BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00013114
         (2622 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synt...   880   0.0  
ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synt...   875   0.0  
ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   875   0.0  
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              863   0.0  
gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [...   854   0.0  
ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Popu...   851   0.0  
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   851   0.0  
gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus no...   848   0.0  
ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synt...   840   0.0  
ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synt...   837   0.0  
gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus pe...   834   0.0  
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   830   0.0  
gb|EOY11113.1| Pseudouridine synthase family protein, putative i...   829   0.0  
ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synt...   827   0.0  
ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citr...   816   0.0  
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   807   0.0  
ref|XP_006577278.1| PREDICTED: multisubstrate pseudouridine synt...   792   0.0  
ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Caps...   784   0.0  
ref|XP_004494684.1| PREDICTED: multisubstrate pseudouridine synt...   783   0.0  
ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata...   781   0.0  

>ref|XP_006347775.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            tuberosum]
          Length = 685

 Score =  880 bits (2273), Expect = 0.0
 Identities = 454/689 (65%), Positives = 541/689 (78%), Gaps = 8/689 (1%)
 Frame = -2

Query: 2495 MTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKK 2316
            M +++ESDVGI CYIS+LPGFRGILKQRYSDFIVNEVDLD NVVHLT LEAP E +E K 
Sbjct: 1    MKTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLTLLEAPKECSENKD 60

Query: 2315 EKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRT 2136
              I+D L++ Y +E+ESFR+LAG+SD +KLK F+D++  G + +DESIVLSPSSDKSHRT
Sbjct: 61   VNISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 2135 AVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXKPYDCRGS 1956
            A+HNFFKERL FLVTDT+DG +  SKCVRVRL                    K YD RGS
Sbjct: 121  AIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRSSRKRKDRDDKRYDSRGS 180

Query: 1955 DSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 1776
            DSWP  +GKFLRFHL+KENKDTQEAL ++ KMLG+Q RSFGFAGTKDKR+VSTQRVTVFK
Sbjct: 181  DSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFK 240

Query: 1775 QRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATAL 1596
            Q+A+KLAALN+RLIGIKVG+FC+V EGL+LGQL GNRFTITLR + AE+EDII+ASA AL
Sbjct: 241  QQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVAL 300

Query: 1595 AKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRKIREYYKE 1416
             K+GFINYFGLQRFGSSS+ THLIGAALL GEWKAAV +ILDPREGEK+    +REYYKE
Sbjct: 301  GKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNAISTVREYYKE 360

Query: 1415 SGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAA 1236
            SGD++GTLRQLPR++VAE+AIL C ++ PGNYLQAL AIPRTLRMM+VHSYQSYLWNHAA
Sbjct: 361  SGDIDGTLRQLPRYLVAEKAILQCLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1235 SMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDNGNDTQVDCHLDDISITDLSE 1056
            SMR+QK+G  QVVLGDLVY KE+   KE  S     ED N N+     +LD+IS TDL E
Sbjct: 421  SMRVQKHGFDQVVLGDLVYSKEEYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 1055 VKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAH 876
             +++ VK I +ED+ +  Y IDD++LPLPGSR+ YP NDIGE+Y DLA+KD ISLTE+AH
Sbjct: 479  ERNIPVKVINEEDLKSGTYAIDDVLLPLPGSRVIYPSNDIGEVYCDLAQKDDISLTETAH 538

Query: 875  NSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFVRDSD 696
              KEFS+TNMTGAYRRVFQKPKDFEWELL+Y D  IPLAETD+D+I  ++S  + VR+ D
Sbjct: 539  KIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVI--ANSVKSKVREED 596

Query: 695  EKEQIKCQADCDNEIELVAG--------TGETKSDIQIEEESLAAASKTQESEMALKLSF 540
                 K +   D+    V G          +  ++  ++ E   +    +ES+MALKLSF
Sbjct: 597  PTNGSK-ELPADSSAISVGGDMLSGKVCEEKINNEAGMQSEKSQSGGNAEESQMALKLSF 655

Query: 539  TLPASCYATMAIRELLKTSTSVAFHKALN 453
            TLPASCYATMA+RELLKTSTSVAFHK+LN
Sbjct: 656  TLPASCYATMAVRELLKTSTSVAFHKSLN 684


>ref|XP_004230110.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Solanum
            lycopersicum]
          Length = 685

 Score =  875 bits (2262), Expect = 0.0
 Identities = 453/686 (66%), Positives = 539/686 (78%), Gaps = 5/686 (0%)
 Frame = -2

Query: 2495 MTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKK 2316
            M +++ESDVGI CYIS+LPGFRGILKQRYSDFIVNEVDLD NVVHL SLEAP E +E K 
Sbjct: 1    MKTMDESDVGISCYISNLPGFRGILKQRYSDFIVNEVDLDENVVHLNSLEAPKECSENKD 60

Query: 2315 EKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRT 2136
              I+D L++ Y +E+ESFR+LAG+SD +KLK F+D++  G + +DESIVLSPSSDKSHRT
Sbjct: 61   VNISDQLNRSYVTEIESFRSLAGNSDADKLKAFIDELNSGADVSDESIVLSPSSDKSHRT 120

Query: 2135 AVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXKPYDCRGS 1956
             +HNFFKERL FLVTDT+DG +  SKCVRVRL                    K YD RGS
Sbjct: 121  EIHNFFKERLKFLVTDTIDGVEDQSKCVRVRLNNDRNNGRGRYSRKRKDRNDKRYDSRGS 180

Query: 1955 DSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 1776
            DSWP  +GKFLRFHL+KENKDTQEAL ++ KMLG+Q RSFGFAGTKDKR+VSTQRVTVFK
Sbjct: 181  DSWPGHLGKFLRFHLFKENKDTQEALNVIAKMLGVQLRSFGFAGTKDKRAVSTQRVTVFK 240

Query: 1775 QRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATAL 1596
            Q+A+KLAALN+RLIGIKVG+FC+V EGL+LGQL GNRFTITLR + AE+EDII+ASA AL
Sbjct: 241  QQASKLAALNKRLIGIKVGDFCHVKEGLLLGQLYGNRFTITLRGVSAESEDIIKASAVAL 300

Query: 1595 AKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRKIREYYKE 1416
             K+GFINYFGLQRFGSSS+ THLIGAALL GEWKAAV +ILDPREGEK+    +REYYKE
Sbjct: 301  GKHGFINYFGLQRFGSSSVPTHLIGAALLRGEWKAAVSLILDPREGEKNTISTVREYYKE 360

Query: 1415 SGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAA 1236
            SGD++GTLRQLPR++VAE+AIL   ++ PGNYLQAL AIPRTLRMM+VHSYQSYLWNHAA
Sbjct: 361  SGDIDGTLRQLPRYLVAEKAILQSLKRSPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1235 SMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDNGNDTQVDCHLDDISITDLSE 1056
            SMR+QK+G  QVVLGDLVY KE    KE  S     ED N N+     +LD+IS TDL E
Sbjct: 421  SMRVQKHGFDQVVLGDLVYSKEDYKVKE--SFVAECEDVNDNNMDDYSNLDEISETDLPE 478

Query: 1055 VKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAH 876
             +++ VK I +ED+ +  YTIDD++LPL GSR+ YP NDIGE+Y DLA+KDGISLTE+AH
Sbjct: 479  ERNIPVKVINEEDLKSGTYTIDDVLLPLSGSRVIYPSNDIGEVYRDLAQKDGISLTETAH 538

Query: 875  NSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTF--VRD 702
              KEFS+TNMTGAYRRVFQKPKDFEWELL+Y D  IPLAETD+D+I+KS        V  
Sbjct: 539  KIKEFSITNMTGAYRRVFQKPKDFEWELLSYTDGTIPLAETDFDVIAKSVKSKVIEEVPS 598

Query: 701  SDEKEQIKCQADCDNEIELVAG--TGET-KSDIQIEEESLAAASKTQESEMALKLSFTLP 531
            +  KE     +      ++++G    ET  ++  ++ E   +    +ES+MALKLSFTLP
Sbjct: 599  NGSKELPADSSAISVGGDMLSGKVCEETINNEAGMQSEKSQSGGNAEESQMALKLSFTLP 658

Query: 530  ASCYATMAIRELLKTSTSVAFHKALN 453
            ASCYATMA+RELLKTSTSVAFHK+LN
Sbjct: 659  ASCYATMAVRELLKTSTSVAFHKSLN 684


>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  875 bits (2262), Expect = 0.0
 Identities = 453/692 (65%), Positives = 525/692 (75%), Gaps = 11/692 (1%)
 Frame = -2

Query: 2495 MTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKK 2316
            M  +EESDVGI  YIS LPGFRGILKQRY DFIVNEVD DGNVVHLTSL+AP E+ E+ +
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 2315 EKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRT 2136
             KI+D  +K Y+SE+E FR+L GDSDVE LK  +DQ+  G+      IVLS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 2135 AVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXKPYDCRGS 1956
            AVHNFFKE L FLVTDT+DGPD+ SKC+RVRL                    KP+D RGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 1955 DSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 1776
            D+W + +GKFLRFHLYKENKDTQEA+GL+GKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 1775 QRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATAL 1596
            Q AN+LAALNERLIGIKVG+FC+V EGLVLGQL GNRFTITLR + A++E+ I+ASA AL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 1595 AKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRKIREYYKE 1416
             + GFINYFGLQRFGS S+ THLIGAALL GEW+ AV +ILDPREGE+D  RK REYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGERDAIRKAREYYKE 360

Query: 1415 SGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAA 1236
            S D+EGTLRQ PRH+VAERAIL C +K PGNYLQAL AIPRTLRMM+VHSYQSYLWNHAA
Sbjct: 361  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 1235 SMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDNGNDTQVDCHLDDISITDLSE 1056
            SMR+Q YG  QVVLGDLVYCK    +K     +  ++DD  +D     H D+IS TDL E
Sbjct: 421  SMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 480

Query: 1055 VKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAH 876
             ++  VKA+  ED++   YTIDD+VLPLPGSR  YP NDI ++YHD AKKD ISLTESAH
Sbjct: 481  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISLTESAH 540

Query: 875  NSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFV---- 708
            + KEFS+TNMTG +RRVFQKP DFEWELL Y + NIPLAETDWD I+K S PS  +    
Sbjct: 541  SVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITK-SKPSNIIGGED 599

Query: 707  -RDSDEKEQ----IKCQADCDNEIELVAGTGETK--SDIQIEEESLAAASKTQESEMALK 549
             R+ +EKE     +K     ++ + L     E    ++I + +      S   E++ ALK
Sbjct: 600  SRNGNEKENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGLPQVEPQFESGAPEAQRALK 659

