BLASTX nr result
ID: Rehmannia22_contig00009114
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00009114
(4073 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ11389.1| hypothetical protein PRUPE_ppa017790mg [Prunus pe... 1195 0.0
gb|EMJ08431.1| hypothetical protein PRUPE_ppa026856mg [Prunus pe... 1170 0.0
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 1160 0.0
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera] 1145 0.0
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 1136 0.0
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 1134 0.0
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 1113 0.0
gb|EMJ21939.1| hypothetical protein PRUPE_ppa023598mg [Prunus pe... 1108 0.0
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 1093 0.0
gb|EOX95569.1| DNA/RNA polymerases superfamily protein [Theobrom... 1091 0.0
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 1075 0.0
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 1068 0.0
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 1067 0.0
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 1066 0.0
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 1063 0.0
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 1060 0.0
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 1054 0.0
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 1051 0.0
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 1020 0.0
gb|EMJ22494.1| hypothetical protein PRUPE_ppa024499mg, partial [... 993 0.0
>gb|EMJ11389.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
Length = 1485
Score = 1195 bits (3092), Expect = 0.0
Identities = 627/1349 (46%), Positives = 847/1349 (62%), Gaps = 45/1349 (3%)
Frame = +1
Query: 151 DLRAQNQHIMDMLAGQFAAGRGVTHNAPRGPDRGIGVAPXXXXXXXXXXXXXXNPFAQFA 330
DL AQN+ I D L QF R + A G +R G NP ++
Sbjct: 16 DLDAQNRRI-DNLTNQFGEMRELLLQALGGNNRREGRDNERRDGERRDNMRQLNPDSESE 74
Query: 331 HKDDLR-----GDNGKHDDSRRWE----HSFKIDIPEFHGTLDADEFLDWMVSVDEILDF 483
+++L +N +H + R +E + K +IP F G L ++FLDW+V V+ D
Sbjct: 75 SEEELEEPPPPANNPRHHN-RNYENFGDYRIKAEIPNFWGNLKIEDFLDWLVEVERFFDI 133
Query: 484 KDVPADRRVALVVTRLRGRASAWWQQLKTMRSRQSKPKLTSWDKFKTKLRNEFLPFNYSR 663
+VP + V +V RL+ A+ WW QL+ +R RQ K ++ +W K K+ + +FLP +Y +
Sbjct: 134 MEVPEHKMVKMVAFRLKATAAVWWDQLQNLRQRQGKQRVRTWRKMKSLMMEQFLPTDYEQ 193
Query: 664 TLYQKFQQLRQGSRTIDAYSDEFYQLLVRSDVRETDDQLVSRYIGGLRLQYQD------- 822
LY+ + QG+ ++ Y++EF +L R+ + ETD+Q V+RY GL++ Q+
Sbjct: 194 ILYRMYLGCAQGTHSVSEYTEEFMRLAERNHLTETDNQKVARYNNGLKISIQEKIGMQNI 253
Query: 823 -----VLNMFSPSSVSEAHQRAVLYEKQLLRRSPFPLPSSGNHFDRSPTGSQIKPAPTLP 987
+NM + + E +R + + S + +S D+ Q T P
Sbjct: 254 WTLQEAINMALKAELLEKEKRQPNFRRNTTEASDYTAGASSGAGDKGKAQQQSSGGMTKP 313
Query: 988 S----------GSRAQGDLGFLXXXXXXXXXXXXXXXXCFNCGDPSHLQSACPKRASTRA 1137
+ GS + G C+ C P H + CP+ +A
Sbjct: 314 TTVGQNKNFNEGSSRNYNRG-QPRNQSQNLYAKPMTDICYRCQKPGHRSNVCPELK--QA 370
Query: 1138 LYVDDVCDADFSSSPVYDDDISAQPPEEFL--HGDVGQLLVLQRVCLTPRREDDDSMQRH 1311
