BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00011730
         (540 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bart...   102   4e-20
ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) ...   102   4e-20
gb|ADX99122.1| RNA polymerase beta II subunit [Casselia glaziovii]    102   6e-20
gb|ADX99109.1| RNA polymerase beta II subunit [Aloysia citrodora]     102   6e-20
gb|ADX99108.1| RNA polymerase beta II subunit [Acantholippia sal...   101   1e-19
gb|ADX99121.1| RNA polymerase beta II subunit [Citharexylum ligu...   101   1e-19
gb|ADX99120.1| RNA polymerase beta II subunit [Baillonia amabilis]    101   1e-19
gb|ADX99119.1| RNA polymerase beta II subunit [Citharexylum mont...   101   1e-19
gb|ADX99116.1| RNA polymerase beta II subunit [Rhaphithamnus ven...   101   1e-19
ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) ...   100   2e-19
ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans...   100   2e-19
gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Orig...   100   2e-19
ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ...   100   2e-19
ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in...   100   2e-19
ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygro...   100   2e-19
ref|YP_004465176.1| RNA polymerase beta' subunit [Jacobaea vulga...   100   2e-19
gb|ADX99127.1| RNA polymerase beta II subunit [Recordia boliviana]    100   2e-19
gb|ADX99126.1| RNA polymerase beta II subunit [Duranta serratifo...   100   2e-19
gb|ADX99125.1| RNA polymerase beta II subunit [Stachytarpheta ca...   100   2e-19
gb|ADX99124.1| RNA polymerase beta II subunit [Bouchea fluminensis]   100   2e-19

>gb|AHH30431.1| RNA polymerase beta'' subunit (chloroplast) [Bartsia inaequalis]
          Length = 1384

 Score =  102 bits (255), Expect = 4e-20
 Identities = 51/53 (96%), Positives = 52/53 (98%)
 Frame = +3

Query: 3    TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
            TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 1173 TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 1225


>ref|YP_008815927.1| RNA polymerase beta'' subunit (chloroplast) [Lindenbergia
            philippensis] gi|557136853|emb|CDI43908.1| RNA polymerase
            beta'' subunit (chloroplast) [Lindenbergia philippensis]
          Length = 1368

 Score =  102 bits (255), Expect = 4e-20
 Identities = 51/53 (96%), Positives = 52/53 (98%)
 Frame = +3

Query: 3    TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
            TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 1171 TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 1223


>gb|ADX99122.1| RNA polymerase beta II subunit [Casselia glaziovii]
          Length = 673

 Score =  102 bits (254), Expect = 6e-20
 Identities = 54/62 (87%), Positives = 55/62 (88%), Gaps = 2/62 (3%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS--YLSLN 176
           TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+   L L 
Sbjct: 508 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSRVLVLE 567

Query: 177 DG 182
           DG
Sbjct: 568 DG 569


>gb|ADX99109.1| RNA polymerase beta II subunit [Aloysia citrodora]
          Length = 700

 Score =  102 bits (254), Expect = 6e-20
 Identities = 54/62 (87%), Positives = 55/62 (88%), Gaps = 2/62 (3%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS--YLSLN 176
           TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+   L L 
Sbjct: 530 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVLE 589

Query: 177 DG 182
           DG
Sbjct: 590 DG 591


>gb|ADX99108.1| RNA polymerase beta II subunit [Acantholippia salsoloides]
          Length = 701

 Score =  101 bits (252), Expect = 1e-19
 Identities = 54/62 (87%), Positives = 55/62 (88%), Gaps = 2/62 (3%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS--YLSLN 176
           TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+   L L 
Sbjct: 531 TRILGMPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVLE 590

Query: 177 DG 182
           DG
Sbjct: 591 DG 592


>gb|ADX99121.1| RNA polymerase beta II subunit [Citharexylum ligustrinum]
          Length = 703

 Score =  101 bits (251), Expect = 1e-19
 Identities = 50/53 (94%), Positives = 52/53 (98%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
           TRILGMPW+FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 533 TRILGMPWSFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 585


>gb|ADX99120.1| RNA polymerase beta II subunit [Baillonia amabilis]
          Length = 479

