BLASTX nr result
ID: Rehmannia22_contig00011803
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00011803
(1038 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-... 301 5e-98
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-... 296 1e-96
gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobrom... 290 3e-94
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [... 286 3e-92
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu... 279 5e-89
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr... 274 6e-89
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-... 272 2e-88
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp.... 265 2e-87
gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus pe... 265 4e-87
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-... 264 1e-86
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps... 263 4e-86
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 261 4e-86
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha... 262 1e-85
gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana] 262 1e-85
ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutr... 259 4e-84
emb|CAD20832.1| sigma factor [Spinacia oleracea] 263 4e-81
gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlise... 261 4e-81
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ... 253 9e-80
ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-... 246 9e-80
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun... 242 3e-78
>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
lycopersicum]
Length = 551
Score = 301 bits (772), Expect(2) = 5e-98
Identities = 144/192 (75%), Positives = 173/192 (90%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
+LE++R+ILEEETGQ+A+ SSWA+AAGI++KELQQHL++GW+CRDELL+STRSLV+++A+
Sbjct: 272 QLERIRSILEEETGQVATFSSWAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLAR 331
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY GLGVAFEDL+QAGNMGVLQGA RFD TRGYKFSTYVQYWIRKS+S LVA+HARGVR+
Sbjct: 332 NYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRI 391
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
P T+ KVINQ+ KARKTLS S GK+P D EIAKFTGLS A+I ASKCLRVV SIDQK+G
Sbjct: 392 PFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVG 451
Query: 541 EGINIKYMEITP 576
+ IN K +E+TP
Sbjct: 452 DCINAKVLELTP 463
Score = 84.3 bits (207), Expect(2) = 5e-98
Identities = 41/64 (64%), Positives = 50/64 (78%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL L+P+E+QVI RFGL +QRKSLEEIGR++ VSKEWIR+IER ALTKLR D +
Sbjct: 486 LLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADYFQH 545
Query: 773 LGHY 784
+ HY
Sbjct: 546 ITHY 549
>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
tuberosum]
Length = 555
Score = 296 bits (759), Expect(2) = 1e-96
Identities = 142/192 (73%), Positives = 172/192 (89%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
+LE++R+ILEEETG++A+ SSWAEAAGI++KELQQ L++GW+CRDELL+STRSLV+++A+
Sbjct: 276 QLERIRSILEEETGRVATFSSWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLAR 335
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY GLGVAFEDL+QAGNMGVLQGA RFD TRGYKFSTYVQYWIRKS+S LVA+HARGVR+
Sbjct: 336 NYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRI 395
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
P T+ KVINQ+ KARKTLS S GK+P D EIAKFTGLS A+I ASKCLRVV SIDQK+G
Sbjct: 396 PFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVG 455
Query: 541 EGINIKYMEITP 576
+ I+ K +E+TP
Sbjct: 456 DCISAKVLELTP 467
Score = 84.7 bits (208), Expect(2) = 1e-96
Identities = 41/64 (64%), Positives = 51/64 (79%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL L+P+E+QVI RFGL +QRKSLEEIGR++ VSKEWIR+IER ALTKLR+ D +
