BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00013550
         (400 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     116   3e-24
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi...   110   2e-22
ref|NP_063998.1| orf764 gene product (mitochondrion) [Beta vulga...   110   2e-22
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                110   2e-22
dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris]                110   2e-22
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             108   7e-22
gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' part...   105   8e-21
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]               104   1e-20
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...   103   3e-20
ref|XP_004301673.1| PREDICTED: uncharacterized protein LOC101299...   101   9e-20
gb|ABD63162.1| RNase H family protein [Asparagus officinalis]         101   1e-19
emb|CAN62410.1| hypothetical protein VITISV_018838 [Vitis vinifera]   101   1e-19
ref|XP_004963950.1| PREDICTED: uncharacterized protein LOC101783...   100   2e-19
ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607...    99   4e-19
emb|CAN70508.1| hypothetical protein VITISV_027902 [Vitis vinifera]    99   4e-19
emb|CAN76248.1| hypothetical protein VITISV_015055 [Vitis vinifera]    99   4e-19
gb|ABA93786.1| retrotransposon protein, putative, Ty3-gypsy subc...    99   6e-19
gb|ABA94207.1| retrotransposon protein, putative, unclassified [...    99   6e-19
gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsi...    99   6e-19
gb|ABA95343.1| retrotransposon protein, putative, Ty3-gypsy subc...    99   8e-19

>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  116 bits (291), Expect = 3e-24
 Identities = 58/134 (43%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            PGVLW+ RTT + +TG +PF LVYGSEA++P+E      R A + P  N           
Sbjct: 1152 PGVLWSLRTTEKEATGYSPFHLVYGSEAVLPIEAVVPTFRTATFNPVENEEGLKASLDLV 1211

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEVSKH---VGKLEANWEGP 351
               RD A + +   + RM+ AYN RV +R  +VGDLVL+K   +      GK+  NWEGP
Sbjct: 1212 EESRDTARLNLAVYQNRMRRAYNHRVHKRDLRVGDLVLRKSTATNKGNIHGKMTTNWEGP 1271

Query: 352  FKVIEVLKRGTYRL 393
            +KV+E ++ GTYRL
Sbjct: 1272 YKVVEEMRPGTYRL 1285


>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  110 bits (275), Expect = 2e-22
 Identities = 64/136 (47%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
 Frame = +1

Query: 7    VLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLR--VARYEPESNXXXXXXXXXXX 180
            VLWAYRTT R STGETPFSLVYG +A+VP E+    LR   A    + N           
Sbjct: 1131 VLWAYRTTPRRSTGETPFSLVYGMKAVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTI 1190

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEVSKH---VGKLEANWEGP 351
              +RD+A IQIQ  +      YN +V+ R F VGD VLK+V  +K     GKL  NWEGP
Sbjct: 1191 NERRDQALIQIQNYQHAAARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGP 1250

Query: 352  FKVIEVLKRGTYRLEN 399
            + V EV++ G YRL++
Sbjct: 1251 YIVTEVVRNGVYRLKD 1266


>ref|NP_063998.1| orf764 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
            gi|323435157|ref|YP_004222375.1| hypothetical protein
            BevumaM_p142 [Beta vulgaris subsp. maritima]
            gi|346683249|ref|YP_004842181.1| hypothetical protein
            BemaM_p137 [Beta macrocarpa] gi|9049300|dbj|BAA99310.1|
            orf764 [Beta vulgaris subsp. vulgaris]
            gi|317905608|emb|CBJ14014.1| hypothetical protein [Beta
            vulgaris subsp. maritima] gi|319439890|emb|CBJ17590.1|
            hypothetical protein [Beta vulgaris subsp. maritima]
            gi|320148045|emb|CBJ20708.1| hypothetical protein [Beta
            vulgaris subsp. maritima] gi|345500167|emb|CBX24986.1|
            hypothetical protein [Beta macrocarpa]
            gi|384977907|emb|CBL54131.1| hypothetical protein
            (mitochondrion) [Beta vulgaris subsp. maritima]
          Length = 764

 Score =  110 bits (274), Expect = 2e-22
 Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            P VLWA RTT + +TG++PFSL +G+EA+VP+E+G    RV  Y+PE N           
Sbjct: 609  PEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSFRVQHYDPEVNEQLMREALDQL 668