 Score =  101 bits (251), Expect = 1e-19
 Identities = 50/53 (94%), Positives = 52/53 (98%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
           TRILGMPW+FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 378 TRILGMPWSFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 430


>gb|ADX99119.1| RNA polymerase beta II subunit [Citharexylum montevidense]
          Length = 287

 Score =  101 bits (251), Expect = 1e-19
 Identities = 50/53 (94%), Positives = 52/53 (98%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
           TRILGMPW+FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 118 TRILGMPWSFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 170


>gb|ADX99116.1| RNA polymerase beta II subunit [Rhaphithamnus venustus]
          Length = 697

 Score =  101 bits (251), Expect = 1e-19
 Identities = 51/57 (89%), Positives = 53/57 (92%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQISYLSL 173
           TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+  +L
Sbjct: 531 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKAL 587


>ref|YP_008964857.1| RNA polymerase beta'' subunit (chloroplast) [Schwalbea americana]
            gi|560176690|emb|CDJ38609.1| RNA polymerase beta''
            subunit (chloroplast) [Schwalbea americana]
          Length = 1382

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/52 (96%), Positives = 51/52 (98%)
 Frame = +3

Query: 6    RILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
            RILGMPWTFLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 1173 RILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 1224


>ref|YP_008964024.1| RNA polymerase beta'' subunit [Ajuga reptans]
            gi|558697185|gb|AHA84940.1| RNA polymerase beta'' subunit
            [Ajuga reptans]
          Length = 1377

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +3

Query: 3    TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
            TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 1175 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 1227


>gb|AFV61804.1| RNA polymerase beta'' subunit (chloroplast) [Origanum vulgare subsp.
            vulgare]
          Length = 1397

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +3

Query: 3    TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
            TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 1184 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 1236


>ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
            gi|401879732|gb|AFQ30919.1| RNA polymerase beta subunit-2
            (chloroplast) [Salvia miltiorrhiza]
            gi|573461941|emb|CCQ71610.1| RNA polymerase beta''
            subunit (chloroplast) [Salvia miltiorrhiza]
          Length = 1395

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +3

Query: 3    TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
            TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 1182 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 1234


>ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
            gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit
            (chloroplast) [Sesamum indicum]
            gi|496538591|gb|AGL45326.1| RpoC2 (chloroplast) [Sesamum
            indicum]
          Length = 1390

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +3

Query: 3    TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
            TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 1179 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 1231


>ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygrometrica]
            gi|340549397|gb|AEK53219.1| RNA polymerase beta'' subunit
            (chloroplast) [Boea hygrometrica]
          Length = 1381

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +3

Query: 3    TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
            TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 1170 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 1222


>ref|YP_004465176.1| RNA polymerase beta' subunit [Jacobaea vulgaris]
            gi|308156071|gb|ADO15399.1| RNA polymerase beta' subunit
            [Jacobaea vulgaris]
          Length = 1380

 Score =  100 bits (250), Expect = 2e-19
 Identities = 49/53 (92%), Positives = 52/53 (98%)
 Frame = +3

Query: 3    TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
            TRILG+PWTFLIGAELTIVQSRISLVNK+QKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 1171 TRILGIPWTFLIGAELTIVQSRISLVNKVQKVYRSQGVQIHNRHIEIIVRQIT 1223


>gb|ADX99127.1| RNA polymerase beta II subunit [Recordia boliviana]
          Length = 404

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
           TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 320 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 372


>gb|ADX99126.1| RNA polymerase beta II subunit [Duranta serratifolia]
          Length = 678

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
           TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 508 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 560


>gb|ADX99125.1| RNA polymerase beta II subunit [Stachytarpheta cayennensis]
          Length = 683

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
           TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 518 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 570


>gb|ADX99124.1| RNA polymerase beta II subunit [Bouchea fluminensis]
          Length = 688

 Score =  100 bits (250), Expect = 2e-19
 Identities = 50/53 (94%), Positives = 51/53 (96%)
 Frame = +3

Query: 3   TRILGMPWTFLIGAELTIVQSRISLVNKIQKVYRSHGVQIHNRHIEIIVRQIS 161
           TRILGMPW FLIGAELTIVQSRISLVNKIQKVYRS GVQIHNRHIEIIVRQI+
Sbjct: 518 TRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQIT 570