Sbjct: 490 LLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRNADYFQH 549
Query: 773 LGHY 784
+ HY
Sbjct: 550 ITHY 553
>gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
Length = 848
Score = 290 bits (742), Expect(2) = 3e-94
Identities = 138/191 (72%), Positives = 167/191 (87%)
Frame = +1
Query: 4 LEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAKN 183
LE++RT LEEETG+ ASLS WAEAAG+ +K LQQHL +GW+CRDELLRSTRSLV++ A+N
Sbjct: 569 LERIRTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARN 628
Query: 184 YWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRVP 363
Y GLG+A EDL+QAG++GVLQGAERFD TRGY+FSTYVQ+WIRKS+S +VARHARG++VP
Sbjct: 629 YRGLGIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVP 688
Query: 364 CTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIGE 543
CTLS+ I Q+QKARK LS S GKYPD+ IAKFTGLS+AKI SA+KC+RVV SIDQKIG+
Sbjct: 689 CTLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGD 748
Query: 544 GINIKYMEITP 576
+N KY+E P
Sbjct: 749 CMNAKYLEFIP 759
Score = 83.6 bits (205), Expect(2) = 3e-94
Identities = 39/65 (60%), Positives = 52/65 (80%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LLNGL+ RE+QV++LR+GL + KSLEEIGR+F VSKEWIR+IE A+ KLRD++ +
Sbjct: 782 LLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLRDKETCRN 841
Query: 773 LGHYV 787
L HY+
Sbjct: 842 LSHYL 846
>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 560
Score = 286 bits (731), Expect(2) = 3e-92
Identities = 135/192 (70%), Positives = 165/192 (85%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
+LEK+RT LEEET ++ SLS WAEAAG+ K LQQ L +GW+CRDEL++STRSLV++ A+
Sbjct: 280 DLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFAR 339
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY G G+A EDL+QAGN+GVL+GAERFD TRGY+FSTYVQYWIRKSMS +V+R ARG+++
Sbjct: 340 NYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQI 399
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
PCTLS+ I Q+QKARK L+TS GKYPDD EIAK+TGLS+AKI SAS+CLRVV SIDQKIG
Sbjct: 400 PCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVVGSIDQKIG 459
Query: 541 EGINIKYMEITP 576
E +N KY+E P
Sbjct: 460 ESLNAKYLEFLP 471
Score = 80.9 bits (198), Expect(2) = 3e-92
Identities = 37/65 (56%), Positives = 51/65 (78%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL L+ RE+QV+ILRFGL + Q KSLEEIGR F VSKEW+R++E+ +T+LR+E+ +
Sbjct: 494 LLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRN 553
Query: 773 LGHYV 787
L HY+
Sbjct: 554 LRHYI 558
>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| hypothetical protein
POPTR_0006s25090g [Populus trichocarpa]
Length = 559
Score = 279 bits (713), Expect(2) = 5e-89
Identities = 131/192 (68%), Positives = 161/192 (83%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
+LE++RT LEEETGQ+ SLS WAEA G+ KK LQQ L +GW+CRDEL+++T SLV++IA+
Sbjct: 279 DLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIAR 338
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY G+G+A EDL+QAGN+G+LQGAERFD TRGY+FSTYVQYWIRKSM +V RHARG+++
Sbjct: 339 NYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQI 398
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
P LS+ IN++QKARK LS S G+YPDD E+AKFTGLS+AKI SA KCLRVV S+DQKIG
Sbjct: 399 PYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVVASLDQKIG 458
Query: 541 EGINIKYMEITP 576
EG KY E P
Sbjct: 459 EGHYAKYSEFIP 470
Score = 77.0 bits (188), Expect(2) = 5e-89
Identities = 38/67 (56%), Positives = 50/67 (74%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GL+ REKQV++LR+G +NQ KSL EIGR+FRVSKE +RKIE+ + KLRDE +
Sbjct: 493 LLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKLRDEGIRRN 552
