Query: 227  XXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
                        PDGLCLVDVGYTEF++K CLI
Sbjct: 374  ATCRRATAPPAPPDGLCLVDVGYTEFDRKVCLI 406


>ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-like [Solanum lycopersicum]
          Length = 436

 Score =  382 bits (980), Expect = e-103
 Identities = 202/351 (57%), Positives = 250/351 (71%), Gaps = 5/351 (1%)
 Frame = -2

Query: 1163 AEVVEDCGKPELVSVPAPDRT----GRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLI 996
            AE+ ED  K ELV++P  D++    GRWAR  F I+LSYHG SFDGWQKQP LNTVQGL+
Sbjct: 88   AEIREDHEKSELVNIPVKDKSRDKSGRWARANFMIVLSYHGGSFDGWQKQPDLNTVQGLV 147

Query: 995  ERSLGKFVDXXXXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIED 816
            ERSLG+FVD           LP+E CALVAGRTDKGV+A +QVCSFYTWRKD+K  D++ 
Sbjct: 148  ERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKGVSASQQVCSFYTWRKDVKIEDVKA 207

Query: 815  AINGAAPGKIRAISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDS-DV 639
            A++ AAPGKIR +S+++VSREFHPNFSAKWRHY YIFP  D+ + E    +  + DS +V
Sbjct: 208  ALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHYLYIFPI-DDVLGEKQGGQIWIDDSTNV 266

Query: 638  SGDGQCGEHFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFAR 459
                +C +   ++++ +EI++ +  +   GNKP  FEV +VN+LL QLEGKLLS++MFAR
Sbjct: 267  HQQNECDKSDVDKSNVNEINN-ENDKLVHGNKPTKFEVGKVNRLLGQLEGKLLSYKMFAR 325

Query: 458  DTKASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXX 279
            DTKASRNIGPPTECFVFHARA E  +   KDG+  +TMC+ELVANRFLRKMVRVLV    
Sbjct: 326  DTKASRNIGPPTECFVFHARAIETSIPCAKDGSHMKTMCIELVANRFLRKMVRVLVATAI 385

Query: 278  XXXXXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLIP 126
                      ALLKLMD            PDGLCLVDVGYT+++ + CLIP
Sbjct: 386  REAAAGADDDALLKLMDATCRRATAPPAPPDGLCLVDVGYTDYDIRHCLIP 436


>gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 446

 Score =  380 bits (977), Expect = e-103
 Identities = 204/347 (58%), Positives = 243/347 (70%)
 Frame = -2

Query: 1169 YGAEVVEDCGKPELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIER 990
            Y AE+ E     ++    + +R+GRWAR TF+++L YHG SFDGWQKQPGLNTVQGL+ER
Sbjct: 100  YDAEIPE-ISDDKVKLKKSEERSGRWARATFKVVLGYHGASFDGWQKQPGLNTVQGLVER 158

Query: 989  SLGKFVDXXXXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAI 810
            SLG+FVD           LP+E C +VAGRTDKGVTAL+QVCSFYTWRKDI   DIE+AI
Sbjct: 159  SLGRFVDEKKAQLLKDKCLPLEACTVVAGRTDKGVTALQQVCSFYTWRKDITCQDIEEAI 218

Query: 809  NGAAPGKIRAISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDSDVSGD 630
            N AA GK++A SVS+VSR FHPNFSAKWR Y YIFPFNDE  +E S      L++    +
Sbjct: 219  NNAALGKLKAKSVSEVSRVFHPNFSAKWRRYLYIFPFNDEEDEEQSNKNGENLETYEKIE 278

Query: 629  GQCGEHFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTK 450
              CGE + +E+ G+ I D D  E  +G KP SF VSRV+QLL+ LEGKLLS++MFARDTK
Sbjct: 279  SGCGE-WNDESFGNLIID-DSEELESGKKPSSFSVSRVDQLLRLLEGKLLSYKMFARDTK 336