Query: 548  LSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
            LSFTLPASCYATMAIRELLKTSTSVAF K LN
Sbjct: 660  LSFTLPASCYATMAIRELLKTSTSVAFQKTLN 691


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  863 bits (2230), Expect = 0.0
 Identities = 450/692 (65%), Positives = 523/692 (75%), Gaps = 11/692 (1%)
 Frame = -2

Query: 2495 MTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKK 2316
            M  +EESDVGI  YIS LPGFRGILKQRY DFIVNEVD DGNVVHLTSL+AP E+ E+ +
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 2315 EKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRT 2136
             KI+D  +K Y+SE+E FR+L GDSDVE LK  +DQ+  G+      IVLS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 2135 AVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXKPYDCRGS 1956
            AVHNFFKE L FLVTDT+DGPD+ SKC+RVRL                    KP+D RGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 1955 DSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 1776
            D+W + +GKFLRFHLYKENKDTQEA+GL+GKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 1775 QRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATAL 1596
            Q AN+LAALNERLIGIKVG+FC+V EGLVLGQL GNRFTITLR + A++E+ I+ASA AL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 1595 AKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRKIREYYKE 1416
             + GFINYFGLQRFGS S+ THLIGAALL GEW+ AV +ILDPREG+  +  K REYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGDI-LLLKAREYYKE 359

Query: 1415 SGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAA 1236
            S D+EGTLRQ PRH+VAERAIL C +K PGNYLQAL AIPRTLRMM+VHSYQSYLWNHAA
Sbjct: 360  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 419

Query: 1235 SMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDNGNDTQVDCHLDDISITDLSE 1056
            SMR+Q YG  QVVLGDLVYCK    +K     +  ++DD  +D     H D+IS TDL E
Sbjct: 420  SMRVQNYGTKQVVLGDLVYCKGDNAEKVTRVVNSEFDDDGCSDAFDSSHFDEISETDLPE 479

Query: 1055 VKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAH 876
             ++  VKA+  ED++   YTIDD+VLPLPGSR  YP NDI ++YHD AKKD ISLTESAH
Sbjct: 480  ERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISLTESAH 539

Query: 875  NSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFV---- 708
            + KEFS+TNMTG +RRVFQKP DFEWELL Y + NIPLAETDWD I+K S PS  +    
Sbjct: 540  SVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEGNIPLAETDWDKITK-SKPSNIIGGED 598

Query: 707  -RDSDEKEQ----IKCQADCDNEIELVAGTGETK--SDIQIEEESLAAASKTQESEMALK 549
             R+ +EKE     +K     ++ + L     E    ++I + +      S   E++ ALK
Sbjct: 599  SRNGNEKENSFQCMKQSESFEHNVNLSTDNNEPNGVTEIGLPQVEPQFESGAPEAQRALK 658

Query: 548  LSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
            LSFTLPASCYATMAIRELLKTSTSVAF K LN
Sbjct: 659  LSFTLPASCYATMAIRELLKTSTSVAFQKTLN 690


>gb|EOY11114.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
          Length = 732

 Score =  854 bits (2207), Expect = 0.0
 Identities = 443/700 (63%), Positives = 527/700 (75%), Gaps = 12/700 (1%)
 Frame = -2

Query: 2516 SDHSERSMTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPL 2337
            S +S   MT++ ESDVGILC+ISHLPGFRGILKQRYSDFIVNEVD +GNVVHLTSL+AP 
Sbjct: 36   SSNSLTLMTTITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPP 95

Query: 2336 ETAEEKKEKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPS 2157
            E  +E + K  D L+K Y+SE+  FR+LAGD+D ++L+ F++QI  G   +   IVLSP 
Sbjct: 96   EAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSGSEEDICPIVLSPD 155

Query: 2156 SDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXK 1977
            SDKSHRTA+HNFFKE L FLVTDTVDGPDS SKC+RVRL                     
Sbjct: 156  SDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKGRNSKKRKERGDK- 214

Query: 1976 PYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVST 1797
            PYD RGS  WP+ +GKFLRFHLYKENKDTQEALGL+GKMLGIQPRSFGFAGTKDKRSVST
Sbjct: 215  PYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSFGFAGTKDKRSVST 274

Query: 1796 QRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDII 1617
            QRVTVFKQ A++LAALNERLIGIKVG+FCYV +  +LGQL GNRFTI LR + A++E+ I
Sbjct: 275  QRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTIILRGIVADSEETI 334

Query: 1616 RASATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRK 1437
            +AS  +L ++GFINYFGLQRFGS SI TH IGA LL GEW+AA   ILDPREGE+D   K
Sbjct: 335  KASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTILDPREGERDFVSK 394

Query: 1436 IREYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQS 1257
             REYYKE+GD+EGTLRQLPRH+VAERA+L C +KCPGNYLQAL AIPRTLRMM+VHSYQS
Sbjct: 395  AREYYKETGDIEGTLRQLPRHLVAERAMLQCLKKCPGNYLQALKAIPRTLRMMYVHSYQS 454

Query: 1256 YLWNHAASMRIQKYGVHQVVLGDLVYCK--EQETQKEMTSSHLNWEDDNGNDTQVDCHLD 1083
            YLWNHAASMR++KYG ++VVLGDLVYCK  + E  K + S H   ED+N  D      LD
Sbjct: 455  YLWNHAASMRVEKYGSNEVVLGDLVYCKGNDAEKVKVVPSEH---EDNNFEDAYDCSQLD 511

Query: 1082 DISITDLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKD 903
            +IS TDL E K+  VKAI   DI    YTI+D+VLP+PGSRI YP+NDI  +YHD+AKKD
Sbjct: 512  EISGTDLPEGKNNLVKAITAADISTGNYTIEDVVLPMPGSRIIYPVNDIANVYHDMAKKD 571

Query: 902  GISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKS-- 729
            GISLTES HN KEFS+T+MTG+YRRVFQKP DFEWELL+Y D +I L+ETD D I+K+  
Sbjct: 572  GISLTESVHNIKEFSITSMTGSYRRVFQKPIDFEWELLSYTDGSIALSETDLDKIAKTKP 631

Query: 728  ------SSPSTFVRDSDEKEQIKCQADCDNEIELVAGTGETKSDIQIEEESLAA--ASKT 573
                    P+      D  + ++     +++ +   G  E +   + E   + +   S +
Sbjct: 632  VNLVKEEKPTDGTEGQDSSDHMEHIESFEDDKKFSTGNVEVEGSREAEPPQIHSLPESNS 691

Query: 572  QESEMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
              ++ ALKL+FTLPASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 692  LGTQKALKLAFTLPASCYATMAIRELLKTSTSVAFHKTLN 731


>ref|XP_006382775.1| hypothetical protein POPTR_0005s05300g [Populus trichocarpa]
            gi|550338143|gb|ERP60572.1| hypothetical protein
            POPTR_0005s05300g [Populus trichocarpa]
          Length = 752

 Score =  851 bits (2199), Expect = 0.0
 Identities = 444/725 (61%), Positives = 532/725 (73%), Gaps = 32/725 (4%)
 Frame = -2

Query: 2531 VLKPFSDHSER-----------SMTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEV 2385
            VLKP+     R           S  S+EESDVGILCYIS LPGFRGILKQRY+DFIVNEV
Sbjct: 29   VLKPYKGQPTRLATSRVPVPVPSTASMEESDVGILCYISQLPGFRGILKQRYADFIVNEV 88

Query: 2384 DLDGNVVHLTSLEAPLETAEEKKEKITDILD------KDYSSEMESFRALAGDSDVEKLK 2223
            D DGNVVHLT LE P +  EE KE    + D      K Y +E+E FR+LAGDSD EKL+
Sbjct: 89   DTDGNVVHLTCLEPPPQMVEETKECGAKVSDEKMSESKSYEAEIELFRSLAGDSDAEKLE 148

Query: 2222 YFVDQIGLGVNSNDE--SIVLSPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVR 2049
              + Q+     S D    IVLSP SDK+HRTAVHNFFK+   FLVTDT DGPD+ SKC+R
Sbjct: 149  SLISQVDSCTGSEDSVPHIVLSPDSDKTHRTAVHNFFKQNFKFLVTDTTDGPDASSKCIR 208

Query: 2048 VRLXXXXXXXXXXXXXXXXXXXXKPYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLL 1869
            VRL                    KP+D RGS +WP+ +GKFLRFHLYKENKDTQEALG++
Sbjct: 209  VRLDSGGHKNNGRNSKKRKERGEKPFDSRGSSNWPEHLGKFLRFHLYKENKDTQEALGII 268

Query: 1868 GKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLV 1689
            GKMLGIQ +SFGFAGTKDKR+VSTQRVTVFKQ+A++LAALN+RLIGIKVG+FC+V EGL+
Sbjct: 269  GKMLGIQSKSFGFAGTKDKRAVSTQRVTVFKQQASRLAALNDRLIGIKVGDFCHVKEGLL 328

Query: 1688 LGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFINYFGLQRFGSSSIATHLIGAALL 1509
            LG+L GNRFT+TLR + A++ED I+A+A +L ++GFINYFGLQRFG+ S+ THLIGAALL
Sbjct: 329  LGRLLGNRFTVTLRGVIADSEDTIKAAADSLGRHGFINYFGLQRFGTGSVPTHLIGAALL 388

Query: 1508 HGEWKAAVGMILDPREGE-----KDVTRKIREYYKESGDVEGTLRQLPRHMVAERAILHC 1344
             GEWK AV MILDPREG+       V RK REYYKES D+EGTLRQLPRH+VAERA+L C
Sbjct: 389  RGEWKTAVSMILDPREGDILLLFPYVIRKAREYYKESNDIEGTLRQLPRHLVAERAVLQC 448

Query: 1343 FQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCKEQE 1164
             +KCPG+YLQA+ AIPRTLRMM+VH YQSYLWNHAAS R+QKYG  QV+LGDLVYCK  +
Sbjct: 449  LKKCPGDYLQAMKAIPRTLRMMYVHGYQSYLWNHAASERVQKYGFDQVLLGDLVYCKGDD 508

Query: 1163 TQKEMTSSHLNWEDDNGNDTQVDCHLDDISITDLSEVKSMSVKAICDEDIVAEKYTIDDI 984
            ++KE    +    DDN +DT    HLD+ S TDL E K+  VK +  ED+    YT+DD+
Sbjct: 509  SEKETVGVNSECNDDNCDDTYDCSHLDETSGTDLLERKNTLVKVVTVEDMSTGNYTVDDV 568