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKK---VEVSKHVGKLEANWEGP 351
               R +A +++ A K RM   YN+RV+ R    GDLVL++   V      GK  ANWEGP
Sbjct: 669  PEMRLQAALKLAAQKNRMSRIYNRRVRHRPLTEGDLVLRRTAAVGKGNVHGKFTANWEGP 728

Query: 352  FKVIEVLKRGTYRL 393
            +++ E +  G+Y+L
Sbjct: 729  YQICEQVAPGSYKL 742


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  110 bits (274), Expect = 2e-22
 Identities = 57/136 (41%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            P VLWAYRTT R STGETPFS+ YG EA++P+E+G   L+  +Y   +N           
Sbjct: 951  PHVLWAYRTTPRRSTGETPFSMTYGMEAVIPLELGFPTLKFDQYNNVTNHDMLHDSLNTI 1010

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEVSKH---VGKLEANWEGP 351
              +R+ A +++ + + ++K AY+K V+ R    GDLVL+KV  +      GKL  NWEGP
Sbjct: 1011 EERREVASVKMGSYQQKLKQAYDKGVKSRPLVPGDLVLRKVVGTARNPAWGKLGTNWEGP 1070

Query: 352  FKVIEVLKRGTYRLEN 399
            +++  V   G YRLE+
Sbjct: 1071 YRITSVAGIGAYRLED 1086


>dbj|BAD66751.1| orf764 [Beta vulgaris subsp. vulgaris]
          Length = 764

 Score =  110 bits (274), Expect = 2e-22
 Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            P VLWA RTT + +TG++PFSL +G+EA+VP+E+G    RV  Y+PE N           
Sbjct: 609  PEVLWANRTTEKGATGKSPFSLAFGAEAVVPIEVGLPSFRVQHYDPEVNEQLMREALDQL 668

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKK---VEVSKHVGKLEANWEGP 351
               R +A +++ A K RM   YN+RV+ R    GDLVL++   V      GK  ANWEGP
Sbjct: 669  PEMRLQAALKLAAQKNRMSRIYNRRVRHRPLTEGDLVLRRTAAVGKGNVHGKFTANWEGP 728

Query: 352  FKVIEVLKRGTYRL 393
            +++ E +  G+Y+L
Sbjct: 729  YQICEQVAPGSYKL 742


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  108 bits (270), Expect = 7e-22
 Identities = 62/136 (45%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
 Frame = +1

Query: 7    VLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLR--VARYEPESNXXXXXXXXXXX 180
            VLWAYRTT R  TGETPFSLVYG EA+VP E+    LR   A    E N           
Sbjct: 948  VLWAYRTTPRRPTGETPFSLVYGMEAVVPAELNVPGLRRTEAPLNEEENSAMLNDSLDTI 1007

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEVSKH---VGKLEANWEGP 351
              +RD+A I+IQ  +      YN +V+ R F VGD VL++V  +K     GKL  NWEGP
Sbjct: 1008 NERRDQALIRIQNYQQAAARYYNSKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGP 1067

Query: 352  FKVIEVLKRGTYRLEN 399
            + + EV++ G YRL++
Sbjct: 1068 YIITEVVRNGVYRLKD 1083


>gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' partial [Arabidopsis thaliana]
          Length = 177

 Score =  105 bits (261), Expect = 8e-21
 Identities = 60/136 (44%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
 Frame = +1

Query: 7   VLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLR--VARYEPESNXXXXXXXXXXX 180
           VLWAYRTTSR STGETPFSLVYG EA+VP ++    LR   A    + N           
Sbjct: 22  VLWAYRTTSRRSTGETPFSLVYGMEAVVPAKLNVPGLRRTEAPLNEDENSAMLDDSLDTI 81

Query: 181 XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEVSKH---VGKLEANWEGP 351
             +RD+A I+IQ  +      YN ++  R F +GD VLK+V  +K     GKL  NWEGP
Sbjct: 82  NERRDQALIRIQNYQQAAARYYNSKINSRPFFMGDYVLKRVFDNKKEEGAGKLGINWEGP 141