++++ D D + V ++D + EF G LVLQRV L PR E QRH
Sbjct: 371 NFIEEA-DEDEENDEVGENDYAGA---EFAVEEGMEKITLVLQRVLLAPREEG----QRH 422
Query: 1312 KLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVT 1491
+F S C+++ K+C I+D+GSCEN V+ ++ L LSTEPH +PYSL W+++ + V
Sbjct: 423 SIFRSLCSIKNKVCDVIVDNGSCENFVSKKLVEYLQLSTEPHVSPYSLGWVKKGPSVRVA 482
Query: 1492 RRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVT 1671
+ SIG Y D V CDV+ MDACH+LLGRPWQ+D GR N F ++ K+
Sbjct: 483 ETCRVPLSIGKHYRDEVLCDVIDMDACHILLGRPWQFDVDATFKGRDNVILFSWNNRKIA 542
Query: 1672 LLXXXXXXXXTDAHPRVLSISYSAFARAMDASSFVLLLVS--------RDVSESPNVPSV 1827
+ T P S+ +SSF+ L+ + ++ ++P
Sbjct: 543 M---------TTTQPSKPSVEVKT-----RSSSFLTLISNEQELNEAVKEAEGEGDIPQD 588
Query: 1828 VAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEE 2007
V +LS+F ++F + LP LPP+R IQH+ID +PGA L N PHYRMSP E++ LR QIEE
Sbjct: 589 VQQILSQFQELFSENLPNELPPMRDIQHRIDLVPGASLQNLPHYRMSPKENDILREQIEE 648
Query: 2008 LLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGG 2187
LL +G IRESLSPCAVP LL+PKKD WRMCVDSRA+NKITV+Y FPIPRL+D+LD L G
Sbjct: 649 LLRKGFIRESLSPCAVPVLLVPKKDKTWRMCVDSRAINKITVKYRFPIPRLEDMLDVLSG 708
Query: 2188 ATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLR 2367
+ VFSK+DL+SGYHQIRIRPGDEWKTAFK+++GLFEWLVMPFGLSN PSTFMR+MNQ LR
Sbjct: 709 SKVFSKIDLRSGYHQIRIRPGDEWKTAFKSKDGLFEWLVMPFGLSNTPSTFMRLMNQVLR 768
Query: 2368 PLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYR 2547
P IGS VVVYFDDIL+YS + +HL HLR VL +LR + KC F T +LFLG+
Sbjct: 769 PFIGSFVVVYFDDILIYSTTKEEHLVHLRQVLDVLRENKLFVNLKKCTFCTNKLLFLGFV 828
Query: 2548 VSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDLMHGKS 2727
V GI VDD KI AI DWP P T++EVRSFHGLA+FYRRF+ HFS+I+APIT+ +
Sbjct: 829 VGEHGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFYRRFVRHFSSIVAPITECLKKGR 888
Query: 2728 FSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSE 2907
FSW + +F DIK KL AP+LALP+F FE+ DAS VG+GAVLSQ P+A+FSE
Sbjct: 889 FSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGVGAVLSQDKRPVAFFSE 948
Query: 2908 KLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAW 3087
KL+ R ++STYD EFYAVVRA++ W HYL +EF+L+TDH+ALK+INSQ ++ HA W
Sbjct: 949 KLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLFTDHQALKYINSQKNIDKMHARW 1008
Query: 3088 SAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILS 3267
FLQ+F+FV+KH SG TN+VADALSRR SLL+ + EV GF+ +ELY D+ F I +
Sbjct: 1009 VTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQEVVGFECLKELYEGDADFGEIWT 1068
Query: 3268 SLARGD-ASDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQ 3435
+ +D+ L++G+LFKG LC+P+ SLR +L+ +LH +GH+GRD++I + +
Sbjct: 1069 KCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIRDLHGGGLSGHLGRDKTIAGMEER 1128
Query: 3436 YFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRG 3615
++WP L+RDV V +C CQ SKG N GLY PLP+P+ W L+MDFVLGLPRTQRG
Sbjct: 1129 FYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGLPRTQRG 1188