Query: 773 LGHYVYM 793
L Y+ +
Sbjct: 553 LSRYMIL 559
>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
gi|557553989|gb|ESR64003.1| hypothetical protein
CICLE_v10007968mg [Citrus clementina]
Length = 534
Score = 274 bits (701), Expect(2) = 6e-89
Identities = 124/191 (64%), Positives = 167/191 (87%)
Frame = +1
Query: 4 LEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAKN 183
LE+++T LE+E+G+ ASL+ WA+AAG+ ++ L+QHL +GW+CR+EL++STR LV+F+A+N
Sbjct: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
Query: 184 YWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRVP 363
Y GLG+ F DL+QAGN+GVLQGAERFD TRGYKFSTYVQYWIRKS+S +VARHARG+++P
Sbjct: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Query: 364 CTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIGE 543
C L++ I+++QKARK L+ S GKYP+D EIAK+TGLS+A+I SAS+CLR+V SIDQKIG+
Sbjct: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
Query: 544 GINIKYMEITP 576
+N KY+E P
Sbjct: 435 CLNAKYLEFAP 445
Score = 81.6 bits (200), Expect(2) = 6e-89
Identities = 35/67 (52%), Positives = 54/67 (80%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
+L L+ RE+QV++LR+GL +++ KSLEEIG++F VSKEWIRK+E+ A+TKLRD + +
Sbjct: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
Query: 773 LGHYVYM 793
L H++ +
Sbjct: 528 LSHFLVL 534
>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
Length = 534
Score = 272 bits (696), Expect(2) = 2e-88
Identities = 123/191 (64%), Positives = 166/191 (86%)
Frame = +1
Query: 4 LEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAKN 183
LE+++T LE+E+G+ A L+ WA+AAG+ ++ L+QHL +GW+CR+EL++STR LV+F+A+N
Sbjct: 255 LERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
Query: 184 YWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRVP 363
Y GLG+ F DL+QAGN+GVLQGAERFD TRGYKFSTYVQYWIRKS+S +VARHARG+++P
Sbjct: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Query: 364 CTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIGE 543
C L++ I+++QKARK L+ S GKYP+D EIAK+TGLS+A+I SAS+CLR+V SIDQKIG+
Sbjct: 375 CKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSLAEIRSASECLRIVGSIDQKIGD 434
Query: 544 GINIKYMEITP 576
+N KY+E P
Sbjct: 435 CLNAKYLEFAP 445
Score = 81.6 bits (200), Expect(2) = 2e-88
Identities = 35/67 (52%), Positives = 54/67 (80%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
+L L+ RE+QV++LR+GL +++ KSLEEIG++F VSKEWIRK+E+ A+TKLRD + +
Sbjct: 468 ILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRD 527
Query: 773 LGHYVYM 793
L H++ +
Sbjct: 528 LSHFLVL 534
>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 265 bits (677), Expect(2) = 2e-87
Identities = 125/193 (64%), Positives = 165/193 (85%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
++E++RT LEEE+G++ASLS WAEAAG+ +K L ++L+YGW+CRDELL+STRSLV+F+A+
Sbjct: 287 DMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLAR 346
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY GLG+A EDL+QAG +GVLQGAERFD TRGYKFSTYVQYWIRKSMS +V+RHARGV +
Sbjct: 347 NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHI 406
Query: 361 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 537
P ++ + INQ+QKARKTL TS G KYP D +I+K T LSV KI +A++CL+VV SI++K+
Sbjct: 407 PSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKV 466
Query: 538 GEGINIKYMEITP 576
G+ + K++E TP
Sbjct: 467 GDCFSTKFLEFTP 479
Score = 85.9 bits (211), Expect(2) = 2e-87
Identities = 42/65 (64%), Positives = 53/65 (81%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GLEPREKQV++LR+GL N + KSLEEIG++ RVSKEWIRKIER A+ KLRD+ +
Sbjct: 502 LLEGLEPREKQVMVLRYGLQNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAED 561
Query: 773 LGHYV 787
L +Y+
Sbjct: 562 LRYYL 566
>gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
Length = 555
Score = 265 bits (677), Expect(2) = 4e-87
Identities = 127/192 (66%), Positives = 160/192 (83%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
+LE+++ LE+ETG++A+L WAEAAG+ +K L QHL +GW+C+DEL+RSTRSLV+++A+
Sbjct: 275 DLERIKETLEKETGKVATLRCWAEAAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLAR 334
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY GLGVA +DL+QAGN+G+LQGAERFD +RGY+FSTYVQYWIRKSMS LVA+HARGV++
Sbjct: 335 NYRGLGVALDDLMQAGNLGLLQGAERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQI 394
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
P TLSK INQ+QKARK S KYPDD EIAK TGLS+A+I SAS CLRVV S+D K+
Sbjct: 395 PFTLSKAINQIQKARKANYNSHMKYPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMW 454
Query: 541 EGINIKYMEITP 576
E + YME TP
Sbjct: 455 ESSDGTYMEFTP 466
Score = 84.7 bits (208), Expect(2) = 4e-87
Identities = 42/65 (64%), Positives = 50/65 (76%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GL RE+QV++LR+GL N KSLEEIGR+F VSKEWIRKIE+ AL KLR E+ K
Sbjct: 489 LLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKLRVEESHKY 548
Query: 773 LGHYV 787
L HY+
Sbjct: 549 LSHYL 553
>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
subsp. vesca]
Length = 545
Score = 264 bits (675), Expect(2) = 1e-86
Identities = 129/200 (64%), Positives = 162/200 (81%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
+LE+L+ LE+ETG++ +L WAEAAG+ +K LQQ L++GW+C+DEL+RSTRSLV+++A+
Sbjct: 264 DLERLKVTLEKETGKVPTLRCWAEAAGVDEKVLQQQLHFGWYCQDELVRSTRSLVLYLAR 323
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY GLGVA +DL+QAGN+G+LQGAERFD +RGY+FSTYVQYWIRKSMS LVA+HARG+++
Sbjct: 324 NYRGLGVALDDLLQAGNLGLLQGAERFDPSRGYRFSTYVQYWIRKSMSRLVAQHARGIKI 383
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
P TLSK IN++QKARK S KYPDD EIAK TGLS+AKI SAS+CLRVV S+D KI
Sbjct: 384 PNTLSKAINRIQKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRCLRVVGSVDHKIW 443
Query: 541 EGINIKYMEITPXXXXXTFE 600
E YME TP T E
Sbjct: 444 ECSAGTYMEFTPDIAVETPE 463
Score = 83.6 bits (205), Expect(2) = 1e-86
Identities = 42/65 (64%), Positives = 50/65 (76%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GL REK+V+ LR+GL KSLEEIGR+F VSKEWIRKIE+ ALTKLR+E+ K
Sbjct: 478 LLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRNEESNKN 537
Query: 773 LGHYV 787
L HY+
Sbjct: 538 LSHYL 542
>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
gi|482559522|gb|EOA23713.1| hypothetical protein
CARUB_v10016920mg [Capsella rubella]
Length = 581
Score = 263 bits (673), Expect(2) = 4e-86
Identities = 125/193 (64%), Positives = 163/193 (84%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
++E++RT LEEE+G++ASLS WAEAAG+ +K L ++L+YGW+CRDELL+STRSLV+F+A+
Sbjct: 300 DMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLAR 359
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY GLG+A EDL+QAG +GVLQGAERFD RGYKFSTYVQYWIRKSMS +V+RHARGV +
Sbjct: 360 NYRGLGIAHEDLIQAGFVGVLQGAERFDHARGYKFSTYVQYWIRKSMSMMVSRHARGVHI 419
Query: 361 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 537
P ++ + INQ+QKARKTL TS G KYP D EI+K T LSV KI +A++CL+VV SI+ K+
Sbjct: 420 PSSIIRTINQIQKARKTLKTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKV 479
Query: 538 GEGINIKYMEITP 576
G+ + K++E TP
Sbjct: 480 GDCFSTKFLEFTP 492
Score = 82.8 bits (203), Expect(2) = 4e-86
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GLEPREKQV++LR+GL + + KSLEEIG++ RVSKEWIR+IER A+ KLRD+ +
Sbjct: 515 LLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWIRRIERRAMAKLRDQPNAED 574
Query: 773 LGHYV 787
L +Y+
Sbjct: 575 LRYYL 579