Query: 449  ASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXX 270
            ASRN GPPTECF++HARAAEA L ++      + MCVELVANRFLRKMVRVLV       
Sbjct: 337  ASRNEGPPTECFIYHARAAEARLPTSDCTEGRKIMCVELVANRFLRKMVRVLVATSIREA 396

Query: 269  XXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
                   ALLKLMD            PDGLCLVDVGY+EF+  +CLI
Sbjct: 397  AAGAEEDALLKLMDATCRRATAPPAPPDGLCLVDVGYSEFKPNNCLI 443


>ref|XP_003532450.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 444

 Score =  375 bits (963), Expect = e-101
 Identities = 198/338 (58%), Positives = 228/338 (67%)
 Frame = -2

Query: 1142 GKPELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXX 963
            G  EL SV + DR+GRWAR TF+I+LSYHG SFDGWQKQPGLNTVQ ++E SLGKFVD  
Sbjct: 118  GSSELESVASEDRSGRWARTTFKIILSYHGGSFDGWQKQPGLNTVQSIVEGSLGKFVDEK 177

Query: 962  XXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIR 783
                     LPIEGCA+VAGRTDKGVT L+QVCSFYTW+KD+K  DIEDAIN AAPGK+R
Sbjct: 178  KTQLLKDKGLPIEGCAIVAGRTDKGVTGLQQVCSFYTWKKDVKPRDIEDAINHAAPGKLR 237

Query: 782  AISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDSDVSGDGQCGEHFGE 603
             ISVS+VSR FHPNFSAKWR Y YIFP  +               +D S D   GE +  
Sbjct: 238  VISVSEVSRVFHPNFSAKWRRYLYIFPLTNGGY------------TDQSSDN--GEFYDS 283

Query: 602  ENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTKASRNIGPPT 423
                +  D   + E     K  +F +S+VN+LL++LEGKLLS++MFARDTKASRN GPPT
Sbjct: 284  FKYNEIHDSASKDELENEKKSYAFSISKVNRLLRKLEGKLLSYKMFARDTKASRNDGPPT 343

Query: 422  ECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXXXXXXXXXAL 243
            ECFV+HARA E  L +T  G  T+ MCVELVANRFLRKMVRVLV              AL
Sbjct: 344  ECFVYHARAMEVKLPATDHGEETKVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDAL 403

Query: 242  LKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
            +KLMD            PDGLCLVDVGYTEFE + C I
Sbjct: 404  IKLMDATCRRATAPPAPPDGLCLVDVGYTEFEPQKCFI 441


>gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
          Length = 444

 Score =  372 bits (954), Expect = e-100
 Identities = 195/354 (55%), Positives = 241/354 (68%), Gaps = 7/354 (1%)
 Frame = -2

Query: 1169 YGAEV-VEDCGKPELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIE 993
            +G E  + D  +   VS    +R+GRW RVTF+I++SY+G +FDGWQKQPGLNTVQ ++E
Sbjct: 91   FGTETSIHDDSETVEVSDEKGERSGRWERVTFKIIISYNGGAFDGWQKQPGLNTVQEIVE 150

Query: 992  RSLGKFVDXXXXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDA 813
            RSLG+FVD            P+EGCA+VAGRTDKGV+A+ QVCSFYTWRKD+K  DIEDA
Sbjct: 151  RSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPWDIEDA 210

Query: 812  INGAAPGKIRAISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDSDVSG 633
            IN  APGK+R +SVS+VSR FHPNFSAKWRHY YIFP +++ +++ S   K  +++ +S 
Sbjct: 211  INSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCENKKEVENFIS- 269

Query: 632  DGQCGEH---FGEENSGDEIDDY---DQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFR 471
            DG   E    + E    + +++    D       NKP  F V RVNQLLQQLE KLLS++
Sbjct: 270  DGNYNEQRNGYLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQLERKLLSYK 329

Query: 470  MFARDTKASRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLV 291
            MFARDTKASRNIGPPTECF++HARAAEA +  +  G     MCVELVANRFLRKMVRVLV
Sbjct: 330  MFARDTKASRNIGPPTECFMYHARAAEARIPCSDHGEGREVMCVELVANRFLRKMVRVLV 389