Query: 983  VLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDF 804
            VLP+PGSR+ +P N+I ++YHDLAKKD I+LTES H  KEFS+T+MTG+YRRVFQKP DF
Sbjct: 569  VLPMPGSRVIFPTNEIAKVYHDLAKKDAINLTESVHRVKEFSITSMTGSYRRVFQKPLDF 628

Query: 803  EWELLNYKDPNIPLAETDWDIISKSSSPSTFVR--------DSDEKEQIKCQADCDNEIE 648
            EWELL Y D N PLAETD D ISK+ S +   +        D+D  +  K      N I 
Sbjct: 629  EWELLTYNDSNKPLAETDLDKISKTGSTNIIKQEEQGKGDEDNDLSDCTKLPVCSRNSIA 688

Query: 647  LVAGTGETKSDIQIEEESLAAASKTQESEMALKLSFTLPASCYATMAIRELLKTSTSVAF 468
            L + T E +S+ ++E E + + S  QE++MALKLS TLPASCYATMAIRELLKTSTSVA+
Sbjct: 689  LSSDTNE-ESEREVESEQV-SGSNWQETQMALKLSLTLPASCYATMAIRELLKTSTSVAY 746

Query: 467  HKALN 453
            HK LN
Sbjct: 747  HKTLN 751


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  851 bits (2199), Expect = 0.0
 Identities = 438/712 (61%), Positives = 544/712 (76%), Gaps = 24/712 (3%)
 Frame = -2

Query: 2516 SDHSERS-MTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAP 2340
            +DHS ++ MT++EESDVGI CYIS +PGFRGILKQRYSDFIVNEVD +GNVVHLTSL  P
Sbjct: 41   ADHSFKTLMTTIEESDVGISCYISKVPGFRGILKQRYSDFIVNEVDNNGNVVHLTSLHVP 100

Query: 2339 ---LETAEEKKEKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNS-NDESI 2172
               +E AEE++E+IT+ + K+Y++E+ESFR LAGD+D ++L+ F++Q+    N  N   I
Sbjct: 101  REIVEVAEEREEEITNQVGKNYAAEIESFRELAGDADTQRLEAFINQVISEDNCINISPI 160

Query: 2171 VLSPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXX 1992
            +LSP SDK+HRTA HNFFKE+L FLVTDTVDGPD+ SKC+RVRL                
Sbjct: 161  LLSPDSDKAHRTATHNFFKEKLKFLVTDTVDGPDASSKCIRVRLNSRGNINEGNRNSKKR 220

Query: 1991 XXXXK-PYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKD 1815
                  P+D RGSD WP+ +GKFLRFHLYKENKDTQEA+GL+GKMLGIQPRSFGFAGTKD
Sbjct: 221  KDRNDKPFDSRGSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKD 280

Query: 1814 KRSVSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGA 1635
            KRSVSTQRVTVFKQ A++LAALN+RLIGIKVG+FCYVNEGL+LGQL GNRFT+TLR + A
Sbjct: 281  KRSVSTQRVTVFKQHASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVTLRGVVA 340

Query: 1634 ETEDIIRASATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGE 1455
            ++ED I+ SA +L ++GFINYFGLQRFGS S+ THLIGAALL GEWK AV MILDPREG+
Sbjct: 341  DSEDTIKGSADSLGRHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMILDPREGD 400

Query: 1454 KDV-------TRKIREYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIP 1296
              +        R  REYYKES D++GTLRQLPR++ AERA+L C +KCPGNYLQAL AIP
Sbjct: 401  ILLLVICFMWMRMAREYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQALKAIP 460

Query: 1295 RTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDN 1116
            RTLRMM+VHSYQSYLWNHAASMR+QKYG  QVV+GDLVYCK  +T++E+ S++   EDD+
Sbjct: 461  RTLRMMYVHSYQSYLWNHAASMRVQKYGTDQVVVGDLVYCKGDDTEREIGSANSACEDDD 520

Query: 1115 GNDTQVDCHLDDISITDLSEVKSMSVK---AICDEDIVAEKYTIDDIVLPLPGSRITYPL 945
              D     +LD+ S TDLSE K   VK   A+  ED+    YTI+D++LP+PGSR++YP 
Sbjct: 521  CEDMYGCSNLDETSGTDLSERKDTLVKVEQAVNAEDLSTGNYTINDVILPMPGSRVSYPT 580

Query: 944  NDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIP 765
            NDI ++YHDLA+KD I+L ES H++KEFS+T+MTG+YRRVFQKP DFEWE+L+Y D   P
Sbjct: 581  NDIAKVYHDLAEKDAINLAESVHSAKEFSITSMTGSYRRVFQKPMDFEWEILSYTDGTTP 640

Query: 764  LAETDWDIISKSSSPSTFVRDSDEKEQIKCQADC-------DNEIELVAG-TGETKSDIQ 609
            LAETD + ++K+ S      +  +K   K  +DC        N++ L A    E + +++
Sbjct: 641  LAETDMEKLAKAKSIELNKEEETKKNDTKSPSDCMRQPMSSGNDLHLSAEYNREGEREVE 700

Query: 608  IEEESLAAASKTQESEMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
            + +        T+ ++ ALKL+FTLPASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 701  VAKVEPLYGPNTRGAQTALKLTFTLPASCYATMAIRELLKTSTSVAFHKTLN 752


>gb|EXB39195.1| Multisubstrate pseudouridine synthase 7 [Morus notabilis]
          Length = 784

 Score =  848 bits (2192), Expect = 0.0
 Identities = 441/705 (62%), Positives = 529/705 (75%), Gaps = 10/705 (1%)
 Frame = -2

Query: 2558 LKPYSKRSAVLKPFSDHS-ERSMTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVD 2382
            LKPYS  +      S  +   +M +++ESDVGI CYIS+LPGFRGILKQRYSDFIVNEVD
Sbjct: 38   LKPYSLCNYTTIAASHKALTTAMKTLDESDVGIFCYISNLPGFRGILKQRYSDFIVNEVD 97

Query: 2381 LDGNVVHLTSLEAPLETAEEKKEKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIG 2202
             DGNVVHLTSL+AP ET EE + +  D   K Y+SE+ESFR LAGDSD E L+  ++QI 
Sbjct: 98   TDGNVVHLTSLDAPPETREETRTETIDAGTKSYTSEIESFRCLAGDSDAESLEALINQIN 157

Query: 2201 LGVNSNDESIVLSPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXX 2022
             G       IVLSPSSDKSHRT +HNFFK+   FLVTDTVDGPD+ SKC+RVRL      
Sbjct: 158  SGGGEEVSPIVLSPSSDKSHRTEIHNFFKKNFKFLVTDTVDGPDASSKCIRVRLNSGRHN 217

Query: 2021 XXXXXXXXXXXXXXKPYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPR 1842
                          KP+D RGSD WP+ +GKFLRFHLYKENKD+QEALGL+GKMLGIQPR
Sbjct: 218  NHGRNSKKRKERGDKPFDRRGSDDWPEHVGKFLRFHLYKENKDSQEALGLIGKMLGIQPR 277

Query: 1841 SFGFAGTKDKRSVSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRF 1662
            SFGFAGTKDKRSVSTQRVTVFKQRA++LAALN+RLIGI+VG+FCYV E LVLGQL GNRF
Sbjct: 278  SFGFAGTKDKRSVSTQRVTVFKQRASRLAALNDRLIGIQVGDFCYVKEELVLGQLSGNRF 337

Query: 1661 TITLRSLGAETEDIIRASATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVG 1482
            T+TLR + A++E+ I+ASA+AL + GFINYFGLQRFGS S+ T+LIGA L  GEWK AV 
Sbjct: 338  TVTLRGVVADSEETIKASASALGRRGFINYFGLQRFGSGSVPTYLIGAMLFRGEWKDAVH 397

Query: 1481 MILDPREGE--KDVTRKIREYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQAL 1308
            MILDPREG+   DV  K REYYKE+ D++GTLRQLPRH+VAE AIL C +KCPGNYLQAL
Sbjct: 398  MILDPREGDILLDVITKAREYYKETNDIDGTLRQLPRHLVAENAILQCLKKCPGNYLQAL 457

Query: 1307 SAIPRTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNW 1128
             AIPRTLRMM+VHSYQSYLWNHAAS R+QKYG  QVV+GDLV+CKE   +K   ++  + 
Sbjct: 458  KAIPRTLRMMYVHSYQSYLWNHAASTRVQKYGTDQVVVGDLVFCKEHNIEKVKGTASADC 517

Query: 1127 EDDNGNDTQVDCHLDDISITDLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYP 948
            +D++ N       +D++S  +L E ++  VK +  EDI+A  + IDD+VLPLPGSR+  P
Sbjct: 518  KDEDSNAIFGSHDIDEVSGAELPEERNNPVKVVAAEDILAGNFAIDDVVLPLPGSRVILP 577

Query: 947  LNDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNI 768
             NDI ++YHDLAKKD ISLTESAHN KEFS+T+MTG+YRRVFQKP D+EWELL Y +  I
Sbjct: 578  TNDIAQVYHDLAKKDAISLTESAHNVKEFSITSMTGSYRRVFQKPVDYEWELLTYTNGTI 637

Query: 767  PLAETDWDIISKSSSPSTFVRDSD---EKEQIKCQADCDNEIELVAG----TGETKSDIQ 609
            PLAETD DII+K S P+    +++    +E  K     +NE  L        GE ++++Q
Sbjct: 638  PLAETDLDIIAK-SKPAHVAEENEVNGNEESTKRSKRVENEAVLQTDDNKVDGEREAELQ 696

Query: 608  IEEESLAAASKTQESEMALKLSFTLPASCYATMAIRELLKTSTSV 474
             E       + +QE +MALKLSFTLPASCYATMAIRELLKTSTSV
Sbjct: 697  AES---TCGTNSQEPQMALKLSFTLPASCYATMAIRELLKTSTSV 738


>ref|XP_004302031.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 693

 Score =  840 bits (2170), Expect = 0.0
 Identities = 433/693 (62%), Positives = 523/693 (75%), Gaps = 14/693 (2%)
 Frame = -2

Query: 2489 SVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEK 2310
            + +ES+VGI CYIS LPGFRGILKQRYSDF+VNEVD++GNVVHLT+LEAP E  +E   K
Sbjct: 2    TTQESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAK 61