>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 261 bits (667), Expect(2) = 4e-86
Identities = 124/193 (64%), Positives = 162/193 (83%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
++E++RT LEEE+G++ASLS WA AAG+ +K L ++L+YGW+CRDEL++STRSLV+F+A+
Sbjct: 290 DMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLAR 349
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY G+G+A EDL+QAG +GVLQGAERFD TRGYKFSTYVQYWIRKSMST+V+RHARGV +
Sbjct: 350 NYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHI 409
Query: 361 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 537
P ++ + IN +QKARKTL TS G KY D EIAK TG SV KI +A++CL+VV SID+K+
Sbjct: 410 PSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKV 469
Query: 538 GEGINIKYMEITP 576
G+ K++E TP
Sbjct: 470 GDCFTTKFLEFTP 482
Score = 85.1 bits (209), Expect(2) = 4e-86
Identities = 41/65 (63%), Positives = 54/65 (83%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GLEPREKQV++LR+GL + + KSLEEIG++F+VSKEWIRKIER A+ KLRD+ +
Sbjct: 505 LLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAED 564
Query: 773 LGHYV 787
L +Y+
Sbjct: 565 LRYYL 569
>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
polymerase sigma factor sigC; Short=Sigma factor C;
Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
[Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
[Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC
[Arabidopsis thaliana] gi|133778870|gb|ABO38775.1|
At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit
C [Arabidopsis thaliana]
Length = 571
Score = 262 bits (669), Expect(2) = 1e-85
Identities = 125/193 (64%), Positives = 162/193 (83%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
++E++RT LEEE+G++ASLS WA AAG+ +K L ++L+YGW+CRDEL++STRSLV+F+A+
Sbjct: 290 DMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLAR 349
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY GLG+A EDL+QAG +GVLQGAERFD TRGYKFSTYVQYWIRKSMST+V+RHARGV +
Sbjct: 350 NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHI 409
Query: 361 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 537
P ++ + IN +QKARKTL TS G KY D EIAK TG SV KI +A++CL+VV SID+K+
Sbjct: 410 PSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKV 469
Query: 538 GEGINIKYMEITP 576
G+ K++E TP
Sbjct: 470 GDCFTTKFLEFTP 482
Score = 82.8 bits (203), Expect(2) = 1e-85
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GLEPREKQV++LR+GL + + KSLEEIG++ +VSKEWIRKIER A+ KLRD+ +
Sbjct: 505 LLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAED 564
Query: 773 LGHYV 787
L +Y+
Sbjct: 565 LRYYL 569
>gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
Length = 291
Score = 262 bits (669), Expect(2) = 1e-85
Identities = 125/193 (64%), Positives = 162/193 (83%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
++E++RT LEEE+G++ASLS WA AAG+ +K L ++L+YGW+CRDEL++STRSLV+F+A+
Sbjct: 10 DMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLAR 69
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY GLG+A EDL+QAG +GVLQGAERFD TRGYKFSTYVQYWIRKSMST+V+RHARGV +
Sbjct: 70 NYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHI 129
Query: 361 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 537
P ++ + IN +QKARKTL TS G KY D EIAK TG SV KI +A++CL+VV SID+K+
Sbjct: 130 PSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKV 189
Query: 538 GEGINIKYMEITP 576
G+ K++E TP
Sbjct: 190 GDCFTTKFLEFTP 202
Score = 82.8 bits (203), Expect(2) = 1e-85
Identities = 40/65 (61%), Positives = 53/65 (81%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GLEPREKQV++LR+GL + + KSLEEIG++ +VSKEWIRKIER A+ KLRD+ +
Sbjct: 225 LLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAED 284
Query: 773 LGHYV 787
L +Y+