Query: 352 FKVIEVLKRGTYRLEN 399
           + V EV++ G + L++
Sbjct: 142 YIVTEVVRNGVFGLKD 157


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score =  104 bits (260), Expect = 1e-20
 Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
 Frame = +1

Query: 7    VLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXXXX 186
            VLWAYR T +++T ETP+SL YG+EA++PVEIGE  LR    + + N             
Sbjct: 1708 VLWAYRCTPQSTTQETPYSLTYGTEAMIPVEIGEPSLRRQTLDLDLNKESLLVGLDLINE 1767

Query: 187  KRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLK-KVEVSKHVGKLEANWEGPFKVI 363
             RDK  I+ +A K R    YN +V+ RS+Q GDLV + + +  K  GK  +NWEGPF++ 
Sbjct: 1768 LRDKCKIREEACKIRAARRYNSKVKPRSYQKGDLVWRMRSDARKDGGKFSSNWEGPFRIS 1827

Query: 364  EVLKRGTYRLE 396
                 G Y LE
Sbjct: 1828 NTATGGAYYLE 1838


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score =  103 bits (256), Expect = 3e-20
 Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
 Frame = +1

Query: 4    GVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARY--EPESNXXXXXXXXXX 177
            GVLW+YRTT R ST  TPFSL YG EA+ P E G   +R +    +P  N          
Sbjct: 1631 GVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDNLDT 1690

Query: 178  XXXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKV---EVSKHVGKLEANWEG 348
               +RD+A ++IQ  +      YNK+V+ R F  GDLVL+KV    V +  GKL A+WEG
Sbjct: 1691 LEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLGAHWEG 1750

Query: 349  PFKVIEVLKRGTYRL 393
            P+ + +V+K G Y L
Sbjct: 1751 PYLISKVVKPGVYEL 1765


>ref|XP_004301673.1| PREDICTED: uncharacterized protein LOC101299390 [Fragaria vesca
            subsp. vesca]
          Length = 2533

 Score =  101 bits (252), Expect = 9e-20
 Identities = 56/139 (40%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARY--EPESNXXXXXXXXX 174
            P  LWAYRTT RT+TG TP+SLVYGSEA++P+EI     R+A     P+ N         
Sbjct: 2375 PEALWAYRTTVRTATGCTPYSLVYGSEAVLPLEIQLPSPRIATQLANPDENARVRLAELE 2434

Query: 175  XXXXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKK----VEVSKHVGKLEANW 342
                KR     +++  + ++  A+NK+V+ RSF+VGDLVL      +   +  GK E  W
Sbjct: 2435 ALDEKRLVVQQKLEIYQAQVAGAFNKKVKSRSFKVGDLVLTLRRPIIVTRQSKGKFEPKW 2494

Query: 343  EGPFKVIEVLKRGTYRLEN 399
            EGP+ + +V  +G Y L N
Sbjct: 2495 EGPYVITKVFSKGAYELSN 2513


>gb|ABD63162.1| RNase H family protein [Asparagus officinalis]
          Length = 1189

 Score =  101 bits (251), Expect = 1e-19
 Identities = 63/137 (45%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
 Frame = +1

Query: 10   LWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVA---RYEPESNXXXXXXXXXXX 180
            LWAYRTT RTST  TPFSLVYG EA++P+EI    LRVA       E             
Sbjct: 1033 LWAYRTTVRTSTRATPFSLVYGCEAVLPLEIQIPSLRVAITTGLTEEEKHQRRLQELEAL 1092

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKK----VEVSKHVGKLEANWEG 348
              KR +A  QI+  + R+  AYNK+V+ER F+ GDLVL      V   K  GK    WEG
Sbjct: 1093 DDKRLQAQQQIELYQARISKAYNKKVKERIFKKGDLVLANKRPMVMTHKTRGKFNPKWEG 1152

Query: 349  PFKVIEVLKRGTYRLEN 399
            PF +  V   G YRL N
Sbjct: 1153 PFVIESVYSNGAYRLIN 1169


>emb|CAN62410.1| hypothetical protein VITISV_018838 [Vitis vinifera]
          Length = 890

 Score =  101 bits (251), Expect = 1e-19
 Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            PG LWAYRTT    TG TPF+L YG +A++P EIG   +R    + +             
Sbjct: 735  PGALWAYRTTPERPTGNTPFALAYGMDAVIPTEIGLPTIRTEAAKQDDANTDLGRNLGWA 794