Query: 2309 ITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAV 2130
              D   KDYS+E+E FR LA   DVE+L+ F+ ++  G       IVLSP  DK HRTAV
Sbjct: 62   TEDAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAV 121

Query: 2129 HNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXKPYDCRGSDS 1950
            HNFFKE L FLVTD VDGPD+ SKC+RVRL                    KP+D RG D 
Sbjct: 122  HNFFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDD 181

Query: 1949 WPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQR 1770
            W + +GKFLRFHL+KENKDTQEALG++GKMLGIQPR+FGFAGTKDKR+V+ QRVTVFKQ 
Sbjct: 182  WSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQF 241

Query: 1769 ANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAK 1590
            A++LAALN+RLIGIKVG+FCYV EGL LGQL GNRFTITLR + A++EDII+ASA AL K
Sbjct: 242  ASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGK 301

Query: 1589 NGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRKIREYYKESG 1410
             GF+NYFGLQRFGS SI THLIGA+LL GEWK+ V M+L+PREGE+DV  + R+YYKES 
Sbjct: 302  QGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESN 361

Query: 1409 DVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASM 1230
            D++GTLR+LPR++VAERA+L C +KCPGNY QAL A+PRTLRMM+VHSYQSYLWNHAASM
Sbjct: 362  DIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASM 421

Query: 1229 RIQKYGVHQVVLGDLVYCKEQETQK--EMTSSHL---NWEDDNGNDTQVDCHLDDISITD 1065
            R+QKYG  +VV+GDLVYCK  ET+K   + SS     N  D+N +DT    HLDDIS T+
Sbjct: 422  RVQKYGTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETN 481

Query: 1064 LSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTE 885
            + E +   VKA+  EDI    YTIDDIVLPLPGSR+ +P NDI  ++HDLAKKDGISLTE
Sbjct: 482  VPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGISLTE 541

Query: 884  SAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSS------ 723
            S HN KEFS+TN+TG+YRRVFQKP DFEW++L Y D NIPL ETD++ I+K+        
Sbjct: 542  SVHNVKEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVNVNKE 601

Query: 722  -PSTFVRDSDEKEQIKCQADCD-NEIELVAGTGETKSD-IQIEEESLAAASKTQESEMAL 552
             P+    D    ++IK Q++C  N+++L     E +S+  ++           Q +++AL
Sbjct: 602  YPTGVSGDGSLHDRIK-QSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQIAL 660

Query: 551  KLSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
            KLSFTLPASCYATMAIRELLKTSTSVAFHK LN
Sbjct: 661  KLSFTLPASCYATMAIRELLKTSTSVAFHKTLN 693


>ref|XP_006471920.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Citrus sinensis]
          Length = 739

 Score =  837 bits (2163), Expect = 0.0
 Identities = 432/720 (60%), Positives = 531/720 (73%), Gaps = 15/720 (2%)
 Frame = -2

Query: 2567 QIKLKPYSKRSAVLKPFSDHSERSMTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNE 2388
            Q  LKPY       +     +  +M +V+ESD GILC+IS+LPGFRGILKQRY DFIVNE
Sbjct: 21   QSALKPYPLFCYNSRFCKTLTTTTMKTVDESDAGILCFISNLPGFRGILKQRYCDFIVNE 80

Query: 2387 VDLDGNVVHLTSLEAPLETA--EEKKEKITDILDKDYSSEMESFRALAGDSDVEKLKYFV 2214
            VD D  VVHLTSL+ P E A  E  + K +D L++ Y+SE+ESFR+LAGDSD + L+  +
Sbjct: 81   VDTDRKVVHLTSLDVPPEEAAVEHNETKASDQLNRSYASEIESFRSLAGDSDAQCLETLI 140

Query: 2213 DQIGLGVNSND-ESIVLSPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLX 2037
            +Q+  G N +    IVLS +SDKSHRTA+HNFFK+   FLVTDTVDGPD+ SKC+RVRL 
Sbjct: 141  NQVTSGKNEDSIPPIVLSANSDKSHRTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLN 200

Query: 2036 XXXXXXXXXXXXXXXXXXXK-PYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKM 1860
                                 P+D RGS++WP+ +GKFLRFHLYKENKDTQEALGL+ KM
Sbjct: 201  SGGNNNSMGRNSKKRKERGDNPFDSRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKM 260

Query: 1859 LGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQ 1680
            LGI PRSFGFAGTKDKRSVSTQRVTVFKQRA+KLAALN+RLIGI++G+FCYV EGL+LGQ
Sbjct: 261  LGILPRSFGFAGTKDKRSVSTQRVTVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQ 320

Query: 1679 LQGNRFTITLRSLGAETEDIIRASATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGE 1500
            L GNRFTITLR +  ++ED+I+ASA +L +NGFINYFGLQRFGS S+ THL+GA LL GE
Sbjct: 321  LLGNRFTITLRGVVVDSEDVIKASANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGE 380

Query: 1499 WKAAVGMILDPREGEKDVTRKIREYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNY 1320
            WK+AV MILDPREGE++   K REYYKE+ D++GTLR+LPRH+VAERAIL C +KCPGNY
Sbjct: 381  WKSAVKMILDPREGERNEISKAREYYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNY 440

Query: 1319 LQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSS 1140
            LQAL AIPRTLRMM+VHSYQS+LWNHAAS R+QK+G   VV+GDLV+CK  +T+KE+   
Sbjct: 441  LQALKAIPRTLRMMYVHSYQSFLWNHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCV 500

Query: 1139 HLNWEDDNGNDTQVDCHLDDISITDLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSR 960
            +  +E ++ ND     HLD++  TD  + +   VK +  EDI + KYTIDD+VLPLPGSR
Sbjct: 501  NPEFEYESSNDADDSSHLDEVPETDHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSR 560

Query: 959  ITYPLNDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYK 780
            + YP+ND+ E+YH LA+KDGI+LTES HN KEFS+T+MTG YRRVFQKP DFEWELL Y 
Sbjct: 561  VIYPMNDVAEVYHHLAEKDGINLTESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYI 620

Query: 779  DPNIPLAETDWDIISKSSSPSTFVRD--------SDEKEQIKCQADCDNEIELVAGTGET 624
            D N PLAETD D I+K    +    +         D  + +K       +I+L     E 
Sbjct: 621  DGNKPLAETDLDKIAKDKLANIVKEEEAVCGNKKKDPSDCMKQSESLSKDIKLSTENNEA 680

Query: 623  KSDIQIEE---ESLAAASKTQESEMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
                ++++   ES+  A  +Q  +MALKL  TLP+SCYATMAIRELLKTSTSVAFHK LN
Sbjct: 681  ACAKEVKQPHVESVCGAD-SQGKQMALKLGLTLPSSCYATMAIRELLKTSTSVAFHKTLN 739


>gb|EMJ09385.1| hypothetical protein PRUPE_ppa020985mg [Prunus persica]
          Length = 691

 Score =  834 bits (2155), Expect = 0.0
 Identities = 430/680 (63%), Positives = 512/680 (75%), Gaps = 6/680 (0%)
 Frame = -2

Query: 2495 MTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKK 2316
            M + EE DVGI CYIS LPGFRGILKQRYSDF+VNEVD + NVVHLT+L+AP ET +E +
Sbjct: 1    MKTTEEPDVGIFCYISQLPGFRGILKQRYSDFMVNEVDTEENVVHLTNLDAPAETVKEIE 60

Query: 2315 EKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRT 2136
             K  D   KDY++E+ESFR+L    D E+L+  ++QI  G   +   IVLSP  DKSHRT
Sbjct: 61   TKTHDATSKDYTTEIESFRSLVDPDDAERLEAIINQINSGSEDSILPIVLSPDYDKSHRT 120

Query: 2135 AVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXKPYDCRGS 1956
            AVHNFFKE   FLVTDTVDGPD+ SKC+RVR+                    KP+D RGS
Sbjct: 121  AVHNFFKENFKFLVTDTVDGPDASSKCIRVRINSGGQNSRGRNSRKRKERGDKPFDSRGS 180

Query: 1955 DSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 1776
            D W +++GKFLRFHLYKENKDTQEALG++ KMLGIQPRSFGFAGTKDKR+V+TQRVTVFK
Sbjct: 181  DDWSENVGKFLRFHLYKENKDTQEALGIIAKMLGIQPRSFGFAGTKDKRAVTTQRVTVFK 240

Query: 1775 QRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATAL 1596
            Q A++LAALN+RLIGIKVG+FCYV EGLVLGQL GNRFTITLR + A++ED I+AS  AL
Sbjct: 241  QLASRLAALNDRLIGIKVGDFCYVKEGLVLGQLLGNRFTITLRGVVADSEDTIKASVIAL 300

Query: 1595 AKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRKI----RE 1428
             K GFINYFGLQRFGS S+ THLIGA LL GEWK+ V + LDPREG  D+   +    RE
Sbjct: 301  GKQGFINYFGLQRFGSGSVPTHLIGATLLRGEWKSTVSLFLDPREG--DILLMLLGIARE 358

Query: 1427 YYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLW 1248
            YYKE+ D+EGTLRQLPRH+V+E+AIL C +KCPGNYLQAL AIPRTLRMM+VHSYQSYLW
Sbjct: 359  YYKETNDIEGTLRQLPRHLVSEKAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLW 418

Query: 1247 NHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDNGNDTQVDCHLDDISIT 1068
            NHAASMR+QKYG  +VVLGDLVYCK  ET+K          D+NGNDT     LDDIS T
Sbjct: 419  NHAASMRVQKYGTDRVVLGDLVYCKGNETEKVSEVVSSKCVDENGNDTLDPIDLDDISGT 478

Query: 1067 DLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLT 888
            +L E +   VKA+  EDI++  YTIDD+VLP+PGSR+ +P NDI  ++HDLAKKD ISLT
Sbjct: 479  NLPEERLNLVKAVTAEDILSGNYTIDDVVLPMPGSRVIFPENDIAHVFHDLAKKDAISLT 538

Query: 887  ESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFV 708
            ES HN KEFS+T+MTG+YRRVFQKP DFEWE+L Y D N PL +TD+D I+K + PS+  
Sbjct: 539  ESVHNVKEFSITSMTGSYRRVFQKPMDFEWEILKYIDGNKPLVDTDFDKIAK-TKPSSLN 597

Query: 707  RDSDEKEQIKCQADC-DNEIEL-VAGTGETKSDIQIEEESLAAASKTQESEMALKLSFTL 534
             D    ++ K Q++C DN+I L     G      ++ +      +  QE++ ALKLSFTL
Sbjct: 598  EDGRLHDKTK-QSECLDNDIGLQTDDNGAKAKGEELPQAESLCDTNPQETQTALKLSFTL 656