Sbjct: 285 LRYYL 289
>ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutrema salsugineum]
gi|312281919|dbj|BAJ33825.1| unnamed protein product
[Thellungiella halophila] gi|557104759|gb|ESQ45093.1|
hypothetical protein EUTSA_v10010251mg [Eutrema
salsugineum]
Length = 562
Score = 259 bits (662), Expect(2) = 4e-84
Identities = 122/193 (63%), Positives = 164/193 (84%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
++E++RT LEEE+G++AS+S WAEAAG+ + L ++L+YGW+CRDELL+STRSLV+F+++
Sbjct: 281 DMERIRTKLEEESGKVASMSCWAEAAGMNEILLMRNLHYGWYCRDELLKSTRSLVLFLSR 340
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NY GLG+A EDL+QAGN+GVLQGAERFD TRGYKFSTYVQYWIRKSMS +V+RHARGV +
Sbjct: 341 NYRGLGIAHEDLIQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVYI 400
Query: 361 PCTLSKVINQVQKARKTLSTSTG-KYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKI 537
P ++ + ++Q+QKARKTL TS G KYP D EI+K TG S+ KI +A++CL+VV SID+K+
Sbjct: 401 PSSVIRTMSQIQKARKTLKTSHGIKYPADEEISKETGYSLKKIRAANQCLKVVGSIDKKV 460
Query: 538 GEGINIKYMEITP 576
G+ K++E TP
Sbjct: 461 GDCFTTKFLEFTP 473
Score = 80.5 bits (197), Expect(2) = 4e-84
Identities = 40/65 (61%), Positives = 51/65 (78%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GLEPREKQV++LR+GL + KSLEEIG++ +VSKEWIRKIER A+ KLRD+ +
Sbjct: 496 LLQGLEPREKQVMVLRYGLQGFRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQANAEN 555
Query: 773 LGHYV 787
L Y+
Sbjct: 556 LRFYL 560
>emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 263 bits (673), Expect(2) = 4e-81
Identities = 125/192 (65%), Positives = 159/192 (82%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
+LEK++ LE+ETG+ SL+ WAEAAGI +K LQ L++GW+CRDELL+S RSLV+++++
Sbjct: 269 QLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSR 328
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
Y GLGVA EDL+QAGN+G+LQGAERFD TRGY+FSTYVQYWIRK+MS LV+RH RG++V
Sbjct: 329 YYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKV 388
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
P TLS IN+VQKARK L S GK+PDD E++K TGLS+ KI SA CLR+V S+DQK+G
Sbjct: 389 PTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVG 448
Query: 541 EGINIKYMEITP 576
IN+KY+E TP
Sbjct: 449 HFINMKYLECTP 460
Score = 66.2 bits (160), Expect(2) = 4e-81
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL L+P+E++V+I R+GL SL E+G+VF VSKEWIRK+E+ ALTKLR E
Sbjct: 483 LLQELDPKERRVLIHRYGL-EGHCMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTN 541
Query: 773 LGHYV 787
L HY+
Sbjct: 542 LKHYL 546
>gb|EPS65656.1| hypothetical protein M569_09119, partial [Genlisea aurea]
Length = 463
Score = 261 bits (667), Expect(2) = 4e-81
Identities = 122/191 (63%), Positives = 157/191 (82%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
ELE++R +E+E+G+ S S WAEAA I+ KEL++ L YGWHCRD+LL+S+RSLV+FIA+
Sbjct: 191 ELERIRKKVEDESGETPSFSRWAEAARIESKELKRRLNYGWHCRDQLLKSSRSLVVFIAR 250
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
NYWGLG+AFEDL+QAGNM VL+GAERFDQ+RGYKFSTYVQYWIRKSMS LVA H+RG+R+
Sbjct: 251 NYWGLGIAFEDLIQAGNMAVLRGAERFDQSRGYKFSTYVQYWIRKSMSMLVANHSRGIRI 310
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
P T++KVINQVQ ARK L +TG+ P D E+AK TG+S+ +I SA +C RVV S+D+++G
Sbjct: 311 PGTMNKVINQVQNARKQLCAATGRTPSDLEVAKLTGISLERIRSAGRCPRVVGSVDRRVG 370
Query: 541 EGINIKYMEIT 573
ME+T
Sbjct: 371 NPPGTLLMEVT 381
Score = 68.6 bits (166), Expect(2) = 4e-81
Identities = 32/55 (58%), Positives = 46/55 (83%), Gaps = 2/55 (3%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLG--NNQRKSLEEIGRVFRVSKEWIRKIERTALTKLR 751
++ GLE RE++V++LRFGLG + ++KSL+EIG++ VSKEW+R+IE TAL KLR
Sbjct: 405 MVRGLEWREREVLVLRFGLGRRDGEKKSLQEIGKILCVSKEWVRRIETTALAKLR 459