Query: 3616 HDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFW 3795
DS+FVVVDRFSKM HFI C+++ADA ++A+LFFREV RLHG+P SI SDRDT+FLSHFW
Sbjct: 1189 VDSVFVVVDRFSKMAHFIACRKTADASNIAKLFFREVVRLHGVPTSITSDRDTKFLSHFW 1248
Query: 3796 RSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNL 3975
+LW + T L+ SS HPQTDGQTEV NR+LGN++R + G+ P+ WD L Q EFA+N
Sbjct: 1249 ITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQVEFAYNS 1308
Query: 3976 ALNRSTGLSPFQVVYGFLPRAPVDLLTLP 4062
A++ +TG SPF +VY +P VDL+ LP
Sbjct: 1309 AVHSATGKSPFSIVYTAMPNHVVDLVKLP 1337
>gb|EMJ08431.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
Length = 1493
Score = 1170 bits (3028), Expect = 0.0
Identities = 604/1268 (47%), Positives = 805/1268 (63%), Gaps = 32/1268 (2%)
Frame = +1
Query: 355 NGKHDDSRRWE----HSFKIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVV 522
N + +R +E + K +IP F G L ++FLDW+V V+ D +VP + V +V
Sbjct: 98 NNPRNHNRNYENFGDYRIKAEIPNFWGNLKIEDFLDWLVEVERFFDIMEVPEHKMVKMVA 157
Query: 523 TRLRGRASAWWQQLKTMRSRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGS 702
RL+ A+ WW QL+ +R RQ K ++ +W K K+ + FLP +Y + LY+ + QG+
Sbjct: 158 FRLKATAAVWWDQLQNLRQRQGKQRVRTWRKMKSLMMERFLPTDYEQILYRMYLGCAQGT 217
Query: 703 RTIDAYSDEFYQLLVRSDVRETDDQLVSRYIGGLRLQYQD------------VLNMFSPS 846
R++ Y++EF +L R+ + ETD+Q V+RY GL+ Q+ +NM +
Sbjct: 218 RSVSEYTEEFMRLAERNHLTETDNQKVARYNNGLKSSIQEKIGMQNIWTLQEAINMALKA 277
Query: 847 SVSEAHQRAVLYEKQLLRRSPFPLPSSGNHFDRSP-----TGSQIKPAPT-----LPSGS 996
+ E +R + + S + +S D+ +G KPA GS
Sbjct: 278 ELLEKEKRQPNFRRNKTEASDYTAGASSGAGDKEKAQQQNSGGMTKPATVGQNKNFNEGS 337
Query: 997 RAQGDLGFLXXXXXXXXXXXXXXXXCFNCGDPSHLQSACPKRASTRALYVDDVCDADFSS 1176
+ G C+ C P H + CP+R +A ++++ D D
Sbjct: 338 SRNYNRG-QPRNQSQNPYAKPMTDICYRCQKPGHRSNVCPERK--QANFIEEA-DEDEEK 393
Query: 1177 SPVYDDDISAQPPEEFL--HGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKI 1350
V ++D + EF G LVLQRV L P+ E QRH +F S C+++ K+
Sbjct: 394 DEVGENDYAGA---EFAVEEGIEKITLVLQRVLLAPKEEG----QRHNIFRSLCSIKNKV 446
Query: 1351 CRFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKY 1530
C I+D+GSCEN V+ ++ L LSTEPH +PYSL W+++ + V + SIG Y
Sbjct: 447 CDVIVDNGSCENFVSKKLVEYLQLSTEPHVSPYSLGWVKKGPSVRVAETCRVPLSIGKHY 506
Query: 1531 TDSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDA 1710
D V CDV+ MDACH+LLGRPWQ+D GR N F ++ K+ + T
Sbjct: 507 RDDVLCDVIDMDACHILLGRPWQFDVDATFKGRDNVILFSWNNRKIAMA--------TTQ 558
Query: 1711 HPRVLSISYSAFARAMDASSFVLLLVSRDVSESPNVPSVVAPLLSEFADIFPDELPPGLP 1890
R + S+F + + V E ++P V +LS+F ++ + LP LP
Sbjct: 559 PSRKQELRSSSFLTLISNEQELNEAVKEAEGEG-DIPQDVQQILSQFQELLSENLPNELP 617
Query: 1891 PLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLI 2070
P+R IQH+ID + GA LPN PHYRMSP E++ LR QIEELL +G IRESLSPCAVP LL+
Sbjct: 618 PMRDIQHRIDLVHGASLPNLPHYRMSPKENDILREQIEELLRKGFIRESLSPCAVPVLLV 677
Query: 2071 PKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPG 2250
PKKD WRMCVDSRA+NKI V+Y F IPRL+D+LD L G+ VFSK+DL+SGYHQIRIRPG