Query: 533  PASCYATMAIRELLKTSTSV 474
            PASCYATMAIRELLKTSTSV
Sbjct: 657  PASCYATMAIRELLKTSTSV 676


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  830 bits (2143), Expect = 0.0
 Identities = 430/712 (60%), Positives = 530/712 (74%), Gaps = 10/712 (1%)
 Frame = -2

Query: 2558 LKPYSKRSAVLKPFSDHSERSMT-----SVEESDVGILCYISHLPGFRGILKQRYSDFIV 2394
            LKPY   +++  P   +   S+      SV ESDVGIL YIS LPGFRGILKQRYSDFIV
Sbjct: 14   LKPYFLYNSLTTPKLTNRSSSIAVMTTKSVGESDVGILSYISSLPGFRGILKQRYSDFIV 73

Query: 2393 NEVDLDGNVVHLTSLEAPLET-AEEKKEKITDILDKDYSSEMESFRALAGDSDVEKLKYF 2217
            NEVD DGNVVHLTSL+AP E    E    I     + Y+SE+E FR+LAGDSD E L+ F
Sbjct: 74   NEVDTDGNVVHLTSLDAPPEVIVSESGPTIVHSTSQSYASEIELFRSLAGDSDAEILEIF 133

Query: 2216 VDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLX 2037
            + QI  GVN +   IV SP +DK+HRTAVHNFFK +  FLVTDT+DGPDS SKCVRVR+ 
Sbjct: 134  LKQINSGVNDDILPIVFSPDTDKTHRTAVHNFFK-KFKFLVTDTIDGPDSSSKCVRVRVD 192

Query: 2036 XXXXXXXXXXXXXXXXXXXKPYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKML 1857
                               KP+D RGSD+WP+ +GKFLRFHLYKENKDTQEALGL+GKML
Sbjct: 193  SGAQNNRGRFSKKRKERGDKPFDSRGSDNWPEHVGKFLRFHLYKENKDTQEALGLIGKML 252

Query: 1856 GIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQL 1677
            GIQ RSFGFAGTKDKRS+STQRVTVFKQ A+++AALN+RLIGIK+GNF Y+ EGL+LGQL
Sbjct: 253  GIQTRSFGFAGTKDKRSISTQRVTVFKQHASRIAALNDRLIGIKLGNFSYIQEGLLLGQL 312

Query: 1676 QGNRFTITLRSLGAETEDIIRASATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEW 1497
             GNRFTITLR + A +ED+I+ASA AL ++GFINYFGLQRFGS S+ THL+GA+LL GEW
Sbjct: 313  LGNRFTITLRGVVANSEDVIKASAEALGRHGFINYFGLQRFGSGSVPTHLVGASLLRGEW 372

Query: 1496 KAAVGMILDPREGEKDVTRKIREYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYL 1317
            K AV MILDPREG+  +  + R+YYKES D++GTL+QLPR++VAERAIL C +KCPGNYL
Sbjct: 373  KGAVNMILDPREGDILLLMRARDYYKESDDIDGTLKQLPRYLVAERAILQCLKKCPGNYL 432

Query: 1316 QALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSH 1137
            QAL AIPRTLRMM+VHSYQSYLWNHAASMR+QKYG+ +VV+GDLVYCKE  T+     + 
Sbjct: 433  QALKAIPRTLRMMYVHSYQSYLWNHAASMRVQKYGIDKVVVGDLVYCKENHTETAAVQNS 492

Query: 1136 LNWEDDNGNDTQV--DCHLDDISITDLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGS 963
              +ED++  D      CHL+++    L   +   VKA+   D+++  +TIDD+VLPLPGS
Sbjct: 493  EEYEDEDCGDANSYDSCHLEEVCKLGLPTERHKLVKAVTAGDVLSGNFTIDDVVLPLPGS 552

Query: 962  RITYPLNDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNY 783
            R+ YP NDI E+Y+DLA KD ISLT S HN KEFS+T+MTG+YRRVFQ+PKD+EWEL++Y
Sbjct: 553  RVLYPTNDIAEVYNDLATKDSISLTNSVHNVKEFSITSMTGSYRRVFQRPKDYEWELISY 612

Query: 782  KDPNIPLAETDWDIISKSSSPSTFVRDSDEKEQIKCQADCDNEIELVAGTGETKSDIQIE 603
             D N+PLA++D   + KS S      +  ++E+I  ++  ++ ++    +   K +IQ+E
Sbjct: 613  VDRNLPLAQSDLHNLLKSQSV-----EISKEEKIADKSKNEDSLDSTDQSVCCKKNIQLE 667

Query: 602  E--ESLAAASKTQESEMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
               +       TQ+ +MALKLSFTLPAS YATMAIRELLKTSTSVAFHK LN
Sbjct: 668  AGGKENENGQGTQDPQMALKLSFTLPASSYATMAIRELLKTSTSVAFHKTLN 719


>gb|EOY11113.1| Pseudouridine synthase family protein, putative isoform 1 [Theobroma
            cacao]
          Length = 763

 Score =  829 bits (2141), Expect = 0.0
 Identities = 441/731 (60%), Positives = 527/731 (72%), Gaps = 43/731 (5%)
 Frame = -2

Query: 2516 SDHSERSMTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPL 2337
            S +S   MT++ ESDVGILC+ISHLPGFRGILKQRYSDFIVNEVD +GNVVHLTSL+AP 
Sbjct: 36   SSNSLTLMTTITESDVGILCFISHLPGFRGILKQRYSDFIVNEVDTEGNVVHLTSLDAPP 95

Query: 2336 ET-------------AEEKKEKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLG 2196
            E               +E + K  D L+K Y+SE+  FR+LAGD+D ++L+ F++QI  G
Sbjct: 96   EVMIDVFSLNKFTQAVQEGETKTPDQLNKCYASEIIKFRSLAGDTDADRLEAFINQITSG 155

Query: 2195 VNSNDESIVLSPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXX 2016
               +   IVLSP SDKSHRTA+HNFFKE L FLVTDTVDGPDS SKC+RVRL        
Sbjct: 156  SEEDICPIVLSPDSDKSHRTAMHNFFKENLRFLVTDTVDGPDSSSKCIRVRLNSGNNNKG 215

Query: 2015 XXXXXXXXXXXXKPYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSF 1836
                         PYD RGS  WP+ +GKFLRFHLYKENKDTQEALGL+GKMLGIQPRSF
Sbjct: 216  RNSKKRKERGDK-PYDSRGSSHWPEHLGKFLRFHLYKENKDTQEALGLIGKMLGIQPRSF 274

Query: 1835 GFAGTKDKRSVSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTI 1656
            GFAGTKDKRSVSTQRVTVFKQ A++LAALNERLIGIKVG+FCYV +  +LGQL GNRFTI
Sbjct: 275  GFAGTKDKRSVSTQRVTVFKQHASRLAALNERLIGIKVGDFCYVKDDFLLGQLLGNRFTI 334

Query: 1655 TLRSLGAETEDIIRASATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMI 1476
             LR + A++E+ I+AS  +L ++GFINYFGLQRFGS SI TH IGA LL GEW+AA   I
Sbjct: 335  ILRGIVADSEETIKASVESLGRHGFINYFGLQRFGSGSIPTHRIGATLLRGEWQAAASTI 394

Query: 1475 LDPREGE------------------KDVTRKIREYYKESGDVEGTLRQLPRHMVAERAIL 1350
            LDPREG+                     T++ REYYKE+GD+EGTLRQLPRH+VAERA+L
Sbjct: 395  LDPREGDILSLTFFFPFLLGKALFRCLTTQRAREYYKETGDIEGTLRQLPRHLVAERAML 454

Query: 1349 HCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCK- 1173
             C +KCPGNYLQAL AIPRTLRMM+VHSYQSYLWNHAASMR++KYG ++VVLGDLVYCK 
Sbjct: 455  QCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASMRVEKYGSNEVVLGDLVYCKG 514

Query: 1172 -EQETQKEMTSSHLNWEDDNGNDTQVDCHLDDISITDLSEVKSMSVKAICDEDIVAEKYT 996
             + E  K + S H   ED+N  D      LD+IS TDL E K+  VKAI   DI    YT
Sbjct: 515  NDAEKVKVVPSEH---EDNNFEDAYDCSQLDEISGTDLPEGKNNLVKAITAADISTGNYT 571

Query: 995  IDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQK 816
            I+D+VLP+PGSRI YP+NDI  +YHD+AKKDGISLTES HN KEFS+T+MTG+YRRVFQK
Sbjct: 572  IEDVVLPMPGSRIIYPVNDIANVYHDMAKKDGISLTESVHNIKEFSITSMTGSYRRVFQK 631

Query: 815  PKDFEWELLNYKDPNIPLAETDWDIISKS--------SSPSTFVRDSDEKEQIKCQADCD 660
            P DFEWELL+Y D +I L+ETD D I+K+          P+      D  + ++     +
Sbjct: 632  PIDFEWELLSYTDGSIALSETDLDKIAKTKPVNLVKEEKPTDGTEGQDSSDHMEHIESFE 691

Query: 659  NEIELVAGTGETKSDIQIEEESLAA--ASKTQESEMALKLSFTLPASCYATMAIRELLKT 486
            ++ +   G  E +   + E   + +   S +  ++ ALKL+FTLPASCYATMAIRELLKT
Sbjct: 692  DDKKFSTGNVEVEGSREAEPPQIHSLPESNSLGTQKALKLAFTLPASCYATMAIRELLKT 751

Query: 485  STSVAFHKALN 453
            STSVAFHK LN
Sbjct: 752  STSVAFHKTLN 762


>ref|XP_004302030.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 701

 Score =  827 bits (2137), Expect = 0.0
 Identities = 427/686 (62%), Positives = 517/686 (75%), Gaps = 14/686 (2%)
 Frame = -2

Query: 2489 SVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEKKEK 2310
            + +ES+VGI CYIS LPGFRGILKQRYSDF+VNEVD++GNVVHLT+LEAP E  +E   K
Sbjct: 2    TTQESEVGIFCYISPLPGFRGILKQRYSDFMVNEVDMEGNVVHLTNLEAPPEVVKENGAK 61

Query: 2309 ITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAV 2130
              D   KDYS+E+E FR LA   DVE+L+ F+ ++  G       IVLSP  DK HRTAV
Sbjct: 62   TEDAASKDYSAEIEKFRCLASGEDVERLEAFIREVNSGSEDGVMPIVLSPDYDKVHRTAV 121