>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine
max]
Length = 551
Score = 253 bits (645), Expect(2) = 9e-80
Identities = 118/192 (61%), Positives = 162/192 (84%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
ELEK+RT +EE+T ++ASLS+WAEA+G+ +K LQ+ L+ G++C+DEL+RSTRSLV+++A+
Sbjct: 271 ELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLAR 330
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
Y G+G+A +DL+QAG +GVLQGAERFD TRGYKFSTYVQYWIRKS+ +VAR+ARG+ +
Sbjct: 331 KYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVI 390
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
P +L++ INQ+QKARK + ++ K PDD EIAK TGLS+ KI SAS CLR+V SIDQK+G
Sbjct: 391 PWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVG 450
Query: 541 EGINIKYMEITP 576
+ + ++YME+ P
Sbjct: 451 DYLGVEYMELLP 462
Score = 72.4 bits (176), Expect(2) = 9e-80
Identities = 35/65 (53%), Positives = 51/65 (78%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
LL GL RE++++ LRFGL +NQ +SL++IG +F+VSKE IRKIE+ ALTKL++E +
Sbjct: 485 LLKGLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISK 544
Query: 773 LGHYV 787
L +Y+
Sbjct: 545 LHYYL 549
>ref|XP_004498453.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cicer arietinum]
Length = 545
Score = 246 bits (627), Expect(2) = 9e-80
Identities = 116/188 (61%), Positives = 157/188 (83%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
ELEK++T +EE+T Q SLSSWAEA+G+ + LQ+ LY+G++CRDEL+RSTRSLV++ A+
Sbjct: 266 ELEKMKTAIEEDTKQAVSLSSWAEASGVDENVLQRQLYHGYYCRDELIRSTRSLVLYFAR 325
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
Y G+G+A EDL+Q G +GVLQGAERFD TRGY+FSTYVQYWIRKSMS +VAR+ARG+ +
Sbjct: 326 KYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVARYARGITI 385
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSIDQKIG 540
P +++K I+Q+QKARK L +++ KYPDD EIAK TGLS+ +I SAS C+R+V S++QK+G
Sbjct: 386 PWSMNKAISQIQKARKLLKSTSMKYPDDHEIAKMTGLSLDRIRSASHCMRIVSSMNQKMG 445
Query: 541 EGINIKYM 564
+ I+YM
Sbjct: 446 DR-GIEYM 452
Score = 79.3 bits (194), Expect(2) = 9e-80
Identities = 37/65 (56%), Positives = 52/65 (80%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNNQRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLKI 772
+L L+ RE+Q++ILRFGL ++Q KSLE IG++++VSKEWIRKIE+ ALTKLR+E
Sbjct: 479 ILQSLDSRERQILILRFGLNDHQPKSLEYIGKIYKVSKEWIRKIEKKALTKLRNEANTSK 538
Query: 773 LGHYV 787
L +Y+
Sbjct: 539 LNYYL 543
>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B
factor [Medicago truncatula]
Length = 549
Score = 242 bits (617), Expect(2) = 3e-78
Identities = 114/175 (65%), Positives = 147/175 (84%)
Frame = +1
Query: 1 ELEKLRTILEEETGQIASLSSWAEAAGIKKKELQQHLYYGWHCRDELLRSTRSLVMFIAK 180
ELEK+RT +EE+T Q+ SLSSWAE +G+ +K LQQ LY+G++CRDEL+RSTRSLV++ A+
Sbjct: 274 ELEKIRTAIEEDTKQVVSLSSWAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFAR 333
Query: 181 NYWGLGVAFEDLVQAGNMGVLQGAERFDQTRGYKFSTYVQYWIRKSMSTLVARHARGVRV 360
Y G+G+A EDL+Q G +GVLQGAERFD T+GY+FSTYVQYWIRKSMS +VA++ARG+ V
Sbjct: 334 KYRGMGIALEDLLQVGYIGVLQGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITV 393
Query: 361 PCTLSKVINQVQKARKTLSTSTGKYPDDSEIAKFTGLSVAKIMSASKCLRVVRSI 525
P +++K I+Q+QKARK L +T KYP+D EIAK TGLS+ KIMSAS CLR V S+
Sbjct: 394 PWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSM 448
Score = 78.2 bits (191), Expect(2) = 3e-78
Identities = 39/66 (59%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Frame = +2
Query: 593 LLNGLEPREKQVIILRFGLGNN-QRKSLEEIGRVFRVSKEWIRKIERTALTKLRDEDCLK 769
+L L+ RE+Q+IILRFGL ++ Q KSLE IG++F+VSKEWIRKIE+ ALTKLR+E +
Sbjct: 482 ILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRKIEKKALTKLRNETNIS 541
Query: 770 ILGHYV 787
L +Y+
Sbjct: 542 KLNYYL 547