Query: 290  XXXXXXXXXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
                          ALLKLM             PDGLCLVDVGYTEF+ ++CL+
Sbjct: 390  ATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDPQNCLL 443


>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  369 bits (946), Expect = 2e-99
 Identities = 199/340 (58%), Positives = 232/340 (68%), Gaps = 5/340 (1%)
 Frame = -2

Query: 1133 ELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXX 954
            EL      D+TGRWAR TF+I+LSY GNSFDGWQKQPGLNTVQGL+ERSLGKFVD     
Sbjct: 102  ELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQ 161

Query: 953  XXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAIS 774
                  LP+EGCALVAGRTDKGVTAL QVCSFYTWR D+K  DIED+IN AAPGK+R  S
Sbjct: 162  MLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSS 221

Query: 773  VSQVSREFHPNFSAKWRHYFYIFPFND-ENVDEASQCKKNVLDSD----VSGDGQCGEHF 609
            VSQVSR FHPNFSAKWR Y YI P ND EN++  S   +NV + +    V  +   GE  
Sbjct: 222  VSQVSRIFHPNFSAKWRRYLYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKC 281

Query: 608  GEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTKASRNIGP 429
             +    + +   +  E  + +KP +F ++RVNQLL++LEGKLLS++MFARDTKASRN GP
Sbjct: 282  VDGIHDNLVLSPNDEELVSADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGP 341

Query: 428  PTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXXXXXXXXX 249
            PTECFV+HARAAE  L   + G     MCVELVANRFLRKMVRVLV              
Sbjct: 342  PTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGED 401

Query: 248  ALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
            ALL+LMD            PDGL LVDVGYT+F+ + C I
Sbjct: 402  ALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDSQICFI 441


>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  369 bits (946), Expect = 2e-99
 Identities = 199/340 (58%), Positives = 232/340 (68%), Gaps = 5/340 (1%)
 Frame = -2

Query: 1133 ELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXX 954
            EL      D+TGRWAR TF+I+LSY GNSFDGWQKQPGLNTVQGL+ERSLGKFVD     
Sbjct: 102  ELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQGLVERSLGKFVDEKKAQ 161

Query: 953  XXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAIS 774
                  LP+EGCALVAGRTDKGVTAL QVCSFYTWR D+K  DIED+IN AAPGK+R  S
Sbjct: 162  MLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSS 221

Query: 773  VSQVSREFHPNFSAKWRHYFYIFPFND-ENVDEASQCKKNVLDSD----VSGDGQCGEHF 609
            VSQVSR FHPNFSAKWR Y YI P ND EN++  S   +NV + +    V  +   GE  
Sbjct: 222  VSQVSRIFHPNFSAKWRRYLYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKC 281

Query: 608  GEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTKASRNIGP 429
             +    + +   +  E  + +KP +F ++RVNQLL++LEGKLLS++MFARDTKASRN GP
Sbjct: 282  VDGIHDNLVLSPNDQELVSADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGP 341

Query: 428  PTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXXXXXXXXX 249
            PTECFV+HARAAE  L   + G     MCVELVANRFLRKMVRVLV              
Sbjct: 342  PTECFVYHARAAETRLPCLEQGVGRSVMCVELVANRFLRKMVRVLVATAIREAAAGAGED 401

Query: 248  ALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
            ALL+LMD            PDGL LVDVGYT+F+ + C I
Sbjct: 402  ALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDSQICFI 441


>gb|ESW32209.1| hypothetical protein PHAVU_002G302500g [Phaseolus vulgaris]
          Length = 440

 Score =  368 bits (945), Expect = 2e-99
 Identities = 199/335 (59%), Positives = 227/335 (67%)
 Frame = -2

Query: 1133 ELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXX 954
            EL SV + DR+GRWAR TF+I+LSYHG SFDGWQKQPGLNTVQG++E SLGKFVD     
Sbjct: 118  ELESVASEDRSGRWARRTFKIILSYHGGSFDGWQKQPGLNTVQGIVEASLGKFVDEKKTQ 177