Query: 2129 HNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXKPYDCRGSDS 1950
            HNFFKE L FLVTD VDGPD+ SKC+RVRL                    KP+D RG D 
Sbjct: 122  HNFFKENLKFLVTDAVDGPDASSKCIRVRLNSGGQNGRGRNSKKRKERGDKPFDSRGVDD 181

Query: 1949 WPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQR 1770
            W + +GKFLRFHL+KENKDTQEALG++GKMLGIQPR+FGFAGTKDKR+V+ QRVTVFKQ 
Sbjct: 182  WSEHVGKFLRFHLFKENKDTQEALGVIGKMLGIQPRAFGFAGTKDKRAVTCQRVTVFKQF 241

Query: 1769 ANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAK 1590
            A++LAALN+RLIGIKVG+FCYV EGL LGQL GNRFTITLR + A++EDII+ASA AL K
Sbjct: 242  ASRLAALNDRLIGIKVGDFCYVKEGLSLGQLLGNRFTITLRGVVADSEDIIQASANALGK 301

Query: 1589 NGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRKIREYYKESG 1410
             GF+NYFGLQRFGS SI THLIGA+LL GEWK+ V M+L+PREGE+DV  + R+YYKES 
Sbjct: 302  QGFVNYFGLQRFGSGSIPTHLIGASLLRGEWKSTVSMMLEPREGERDVITEARKYYKESN 361

Query: 1409 DVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASM 1230
            D++GTLR+LPR++VAERA+L C +KCPGNY QAL A+PRTLRMM+VHSYQSYLWNHAASM
Sbjct: 362  DIDGTLRKLPRYLVAERAVLQCLKKCPGNYSQALKAVPRTLRMMYVHSYQSYLWNHAASM 421

Query: 1229 RIQKYGVHQVVLGDLVYCKEQETQK--EMTSSHL---NWEDDNGNDTQVDCHLDDISITD 1065
            R+QKYG  +VV+GDLVYCK  ET+K   + SS     N  D+N +DT    HLDDIS T+
Sbjct: 422  RVQKYGTDRVVVGDLVYCKGHETEKVTGIVSSECVDENVNDENCDDTFDPNHLDDISETN 481

Query: 1064 LSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTE 885
            + E +   VKA+  EDI    YTIDDIVLPLPGSR+ +P NDI  ++HDLAKKDGISLTE
Sbjct: 482  VPEARVSLVKAVTAEDINNGTYTIDDIVLPLPGSRVIFPENDIAAVFHDLAKKDGISLTE 541

Query: 884  SAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSS------ 723
            S HN KEFS+TN+TG+YRRVFQKP DFEW++L Y D NIPL ETD++ I+K+        
Sbjct: 542  SVHNVKEFSITNVTGSYRRVFQKPVDFEWDILKYIDGNIPLVETDFEKIAKTKPVNVNKE 601

Query: 722  -PSTFVRDSDEKEQIKCQADCD-NEIELVAGTGETKSD-IQIEEESLAAASKTQESEMAL 552
             P+    D    ++IK Q++C  N+++L     E +S+  ++           Q +++AL
Sbjct: 602  YPTGVSGDGSLHDRIK-QSECSVNDVQLPKKDNEVESEGEKLPHVESLGGPIPQGTQIAL 660

Query: 551  KLSFTLPASCYATMAIRELLKTSTSV 474
            KLSFTLPASCYATMAIRELLKTSTSV
Sbjct: 661  KLSFTLPASCYATMAIRELLKTSTSV 686


>ref|XP_006432989.1| hypothetical protein CICLE_v10003382mg [Citrus clementina]
            gi|557535111|gb|ESR46229.1| hypothetical protein
            CICLE_v10003382mg [Citrus clementina]
          Length = 697

 Score =  816 bits (2108), Expect = 0.0
 Identities = 420/690 (60%), Positives = 517/690 (74%), Gaps = 15/690 (2%)
 Frame = -2

Query: 2495 MTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETA--EE 2322
            M +V+ESD GILC+IS+LPGFRGILKQRY DFIVNEVD D  VVHLTSL+ P E A  E 
Sbjct: 1    MKTVDESDAGILCFISNLPGFRGILKQRYCDFIVNEVDTDRKVVHLTSLDVPPEEAAVEH 60

Query: 2321 KKEKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSND-ESIVLSPSSDKS 2145
             + K +D L++ Y+SE+ESFR+LAGDSD + L+  ++Q+  G N +    IVLS +SDKS
Sbjct: 61   NETKASDQLNRSYASEIESFRSLAGDSDAQCLETLINQVTSGKNEDSIPPIVLSANSDKS 120

Query: 2144 HRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXK-PYD 1968
            HRTA+HNFFK+   FLVTDTVDGPD+ SKC+RVRL                      P+D
Sbjct: 121  HRTAIHNFFKDNFKFLVTDTVDGPDASSKCIRVRLNSGGNNNSMGRNSKKRKERGDNPFD 180

Query: 1967 CRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRV 1788
             RGS++WP+ +GKFLRFHLYKENKDTQEALGL+ KMLGI PRSFGFAGTKDKRSVSTQRV
Sbjct: 181  SRGSENWPEQLGKFLRFHLYKENKDTQEALGLISKMLGILPRSFGFAGTKDKRSVSTQRV 240

Query: 1787 TVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRAS 1608
            TVFKQRA+KLAALN+RLIGI++G+FCYV EGL+LGQL GNRFTITLR +  ++ED+I+AS
Sbjct: 241  TVFKQRASKLAALNKRLIGIRLGDFCYVKEGLLLGQLLGNRFTITLRGVVVDSEDVIKAS 300

Query: 1607 ATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRKIRE 1428
            A +L +NGFINYFGLQRFGS S+ THL+GA LL GEWK+AV MILDPREG+  +  K RE
Sbjct: 301  ANSLGRNGFINYFGLQRFGSGSVPTHLVGATLLRGEWKSAVKMILDPREGDI-LLFKARE 359

Query: 1427 YYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLW 1248
            YYKE+ D++GTLR+LPRH+VAERAIL C +KCPGNYLQAL AIPRTLRMM+VHSYQS+LW
Sbjct: 360  YYKETDDIDGTLRKLPRHLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSFLW 419

Query: 1247 NHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDNGNDTQVDCHLDDISIT 1068
            NHAAS R+QK+G   VV+GDLV+CK  +T+KE+   +  +E ++ ND     HLD++  T
Sbjct: 420  NHAASARVQKHGTEHVVVGDLVFCKGDDTEKELGCVNPEFEYESSNDADDSSHLDEVPET 479

Query: 1067 DLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLT 888
            D  + +   VK +  EDI + KYTIDD+VLPLPGSR+ YP+ND+ E+YH LA+KDGI+LT
Sbjct: 480  DHPDGRHNLVKTVTAEDINSGKYTIDDVVLPLPGSRVIYPMNDVAEVYHHLAEKDGINLT 539

Query: 887  ESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTFV 708
            ES HN KEFS+T+MTG YRRVFQKP DFEWELL Y D N PLAETD D I+K    +   
Sbjct: 540  ESLHNVKEFSITSMTGNYRRVFQKPMDFEWELLTYIDGNKPLAETDLDKIAKDKLANIVK 599

Query: 707  RD--------SDEKEQIKCQADCDNEIELVAGTGETKSDIQIEE---ESLAAASKTQESE 561
             +         D  + +K       +I+L     E     ++++   ES+  A  +Q  +
Sbjct: 600  EEEAVCGNKKKDPSDCMKQSESLSKDIKLSTENNEAACAKEVKQPHVESVCGAD-SQGKQ 658

Query: 560  MALKLSFTLPASCYATMAIRELLKTSTSVA 471
            MALKL  TLP+SCYATMAIRELLKTSTSV+
Sbjct: 659  MALKLGLTLPSSCYATMAIRELLKTSTSVS 688


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
            gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820
            [Arabidopsis thaliana] gi|61742699|gb|AAX55170.1|
            hypothetical protein At3g04820 [Arabidopsis thaliana]
            gi|332640619|gb|AEE74140.1| pseudouridine synthase
            [Arabidopsis thaliana]
          Length = 715

 Score =  807 bits (2085), Expect = 0.0
 Identities = 424/709 (59%), Positives = 520/709 (73%), Gaps = 7/709 (0%)
 Frame = -2

Query: 2558 LKPYSKRSAVLKPFSDHSE-RSMTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVD 2382
            LKPYS  S   K  +  +    M +V+E+DVGI C+IS LPGFRGILKQRY+DFIVNEVD
Sbjct: 15   LKPYSSLSWTTKIATIATNFEGMKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVD 74

Query: 2381 LDGNVVHLTSLEAPLETA--EEKKEKITDILDKDYSSEMESFRALAGDSDVEKLKYFVDQ 2208
            +DGNVVHLTSL+ P E A  EE K K  D + ++Y+S +ESF++++  +D E+L+  ++Q
Sbjct: 75   MDGNVVHLTSLDLPPEMAVKEEDKAKSCDNVPQNYTSAVESFKSISSVTDAERLEILINQ 134

Query: 2207 IGLGVNSNDESIVLSPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXX 2028
            +  G +     +VL PSSDKS RTA+HNF KE   FLVTDTVDGPDS SKC+RVR+    
Sbjct: 135  VTSGTDGEVLPVVLDPSSDKSKRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGA 194

Query: 2027 XXXXXXXXXXXXXXXXKPYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQ 1848
                            KP+D RGS+ WP+ +GKFLRFHLYKENKDTQEALGL+GKMLG+Q
Sbjct: 195  NNNRGNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQ 254

Query: 1847 PRSFGFAGTKDKRSVSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGN 1668
            P+SFGF+GTKDKRSVSTQRVTVFKQ+A+KLAALN+RL GIKVG+FC V EGL+LGQL GN
Sbjct: 255  PKSFGFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGN 314

Query: 1667 RFTITLRSLGAETEDIIRASATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAA 1488
            RFTITLR + A++E+ I+ SA +L K+GFINYFGLQRFGS S+ TH +GAALL GEWK A
Sbjct: 315  RFTITLRGVVADSEETIKQSAESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDA 374

Query: 1487 VGMILDPREGEKDVTRKIREYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQAL 1308
            V MILDPRE E+ V    REYYKE+GD++GTLRQLPR++VAERAIL C +KCPGNYLQAL
Sbjct: 375  VDMILDPRETERHVVNDAREYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQAL 434