Sbjct: 678 PKKDKTWRMCVDSRAVNKIKVKYRFSIPRLEDILDVLSGSKVFSKIDLRSGYHQIRIRPG 737
Query: 2251 DEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSV 2430
DEWKTAFK+++GLFEWLVMPFGLSNAPSTFMR+MNQ LRP IGS VVVYFDDIL+YS +
Sbjct: 738 DEWKTAFKSKDGLFEWLVMPFGLSNAPSTFMRLMNQVLRPFIGSFVVVYFDDILIYSTTK 797
Query: 2431 HDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPV 2610
+HL HLR VL +LR Y KC F T +LFLG+ V GI VDD KI AI DWP
Sbjct: 798 EEHLVHLRQVLDVLRENKLYVNLKKCTFCTNKLLFLGFVVGENGIQVDDEKIKAILDWPA 857
Query: 2611 PTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHA 2790
P T++EVRSFHGLA+FY RF+ HFS+I APIT+ + FSW + +F DIK KL A
Sbjct: 858 PKTVSEVRSFHGLATFYMRFVRHFSSIAAPITECLKKGRFSWGEEQERSFADIKEKLCTA 917
Query: 2791 PLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVR 2970
P+LALP+F FE+ DAS VG+GAVL Q P+A+FSEKL+ R ++STYD EFYAVVR
Sbjct: 918 PVLALPNFEKVFEVECDASGVGVGAVLLQDKRPVAFFSEKLSDARQKWSTYDQEFYAVVR 977
Query: 2971 AIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKV 3150
A++ W HYL +EF+L+TDH+ALK+INSQ ++ HA W FLQ+F+FV+KH SG TN+V
Sbjct: 978 ALKQWEHYLIQKEFVLFTDHQALKYINSQKNIDKMHARWVTFLQKFSFVIKHTSGKTNRV 1037
Query: 3151 ADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLARGD-ASDFILHDGFLFKG 3327
ADALSRR SLL+ + EV GF+ +ELY D F+ I + + +D+ L +G+LFKG
Sbjct: 1038 ADALSRRASLLITLTQEVVGFECLKELYEGDDDFREIWTKCTNQEPMTDYFLTEGYLFKG 1097
Query: 3328 ICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQ 3498
LC+P+ SLR +L+ +LH +GH+GRD++I + +++WP L+RDV V +C CQ
Sbjct: 1098 NQLCIPVSSLREKLIRDLHGGGLSGHLGRDKTIAGMEERFYWPQLKRDVGTIVRKCYTCQ 1157
Query: 3499 VSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCK 3678
SKG N GLY PLP+P+ W L+MDFVLG PRTQR DS+FVV DRFSKM HFI CK
Sbjct: 1158 TSKGQVQNTGLYMPLPVPNDIWQDLAMDFVLGFPRTQRRVDSVFVVADRFSKMAHFIACK 1217
Query: 3679 RSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQT 3858
++ADA ++A+LFFREV RLHG+P SI SDRDT+FLSHFW +LW + T L+ SS HPQT
Sbjct: 1218 KTADASNIAKLFFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQT 1277
Query: 3859 DGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRA 4038
DGQTEV NR+LGN++R + G+ P+ WD L Q EFA+N A++ +TG SPF +VY P
Sbjct: 1278 DGQTEVTNRTLGNMVRSVCGEKPKQWDYALPQMEFAYNSAVHSATGKSPFSIVYTATPNH 1337
Query: 4039 PVDLLTLP 4062
VDL+ LP
Sbjct: 1338 VVDLVKLP 1345
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 1160 bits (3000), Expect = 0.0
Identities = 596/1252 (47%), Positives = 803/1252 (64%), Gaps = 26/1252 (2%)
Frame = +1
Query: 385 EHSFKIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQL 564
+ K++IPEF G+L+ D+ L+W+ V++I ++K+ + + V +L+G AS W+ L
Sbjct: 87 DRHIKVEIPEFSGSLNPDDLLEWIRDVEKIFEYKNYNDVKACKVAVLKLKGYASLWYDNL 146
Query: 565 KTMRSRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLL 744
K R ++ K L SW K K K+ +F+ +Y++ L+ K L+Q +T++AY EF QL
Sbjct: 147 KHQRLKEGKDPLRSWSKLKKKMLAKFVTKDYTQDLFIKLSNLKQKEKTVEAYLREFEQLT 206
Query: 745 VRSDVRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLLRRSPFPLPS 924