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKV---EVSKHVGKLEANWEGP 351
               R+ A I++   + R    YN++V+ RSF+ G LVL+KV      K  GK +ANWEGP
Sbjct: 795  DEVRESAAIRMANYQQRASAHYNRKVRPRSFKNGTLVLRKVFENTAEKEAGKFQANWEGP 854

Query: 352  FKVIEVLKRGTYRLEN 399
            + + +  + G Y L+N
Sbjct: 855  YIISKSSENGVYHLQN 870


>ref|XP_004963950.1| PREDICTED: uncharacterized protein LOC101783098, partial [Setaria
            italica]
          Length = 1549

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/131 (38%), Positives = 77/131 (58%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            P VLW+ RTT   +TG TPF ++YGSEAI+P ++     RV  Y+ + N           
Sbjct: 1397 PAVLWSLRTTPSRATGFTPFFMIYGSEAILPTDLEYGSPRVKAYDEQGNQASLEDAQDQL 1456

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEVSKHVGKLEANWEGPFKV 360
               RD A +     +  ++  +++++Q R+F VGDLVL+ V+ ++   KL   WEGPF +
Sbjct: 1457 DEARDVALLHSAKYQQALRRYHSRKIQGRAFNVGDLVLRLVQDNRDQHKLTPPWEGPFII 1516

Query: 361  IEVLKRGTYRL 393
            ++VL+ GTYRL
Sbjct: 1517 VQVLQPGTYRL 1527


>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
          Length = 1866

 Score = 99.4 bits (246), Expect = 4e-19
 Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
 Frame = +1

Query: 4    GVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXXX 183
            GVLWAYRTT +T+TGETPF+L +G EA++P EIG    R   +  E N            
Sbjct: 1712 GVLWAYRTTHKTATGETPFALAFGHEAVIPAEIGVGTHRTEYFIEEQNDEQICLSLDLLE 1771

Query: 184  XKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEV---SKHVGKLEANWEGPF 354
             +R+ A  ++   + R+   YNK V+ R F+ GD VL++V     + + G L   WEGP+
Sbjct: 1772 ERREGAAQKVAQCQQRVMRYYNKNVRVRQFRAGDWVLRRVNQNTRNPNHGALGPKWEGPY 1831

Query: 355  KVIEVLKRGTYRL 393
            +VI     G Y+L
Sbjct: 1832 RVIRATGPGAYKL 1844


>emb|CAN70508.1| hypothetical protein VITISV_027902 [Vitis vinifera]
          Length = 932

 Score = 99.4 bits (246), Expect = 4e-19
 Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            PGVLWAYRTT    TG TPF+L YG +A++P EIG   +R    E E             
Sbjct: 777  PGVLWAYRTTPGRPTGNTPFALTYGMDAVIPTEIGLPTIRTDAAEQEDANTELGRNLDWA 836

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKV---EVSKHVGKLEANWEGP 351
               R+ A I++   + R    YN++V+ R+F+ G LVL+KV    V    GK +ANWEGP
Sbjct: 837  DEIRESAAIRMTDYQQRASAHYNRKVRPRNFKNGTLVLRKVFENTVEVGAGKFQANWEGP 896

Query: 352  FKVIEVLKRGTYRLE 396
            + V +  + G Y L+
Sbjct: 897  YIVSKANENGAYHLQ 911


>emb|CAN76248.1| hypothetical protein VITISV_015055 [Vitis vinifera]
          Length = 1027

 Score = 99.4 bits (246), Expect = 4e-19
 Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            PGVLWAYRTT    TG TPF+L YG +A++P EIG   +R    E E             
Sbjct: 872  PGVLWAYRTTPGRPTGNTPFALTYGMDAVIPTEIGLPTIRTDAAEQEDANTELGRNLDWA 931

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKV---EVSKHVGKLEANWEGP 351
               R+ A I++   + R    YN++V+ R+F+ G LVL+KV    V    GK +ANWEGP
Sbjct: 932  DEIRESAAIRMADYQQRASAHYNRKVRPRNFKNGTLVLRKVFENTVEVGAGKFQANWEGP 991