Query: 1307 SAIPRTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNW 1128
              IPRTLRMM+VHSYQSYLWN+AAS+R++ YG  QVVLGDLV  K    ++ + S  L  
Sbjct: 435  KGIPRTLRMMYVHSYQSYLWNNAASLRVKNYGTSQVVLGDLVSTKVDAAKRMVDS--LTS 492

Query: 1127 EDDNGNDTQVDC-HLDDISITDLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITY 951
            E +  ++  +DC  +DD ++ DL   +S  VK +  ED+ A  Y+  DIVLPLPGSR+ Y
Sbjct: 493  EHNESSEEALDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYSTSDIVLPLPGSRVIY 552

Query: 950  PLNDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPN 771
            P NDI EIYHDLAKKDGISLTES H  KEFS+T+MTG YRRVFQKP DFEWELL Y D N
Sbjct: 553  PSNDIAEIYHDLAKKDGISLTESIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDSN 612

Query: 770  IPLAETDWDIISKSSSPSTFVRDSDEKEQIKCQADCDNEIELVAGTGETKSDIQI---EE 600
             PLAETD D I   + P   V  ++E E    ++D +        +GET    Q    E 
Sbjct: 613  KPLAETDLDRI-PMNKPVEKVGSTEEIEDESMKSDTNPH-----DSGETNLKDQTDSNEA 666

Query: 599  ESLAAASKTQESEMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
            E       +++++MALK++ TLP+SCYATMAIRELLKTSTSVA+HK LN
Sbjct: 667  EKDTGNPDSEQTQMALKMALTLPSSCYATMAIRELLKTSTSVAYHKTLN 715


>ref|XP_006577278.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Glycine max]
          Length = 690

 Score =  792 bits (2046), Expect = 0.0
 Identities = 410/691 (59%), Positives = 505/691 (73%), Gaps = 9/691 (1%)
 Frame = -2

Query: 2498 SMTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEAPLETAEEK 2319
            +M + EE +VGI C+IS LPGFRGILKQRYSDFIVNEVD DG VV L+SL+AP E  E  
Sbjct: 2    AMKTAEEHEVGISCFISDLPGFRGILKQRYSDFIVNEVDRDGTVVQLSSLDAPQEEPESS 61

Query: 2318 KEKITDILDK--DYSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVLSPSSDKS 2145
            +E  T+  D    Y+S++ESF++LAGDSD   L+ F+++I  G       IVLSP SDKS
Sbjct: 62   QENGTNTSDNVVSYASQIESFKSLAGDSDAVLLEEFINKINAGGEDGVSPIVLSPDSDKS 121

Query: 2144 HRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXXXXKPYDC 1965
            HR A+HNFFKE   FLVTD VDGPD+ SKC+RVRL                    KP+D 
Sbjct: 122  HRKAMHNFFKENFKFLVTDVVDGPDASSKCIRVRLNSAEPNNKGKNSKKRKERGDKPFDS 181

Query: 1964 RGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVT 1785
            RGS++WPK++GKFLRFHLYKENKDT EALG++G ML +QP+SFGFAGTKDKR+V+TQRVT
Sbjct: 182  RGSENWPKNVGKFLRFHLYKENKDTHEALGVIGNMLSVQPKSFGFAGTKDKRAVTTQRVT 241

Query: 1784 VFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETEDIIRASA 1605
            V+KQRA++LA+LN+RL GIK+G+FCYV EGL LGQL GNRFTITLR + A++EDII+ASA
Sbjct: 242  VYKQRASRLASLNKRLFGIKLGDFCYVKEGLCLGQLLGNRFTITLRGIVADSEDIIKASA 301

Query: 1604 TALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDVTRKIREY 1425
             AL ++GFINYFGLQRFGS S+ THLIGAALL GEWK AV MILDPR+GEK    K R+Y
Sbjct: 302  DALGRHGFINYFGLQRFGSGSLPTHLIGAALLQGEWKLAVDMILDPRDGEKSAIAKARKY 361

Query: 1424 YKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHSYQSYLWN 1245
            YKES DV GTL+QLPR++VAERA+L   +  PGNYLQAL +IPRTLRM++VHSYQSYLWN
Sbjct: 362  YKESSDVVGTLKQLPRYLVAERAVLQTLKTSPGNYLQALKSIPRTLRMLYVHSYQSYLWN 421

Query: 1244 HAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDNGNDTQVDCHLDDISITD 1065
            HAAS R+QKYG   VVLGDLVYCKE  T K   S    + +D     + D + +D    +
Sbjct: 422  HAASKRVQKYGTENVVLGDLVYCKENSTGKVTESVGSEYAEDCSG--RYDSNNEDEISGE 479

Query: 1064 LSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKKDGISLTE 885
            + E +  SVK +  ED+ +  YTIDD++LP+PGSRI YP N I  +Y DLAKKDGISLTE
Sbjct: 480  IHE-EIDSVKVVDVEDLNSGYYTIDDVILPMPGSRIKYPTNHIANVYEDLAKKDGISLTE 538

Query: 884  SAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSSSPSTF-- 711
            S HN ++FS+T++TG YRRVFQKP +FEWELL Y D N  L ETD D ++KS    T   
Sbjct: 539  SVHNVEDFSITSITGCYRRVFQKPINFEWELLTYSDSNKQLVETDLDKVNKSKPMGTVKQ 598

Query: 710  --VRDSDEKEQIKC--QADCDNEIELVAGTGE-TKSDIQIEEESLAAASKTQESEMALKL 546
                +   +E   C  + +  N++  V    E    +I++  +   + S +Q+S++ALKL
Sbjct: 599  MGAANGKNEEAFDCIRELESSNDVVKVENYSEIAGEEIKLPHDESLSGSSSQDSQIALKL 658

Query: 545  SFTLPASCYATMAIRELLKTSTSVAFHKALN 453
            SFTLPASCYATMAIRELLKTSTSVA+HK LN
Sbjct: 659  SFTLPASCYATMAIRELLKTSTSVAYHKTLN 689


>ref|XP_006300094.1| hypothetical protein CARUB_v10016322mg [Capsella rubella]
            gi|482568803|gb|EOA32992.1| hypothetical protein
            CARUB_v10016322mg [Capsella rubella]
          Length = 704

 Score =  784 bits (2024), Expect = 0.0
 Identities = 415/720 (57%), Positives = 517/720 (71%), Gaps = 7/720 (0%)
 Frame = -2

Query: 2591 IVSLKRLKQIKLKPYSK-RSAVLKPFSDHSERSMTSVEESDVGILCYISHLPGFRGILKQ 2415
            ++S  RL  + LKPYS          +D +   M +V+E+DVGI C+IS LPGFRGILKQ
Sbjct: 7    VLSCLRLPSL-LKPYSSFHWTTTMATTDKTIEGMKTVDEADVGISCFISQLPGFRGILKQ 65

Query: 2414 RYSDFIVNEVDLDGNVVHLTSLEAP--LETAEEKKEKITDILDKDYSSEMESFRALAGDS 2241
            RY+DFIVNEVD++GNVVHLTSL+ P  ++  EE K K +D + ++Y+S +ESF++++  +
Sbjct: 66   RYADFIVNEVDINGNVVHLTSLDLPPEMDVKEEDKTKSSDNVPQNYTSAIESFKSISNAT 125

Query: 2240 DVEKLKYFVDQIGLGVNSNDESIVLSPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLS 2061
            D E+L+  ++Q+  G +     +VL PSSDKS RTA+HNF KE   FLVTDTVDGPDS S
Sbjct: 126  DAERLETLINQVTSGTDDEISPVVLDPSSDKSKRTAIHNFVKENFKFLVTDTVDGPDSTS 185

Query: 2060 KCVRVRLXXXXXXXXXXXXXXXXXXXXKPYDCRGSDSWPKDMGKFLRFHLYKENKDTQEA 1881
            KC+RVR+                    KP+D RGS+ WP+ +GKFLRFHLYKENKDTQEA
Sbjct: 186  KCIRVRVNSGAHNNRGNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDTQEA 245

Query: 1880 LGLLGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVN 1701
            LGL+GKMLG+QP+SFGF+GTKDKRSVSTQ VTVFKQ+A+KLAALN+RL GIKVG+FC+V 
Sbjct: 246  LGLIGKMLGVQPKSFGFSGTKDKRSVSTQCVTVFKQQASKLAALNKRLFGIKVGDFCHVK 305

Query: 1700 EGLVLGQLQGNRFTITLRSLGAETEDIIRASATALAKNGFINYFGLQRFGSSSIATHLIG 1521
            EGL+LGQL GNRFTITLR + A++E+ I+ SA +L K+GFINYFGLQRFGS S+ TH +G
Sbjct: 306  EGLLLGQLMGNRFTITLRGVVADSEETIKKSAESLGKDGFINYFGLQRFGSGSVPTHHVG 365

Query: 1520 AALLHGEWKAAVGMILDPREGEKDVTRKIREYYKESGDVEGTLRQLPRHMVAERAILHCF 1341
            AALL GEWK A       R     V    REYYKE+GD++GTLRQLPR++VAERAIL C 
Sbjct: 366  AALLKGEWKDA------ERINAWHVVNDAREYYKETGDIDGTLRQLPRYLVAERAILQCL 419

Query: 1340 QKCPGNYLQALSAIPRTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCKEQET 1161
            +KCPGNYLQAL  IPRTLRMM+VHSYQSYLWN+AAS+R++KYG  QVVLGDLV  K   T
Sbjct: 420  KKCPGNYLQALKGIPRTLRMMYVHSYQSYLWNNAASLRVKKYGTSQVVLGDLVSTKIDAT 479

Query: 1160 QKEMTSSHLNWEDDNGNDTQVDC-HLDDISITDLSEVKSMSVKAICDEDIVAEKYTIDDI 984
            +K   +S    E    N+  +DC  +DD +I DL   +S  VK +  ED+ A  Y+  DI
Sbjct: 480  KKMADTS----EHKENNEDALDCDQVDDTAIVDLPAERSDLVKVVSVEDLEAGTYSTSDI 535

Query: 983  VLPLPGSRITYPLNDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDF 804
            VLPLPGSR+ YP NDI EIYHDLAKKDGISLT+S H  KEFS+T+MTG YRRVFQKP DF
Sbjct: 536  VLPLPGSRVIYPSNDIAEIYHDLAKKDGISLTDSIHGVKEFSITSMTGGYRRVFQKPIDF 595