Query: 953  XXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAIS 774
                  LPIEGCA+VAGRTDKGVT L+QVCSFYTW+KD+K  DIEDAIN AA GK+R IS
Sbjct: 178  LLKDKGLPIEGCAVVAGRTDKGVTGLQQVCSFYTWKKDVKPRDIEDAINQAALGKLRVIS 237

Query: 773  VSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDSDVSGDGQCGEHFGEENS 594
            VS+VSR FHPNFSAKWRHY YIFP  +   D   Q   N    D+S        + E + 
Sbjct: 238  VSEVSRVFHPNFSAKWRHYLYIFPLTNGYRD---QSNSNGESCDIS-------KYNEMHD 287

Query: 593  GDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTKASRNIGPPTECF 414
                D  +  E     K   F VS+VN LL++LEGKLLS++MFARDTKASRN GPPTECF
Sbjct: 288  SSSKDGIENQE-----KSYLFSVSKVNVLLRKLEGKLLSYKMFARDTKASRNDGPPTECF 342

Query: 413  VFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXXXXXXXXXALLKL 234
            V+HARA E  L +T  G  T+ MCVELVANRFLRKMVRVLV              AL+KL
Sbjct: 343  VYHARAMEVKLPTTDCGEETKVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALIKL 402

Query: 233  MDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
            MD            PDGLCLVDVGYTEF+ + C I
Sbjct: 403  MDATCRRATAPPAPPDGLCLVDVGYTEFDPQKCFI 437


>gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
          Length = 446

 Score =  368 bits (944), Expect = 3e-99
 Identities = 197/356 (55%), Positives = 242/356 (67%), Gaps = 9/356 (2%)
 Frame = -2

Query: 1169 YGAEV-VEDCGKPELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIE 993
            +G E  + D  +   VS    +R+GRW RVTF+I++SY+G +FDGWQKQPGLNTVQ ++E
Sbjct: 91   FGTETSIHDDSETVEVSDEKGERSGRWERVTFKIIISYNGGAFDGWQKQPGLNTVQEIVE 150

Query: 992  RSLGKFVDXXXXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDA 813
            RSLG+FVD            P+EGCA+VAGRTDKGV+A+ QVCSFYTWRKD+K  DIEDA
Sbjct: 151  RSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPWDIEDA 210

Query: 812  INGAAPGKIRAISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDSDVSG 633
            IN  APGK+R +SVS+VSR FHPNFSAKWRHY YIFP +++ +++ S   K  +++ +S 
Sbjct: 211  INSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSCENKKEVENFIS- 269

Query: 632  DGQCGEH---FGEENSGDEIDDY---DQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFR 471
            DG   E    + E    + +++    D       NKP  F V RVNQLLQQLE KLLS++
Sbjct: 270  DGNYNEQRNGYLENIRWENVENLIISDNMGLEAANKPTRFSVCRVNQLLQQLERKLLSYK 329

Query: 470  MFARDTKASRNIGPPTECFVFHARAAEAYL-LSTKD-GTSTRTMCVELVANRFLRKMVRV 297
            MFARDTKASRNIGPPTECF++HARAAEA +  S  D G     MCVELVANRFLRKMVRV
Sbjct: 330  MFARDTKASRNIGPPTECFMYHARAAEARIPCSVNDHGEGREVMCVELVANRFLRKMVRV 389

Query: 296  LVXXXXXXXXXXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
            LV              ALLKLM             PDGLCLVDVGYTEF+ ++CL+
Sbjct: 390  LVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVGYTEFDPQNCLL 445


>gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus persica]
          Length = 409

 Score =  368 bits (944), Expect = 3e-99
 Identities = 193/339 (56%), Positives = 236/339 (69%), Gaps = 9/339 (2%)
 Frame = -2

Query: 1118 PAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXXXXXXX 939
            P+ D+ GRWAR+TF+I++SYHG SFDGWQ+QPGLNTVQ ++E+SLGKFVD          
Sbjct: 74   PSQDKGGRWARLTFKIVVSYHGGSFDGWQRQPGLNTVQSVVEKSLGKFVDERKAQMLKDK 133