Query: 352  FKVIEVLKRGTYRLE 396
            + V +  + G Y L+
Sbjct: 992  YIVSKANENGAYHLQ 1006


>gb|ABA93786.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1498

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 50/133 (37%), Positives = 77/133 (57%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            P VLW+ RTT   +TG++PF LVYG+EA++P E+    LR   +  E             
Sbjct: 1346 PSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFNEEGYEEGRVDDINRL 1405

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEVSKHVGKLEANWEGPFKV 360
               R+ A IQ    +  ++  +N+ V+ R+F VGDLVL+K++ ++   KL   WEGPF +
Sbjct: 1406 EEAREAALIQSTRYQQGLRRYHNRNVRSRAFLVGDLVLRKIQTTQDRHKLSPLWEGPFII 1465

Query: 361  IEVLKRGTYRLEN 399
             EV + G+YRL++
Sbjct: 1466 AEVTRPGSYRLKH 1478


>gb|ABA94207.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 277

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 51/131 (38%), Positives = 77/131 (58%)
 Frame = +1

Query: 1   PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
           P VLWA RTT   +TGETPF LVYG+EA++P+E+     RVA Y+  +            
Sbjct: 125 PAVLWANRTTPSRATGETPFFLVYGAEAVLPLELSLRSPRVALYDEANQDDLRRDDLDYL 184

Query: 181 XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEVSKHVGKLEANWEGPFKV 360
             +R +A ++    +  ++  + + ++ RS QVGDLVL++V+    + KL   WEGP+KV
Sbjct: 185 EERRRRAALRTARYQQALRRYHQRHIRARSLQVGDLVLRRVQSRLGLSKLSPMWEGPYKV 244

Query: 361 IEVLKRGTYRL 393
           I V + G+ RL
Sbjct: 245 IGVPRLGSVRL 255


>gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1329

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 56/137 (40%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
 Frame = +1

Query: 7    VLWAYRTTSRTSTGETPFSLVYGSEAIVPVEI---GETLLRVARYEPESNXXXXXXXXXX 177
            VLWA RTT R +T ETPFSL+YG EA++P EI       +R  + E E+N          
Sbjct: 1174 VLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQNETENN-EMIIDVIDT 1232

Query: 178  XXXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVE---VSKHVGKLEANWEG 348
               +R++A  ++Q         YN  V+ RSF+VG LVL++V+     K  GKL  +WEG
Sbjct: 1233 IDERRNRALARMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLGISWEG 1292

Query: 349  PFKVIEVLKRGTYRLEN 399
            P+K+  V++ G YRL N
Sbjct: 1293 PYKITHVVRNGVYRLIN 1309


>gb|ABA95343.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 2289

 Score = 98.6 bits (244), Expect = 8e-19
 Identities = 51/132 (38%), Positives = 76/132 (57%)
 Frame = +1

Query: 1    PGVLWAYRTTSRTSTGETPFSLVYGSEAIVPVEIGETLLRVARYEPESNXXXXXXXXXXX 180
            P VLW+ RTTS  +TG++PF LVYG+EA++P E+    LR   +  E             
Sbjct: 2137 PSVLWSLRTTSSRATGQSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEEDRVDDLHRL 2196

Query: 181  XXKRDKAFIQIQAAKGRMKNAYNKRVQERSFQVGDLVLKKVEVSKHVGKLEANWEGPFKV 360
               R+ A IQ       ++  +N+ V+ R+F VGDLVL+K++ ++   KL   WEGPF +
Sbjct: 2197 EEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTRDRHKLSPLWEGPFII 2256

Query: 361  IEVLKRGTYRLE 396
             EV + G+YRL+
Sbjct: 2257 SEVTRPGSYRLK 2268


  Database: ./nr
    Posted date:  Mar 5, 2014 11:37 AM
  Number of letters in database: 13,225,080,153
  Number of sequences in database:  37,332,560
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 37332560
Number of Hits to DB: 350,797,097,497,350
Number of extensions: 1369987498
Number of successful extensions: -1060824353
Number of sequences better than 1.0e-05: 80543713
Number of HSP's gapped: -1374639941
Number of HSP's successfully gapped: 110390781
Length of database: 13,225,080,153
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)