Query: 803  EWELLNYKDPNIPLAETDWDIISKSSSPSTFVRDSDEKEQIKCQADCDNEIELVAGTGET 624
            EWELL Y D N PLAETD D I+ +      V  ++E E        D  +  ++   ET
Sbjct: 596  EWELLTYTDSNKPLAETDLDRITMTVDK---VGSAEEVE--------DESMNPISNPPET 644

Query: 623  KSDIQIE---EESLAAASKTQESEMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
              + Q E   +E       +++++MALK++ TLP+SCYATMAIRELLKTSTSVA+HK LN
Sbjct: 645  DLNDQTERKDDEKDTGNPNSEQTQMALKMALTLPSSCYATMAIRELLKTSTSVAYHKTLN 704


>ref|XP_004494684.1| PREDICTED: multisubstrate pseudouridine synthase 7-like isoform X1
            [Cicer arietinum]
          Length = 698

 Score =  783 bits (2021), Expect = 0.0
 Identities = 400/699 (57%), Positives = 510/699 (72%), Gaps = 18/699 (2%)
 Frame = -2

Query: 2495 MTSVEESDVGILCYISHLPGFRGILKQRYSDFIVNEVDLDGNVVHLTSLEA-------PL 2337
            M S+EE DVGI CYIS+LPGFRG+LKQRYSDFIVNEVD+DG VV L+SLEA       P+
Sbjct: 1    MNSMEEHDVGISCYISNLPGFRGVLKQRYSDFIVNEVDIDGKVVELSSLEASAEESKVPV 60

Query: 2336 ETAEEKKEKITDILDKD---YSSEMESFRALAGDSDVEKLKYFVDQIGLGVNSNDESIVL 2166
            + ++  +E  T+  + +   Y+S++ESF++LAG+SD   L+ F++QI +G   +   I+L
Sbjct: 61   DESKSVQENKTNTSESEVISYASQIESFKSLAGESDASSLEEFINQINVGGEDSPSPIIL 120

Query: 2165 SPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXXXXXXXXXXXXXXXXX 1986
            SP SDKSHRTAVH FF+E   FLVTDTVDGPD+ SKC+RVRL                  
Sbjct: 121  SPDSDKSHRTAVHVFFRENFKFLVTDTVDGPDASSKCIRVRLNSGGPNNKGKNSRKRKDR 180

Query: 1985 XXKPYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGIQPRSFGFAGTKDKRS 1806
              KP+D RGS++WP++ GKFLRFHL+KENKDTQEALG+LG MLGI+ RSFGFAGTKDKR+
Sbjct: 181  DNKPFDSRGSENWPENAGKFLRFHLFKENKDTQEALGVLGNMLGIKSRSFGFAGTKDKRA 240

Query: 1805 VSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQGNRFTITLRSLGAETE 1626
            V+TQRVTV+KQ+A KLA+LNE+L GIKVG+FCYVNEGL LGQL GNRFTITLR + A++ 
Sbjct: 241  VTTQRVTVYKQQARKLASLNEKLFGIKVGDFCYVNEGLCLGQLLGNRFTITLRGIVADSV 300

Query: 1625 DIIRASATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKAAVGMILDPREGEKDV 1446
            D I+A+A +L ++GFINYFGLQRFGS S+ TH IGAAL  GEWK AV +ILDPR+GE+ V
Sbjct: 301  DTIKAAADSLGRHGFINYFGLQRFGSGSVPTHRIGAALFRGEWKLAVDLILDPRDGERYV 360

Query: 1445 TRKIREYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQALSAIPRTLRMMFVHS 1266
              K R+YYK++ DV GTL+QLP+ +VAERA+L   ++ PGNYLQAL +IPRTLRMM+VHS
Sbjct: 361  IAKARKYYKDTNDVAGTLKQLPQFLVAERAVLKSLKQFPGNYLQALKSIPRTLRMMYVHS 420

Query: 1265 YQSYLWNHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLNWEDDNGNDTQVDCHL 1086
            YQSYLWNHAAS R+QKYG  QVVLGDLVYCKE    K         +DD G+    D ++
Sbjct: 421  YQSYLWNHAASTRVQKYGTEQVVLGDLVYCKENPPSKATEIVGSECDDDCGD--IYDSNI 478

Query: 1085 DDISITDLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRITYPLNDIGEIYHDLAKK 906
            +D    D+ +  + SVKA+  ED+ ++ YTIDD++LP+PGSR  YP NDI ++Y+DL  K
Sbjct: 479  EDEIPEDIHDKSNSSVKAVNAEDLNSKSYTIDDVILPMPGSRSIYPANDIVKVYNDLTNK 538

Query: 905  DGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDPNIPLAETDWDIISKSS 726
            DGISLTE+ HN+KEFS+T++TG+YRRVFQKP +FEWELL Y D N PL ETD D I KS 
Sbjct: 539  DGISLTENVHNAKEFSMTSVTGSYRRVFQKPINFEWELLTYTDSNKPLVETDLDKIGKSK 598

Query: 725  SPSTFVRDSDEKEQIKCQADCDNEIELVAGTGETKSD--------IQIEEESLAAASKTQ 570
              +     +   ++     DC  ++E      + ++D        + +  +     S ++
Sbjct: 599  RTNVHAVGASNGQKETTAFDCIRQVESSDDGVKVETDYDENASKEVILPHDESVPDSSSK 658

Query: 569  ESEMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
            +S  ALKL+FTLP+SCYATMAIRELLKTSTSVA+ K LN
Sbjct: 659  DSHTALKLTFTLPSSCYATMAIRELLKTSTSVAYQKTLN 697


>ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
            gi|297330312|gb|EFH60731.1| pseudouridylate synthase
            [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  781 bits (2016), Expect = 0.0
 Identities = 416/707 (58%), Positives = 514/707 (72%), Gaps = 5/707 (0%)
 Frame = -2

Query: 2558 LKPYSKRS-AVLKPFSDHSERSMTSVEESDVGILCYISHLPGFRGILKQR-YSDFIVNEV 2385
            LKPYS  S       +  +   MT+V+E+DVGI C+IS LPGFRGILKQR Y+DFIVNEV
Sbjct: 15   LKPYSSLSWTTTIATTAKTFEGMTTVDEADVGISCFISQLPGFRGILKQRSYADFIVNEV 74

Query: 2384 DLDGNVVHLTSLEAP--LETAEEKKEKITDILDKDYSSEMESFRALAGDSDVEKLKYFVD 2211
            D+DGNVVHLTSL+ P  ++  EE K K +D + ++Y+S +ESFR+++  +D E+L+  ++
Sbjct: 75   DIDGNVVHLTSLDLPPEMDVKEEDKTKTSDNVPQNYTSAIESFRSISSVTDAERLETLIN 134

Query: 2210 QIGLGVNSNDESIVLSPSSDKSHRTAVHNFFKERLTFLVTDTVDGPDSLSKCVRVRLXXX 2031
            Q+  G +     +VL PSSDKS RTA+HNF KE   FLVTDTVDGPDS SKC+RVR+   
Sbjct: 135  QVTSGTDDEISPVVLDPSSDKSKRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSG 194

Query: 2030 XXXXXXXXXXXXXXXXXKPYDCRGSDSWPKDMGKFLRFHLYKENKDTQEALGLLGKMLGI 1851
                             KP+D RGS+ WP+ +GKFLRFHLYKENKDTQEALGL+GKMLG+
Sbjct: 195  AHNNRGNRSKKRKERGDKPFDSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGV 254

Query: 1850 QPRSFGFAGTKDKRSVSTQRVTVFKQRANKLAALNERLIGIKVGNFCYVNEGLVLGQLQG 1671
            QP+SFGF+GTKDKRSVSTQRVTVFKQ+A+KLAALN+RL GIKVG+FC+V EGL+LGQL G
Sbjct: 255  QPKSFGFSGTKDKRSVSTQRVTVFKQQASKLAALNKRLFGIKVGDFCHVKEGLLLGQLMG 314

Query: 1670 NRFTITLRSLGAETEDIIRASATALAKNGFINYFGLQRFGSSSIATHLIGAALLHGEWKA 1491
            NRFTITLR + A++E+ I+ SA +L K+GFINYFGLQRFGS S+ TH +GAALL GEWK 
Sbjct: 315  NRFTITLRGVVADSEETIKKSAESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKD 374

Query: 1490 AVGMILDPREGEKDVTRKIREYYKESGDVEGTLRQLPRHMVAERAILHCFQKCPGNYLQA 1311
            A             V    REYYKE+GD++GTLRQLPR++VAERAIL C +KCPGNYLQA
Sbjct: 375  A------ECSNAWHVVNDAREYYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQA 428

Query: 1310 LSAIPRTLRMMFVHSYQSYLWNHAASMRIQKYGVHQVVLGDLVYCKEQETQKEMTSSHLN 1131
            L  IPRTLRMM+VHSYQSYLWN+AAS+R+ KYG  QVVLGDLV  K  + +K M  S L 
Sbjct: 429  LKGIPRTLRMMYVHSYQSYLWNNAASLRVTKYGTSQVVLGDLVSTK-VDAEKRMVDS-LT 486

Query: 1130 WEDDNGNDTQVDC-HLDDISITDLSEVKSMSVKAICDEDIVAEKYTIDDIVLPLPGSRIT 954
             E +  ++  +DC  +DD ++ DL   +S  VK +  ED+ A  Y   DIVLPLPGSR+ 
Sbjct: 487  SEHNESSEEALDCDQVDDTAVVDLPAERSDLVKVVSIEDLEAGTYLTSDIVLPLPGSRVI 546

Query: 953  YPLNDIGEIYHDLAKKDGISLTESAHNSKEFSLTNMTGAYRRVFQKPKDFEWELLNYKDP 774
            YP NDI EIYHDLAKKDGISLTES H  KEFS+T+MTG YRRVFQKP DFEWELL Y D 
Sbjct: 547  YPSNDIAEIYHDLAKKDGISLTESIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTDS 606

Query: 773  NIPLAETDWDIISKSSSPSTFVRDSDEKEQIKCQADCDNEIELVAGTGETKSDIQIEEES 594
            N PLAETD D I+    P   V  ++E E    ++D  N  E      + ++D + E+E 
Sbjct: 607  NKPLAETDLDRIT-VYKPVDKVGSAEEIEDEPLKSD-TNPHESCETNLKDQTDSK-EDEK 663

Query: 593  LAAASKTQESEMALKLSFTLPASCYATMAIRELLKTSTSVAFHKALN 453
                  +++++MALK++ TLP+SCYATMAIRELLKTSTSVA+HK LN
Sbjct: 664  DTRNPDSEQTQMALKMALTLPSSCYATMAIRELLKTSTSVAYHKTLN 710