Query: 938  XLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAISVSQVS 759
             LP+EG ALVAGRTDKGVTA+ QVCSFYTWRKD+K+ DI DAIN AAPGK+R +SV++VS
Sbjct: 134  GLPLEGAALVAGRTDKGVTAVHQVCSFYTWRKDVKSQDITDAINSAAPGKLRVVSVTEVS 193

Query: 758  REFHPNFSAKWRHYFYIFPFND-ENVDEASQCKKNVLD--------SDVSGDGQCGEHFG 606
            R FHPNF+AKWRHY YIFPFND E++++++Q  +N  +           +G  QC     
Sbjct: 194  RAFHPNFTAKWRHYLYIFPFNDEEDMEQSNQSGENAQNFKSLENYHEHKNGCDQC----N 249

Query: 605  EENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTKASRNIGPP 426
            E N G+ +   +  E     KP  F VSRVNQLLQ+LEGKLLS++MFARDTK SRN GPP
Sbjct: 250  EANVGNLV--INDNEDLETLKPREFTVSRVNQLLQKLEGKLLSYKMFARDTKPSRNEGPP 307

Query: 425  TECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXXXXXXXXXA 246
            TECF++HARA E+ L  ++     R MC+ELVANRFLR+MVRVLV              A
Sbjct: 308  TECFLYHARAKESKLPCSEHEKGRRVMCIELVANRFLRRMVRVLVATSIREAAAGADEDA 367

Query: 245  LLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
            LLKLMD            PDGLCLVDVGY EF+ + CLI
Sbjct: 368  LLKLMDATCRRATAPPAPPDGLCLVDVGYEEFDPQDCLI 406


>ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
            gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase A
            [Medicago truncatula]
          Length = 400

 Score =  361 bits (927), Expect = 3e-97
 Identities = 195/335 (58%), Positives = 225/335 (67%)
 Frame = -2

Query: 1133 ELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXX 954
            E  S  + DR+G+WAR  F+ILLSYHG SFDGWQKQP LNTVQ ++E SLGKFVD     
Sbjct: 77   EFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEVSLGKFVDENKTQ 136

Query: 953  XXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAIS 774
                  LPI+GCA VAGRTDKGVTAL+QVCSFYTW+KDIK  +IEDAIN AAPGK+R +S
Sbjct: 137  LLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLRVVS 196

Query: 773  VSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDSDVSGDGQCGEHFGEENS 594
            V +VSR FHPNFSAKWR Y YIFP  D    + S            G+G+  + F     
Sbjct: 197  VYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQS-----------GGNGESCDSFIYNEI 245

Query: 593  GDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTKASRNIGPPTECF 414
             D  D  D+ E+   NK   F V +VN+LLQ+LEGK+LS++MFARDTKASRN GPPTECF
Sbjct: 246  CDS-DSKDELEKE--NKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECF 302

Query: 413  VFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXXXXXXXXXALLKL 234
            V HARA EA L  T++G  TR MC+ELVANRFLRKMVRVLV              ALLKL
Sbjct: 303  VHHARAMEAKLPITENGEETRVMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLKL 362

Query: 233  MDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
            MD            PDGLCLVDVGY EFE++ C I
Sbjct: 363  MDATCRRATAPPAPPDGLCLVDVGYAEFEREKCFI 397


>ref|XP_004503558.1| PREDICTED: tRNA pseudouridine synthase A-like [Cicer arietinum]
          Length = 422

 Score =  360 bits (924), Expect = 6e-97
 Identities = 198/346 (57%), Positives = 224/346 (64%)
 Frame = -2

Query: 1166 GAEVVEDCGKPELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERS 987
            G  V+ D  K EL    + DR GRWAR+ F+I+LSYHG SFDGWQKQP LNTVQ ++E S
Sbjct: 91   GISVLSD--KTELEKGVSKDRGGRWARINFKIVLSYHGESFDGWQKQPSLNTVQSVVEAS 148

Query: 986  LGKFVDXXXXXXXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAIN 807
            LGKFVD           LPIEGCA VAGRTDKGVTAL+QVCSFYTW+KDI   DIEDAIN
Sbjct: 149  LGKFVDEMKTQLLKEKGLPIEGCASVAGRTDKGVTALQQVCSFYTWKKDINPRDIEDAIN 208

Query: 806  GAAPGKIRAISVSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDSDVSGDG 627
              APGK+R ISV +VSR FHPNFSAKWR Y YIFP  DE             D D SG  
Sbjct: 209  DGAPGKLRVISVHEVSRAFHPNFSAKWRRYLYIFPLTDEG------------DKDQSGSN 256

Query: 626  QCGEHFGEENSGDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTKA 447
            +  E        +  D   + E     K   F V +VN+LLQ+LEGKLLS++MFARDTKA
Sbjct: 257  E--ESCDRFIYNEVCDSVSKDELENEMKSYVFSVRKVNRLLQKLEGKLLSYKMFARDTKA 314

Query: 446  SRNIGPPTECFVFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXXX 267
            SRN GPPTECFV+HARA EA L +T +G   R MC+ELVANRFLRKMVRVLV        
Sbjct: 315  SRNDGPPTECFVYHARAMEARLPTTDNG-EARVMCIELVANRFLRKMVRVLVATTIREAA 373

Query: 266  XXXXXXALLKLMDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
                  ALL+LMD            PDGLCLVDVGY EF++K C I
Sbjct: 374  AGAEDDALLRLMDATCRRATAPPAPPDGLCLVDVGYAEFDQKKCFI 419


>gb|AFK45334.1| unknown [Medicago truncatula]
          Length = 400

 Score =  357 bits (915), Expect = 7e-96
 Identities = 194/335 (57%), Positives = 224/335 (66%)
 Frame = -2

Query: 1133 ELVSVPAPDRTGRWARVTFRILLSYHGNSFDGWQKQPGLNTVQGLIERSLGKFVDXXXXX 954
            E  S  + DR+G+WAR  F+ILLSYHG SFDGWQKQP LNTVQ ++E SLGKFVD     
Sbjct: 77   EFQSGASKDRSGKWARFNFKILLSYHGGSFDGWQKQPNLNTVQSVVEVSLGKFVDENKTQ 136

Query: 953  XXXXXXLPIEGCALVAGRTDKGVTALEQVCSFYTWRKDIKAMDIEDAINGAAPGKIRAIS 774
                  LPI+GCA VAGRTDKGVTAL+QVCSFYTW+KDIK  +IEDAIN AAPGK+R +S
Sbjct: 137  LLKDKGLPIQGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLRVVS 196

Query: 773  VSQVSREFHPNFSAKWRHYFYIFPFNDENVDEASQCKKNVLDSDVSGDGQCGEHFGEENS 594
            V +VSR FHPNFSAKWR Y YIFP  D    + S            G+G+  + F     
Sbjct: 197  VYEVSRAFHPNFSAKWRRYLYIFPLTDGQDKDQS-----------GGNGESCDSFIYNEI 245

Query: 593  GDEIDDYDQTEQRTGNKPISFEVSRVNQLLQQLEGKLLSFRMFARDTKASRNIGPPTECF 414
             D  D  D+ E+   NK   F V +VN+LLQ+LEGK+LS++MFARDTKASRN GPPTECF
Sbjct: 246  CDS-DSKDELEKE--NKSYVFGVRKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECF 302

Query: 413  VFHARAAEAYLLSTKDGTSTRTMCVELVANRFLRKMVRVLVXXXXXXXXXXXXXXALLKL 234
            V HARA EA L  T++G  TR MC+ELVANRFLRKMVRVLV              ALLKL
Sbjct: 303  VHHARAMEAKLPITENGEETRVMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLKL 362

Query: 233  MDXXXXXXXXXXXXPDGLCLVDVGYTEFEKKSCLI 129
            MD            PDGL LVDVGY EFE++ C I
Sbjct: 363  MDATCRRATAPPAPPDGLGLVDVGYAEFEREKCFI 397