++ ++ E +Q ++R++ GL + M S + ++ EK + P+ +
Sbjct: 207 LQCEINEKSEQRIARFLEGLDKNIAAEVRMQPLWSYDDVVNLSLRVEKMGKTK---PVAT 263
Query: 925 SGNHFDRSPTGSQIKPAPTLPSGSRAQGDLGFLXXXXXXXXXXXXXXXXCFNCGDPSHLQ 1104
R + +I P S D G CF C H +
Sbjct: 264 RPKPVFRPYSSVKINDPPKTTPQSTV--DKGKAPMNPKINPPLSRDKIKCFQCQGFGHFR 321
Query: 1105 SACPKRASTRALYVDDVCDADFSSSPVYDDDIS-----------AQPPEEFLHGDVGQLL 1251
CP S R L +V + + Y++D + P + H D G L
Sbjct: 322 KDCP---SARTLTAIEVAEWEREGLVEYEEDEALVLEEVESEKETSPDQIVAHPDTGHSL 378
Query: 1252 VLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLSTE 1431
L RV + ++ ++ QR +F S CTVQG++C II+ GSC NV + + KL L T+
Sbjct: 379 FLWRV-MHSQQAPLEADQRSMIFRSRCTVQGRVCNLIINGGSCTNVASTTMVSKLGLPTQ 437
Query: 1432 PHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVV-PMDACHLLLGRPWQYDR 1608
HP PY L WL +D+ + V ++ +++FSIG Y D V CDVV PMDACHLLLGRPW+YDR
Sbjct: 438 EHPNPYKLRWLSKDSGVRVDKQCIISFSIGKMYKDEVLCDVVVPMDACHLLLGRPWEYDR 497
Query: 1609 GVIHDGRQNTYSFLFHGVKVTL--LXXXXXXXXTDAHPR----VLSISYSAFARAMDASS 1770
H G+ N Y F G KVTL L + P VL +S +A + + +
Sbjct: 498 NTTHQGKDNVYIFKHQGKKVTLTPLPPNQRDYGSPNVPEEMSGVLFLSEAAMIKEIRQAQ 557
Query: 1771 FVLLLVSRDVSESPN--VPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLP 1944
VL+L+SR+V++ N VP+ VAPL+ F ++FPDELP GLPPLR I+H ID +PG+ LP
Sbjct: 558 PVLMLLSREVNQEENTVVPTAVAPLIQRFQEVFPDELPSGLPPLRGIEHHIDLVPGSVLP 617
Query: 1945 NRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNK 2124
N+P YR P+ +EL+ QIEEL+ +G +RESLSPCAVPALL+PKKDG WRMC DSRA+N
Sbjct: 618 NKPAYRCDPNATKELQHQIEELMAKGFVRESLSPCAVPALLVPKKDGTWRMCTDSRAINN 677
Query: 2125 ITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLV 2304
ITV+Y FPIPRLDD+LD+L GA++FSK+DL+ GYHQ+RIR GDEWKTAFKT+ GL+EWLV
Sbjct: 678 ITVKYRFPIPRLDDMLDELSGASIFSKIDLRQGYHQVRIREGDEWKTAFKTKHGLYEWLV 737
Query: 2305 MPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTEC 2484
MPFGLSNAPSTFMR+M + LRP +G VVYFDDILVYSK+ +HL HL V ILR +
Sbjct: 738 MPFGLSNAPSTFMRLMTEVLRPCLGKFAVVYFDDILVYSKTKGEHLKHLEVVFKILREQK 797
Query: 2485 FYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYR 2664
Y KC F+ E V FLGY +S GI VD IAA+Q WP PTT+TEVRSFHGLASFYR
Sbjct: 798 LYGKLEKCTFMVEEVAFLGYLISGRGISVDQENIAAMQSWPTPTTVTEVRSFHGLASFYR 857
Query: 2665 RFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDA 2844
RFI +FST++APIT+ M F W QA +F IK + + P+L LPDF FE+ DA
Sbjct: 858 RFIKNFSTVVAPITECMRKGEFQWTEQAQQSFEKIKQLMCNTPILKLPDFDQLFEVECDA 917
Query: 2845 SKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYT 3024
S VGIGAVL Q P+AYFSEKLN + +YSTYD EFYA++RA+ HW HYL + F+L++
Sbjct: 918 SGVGIGAVLIQSQKPVAYFSEKLNGAKLKYSTYDKEFYAIIRALMHWNHYLKPKPFVLHS 977
Query: 3025 DHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEV 3204
DHEALK+IN Q L+ RHA W FLQ FTF K++ G N VADALSRRHSLL M V
Sbjct: 978 DHEALKYINGQHKLNFRHAKWVEFLQSFTFSSKYKEGKKNVVADALSRRHSLLSVMSNRV 1037
Query: 3205 PGFDSFRELYATDSFFK---IILSSLARGDASDFILHDGFLFKGICLCVPMCSLRLRLVA 3375
GF+ +ELY D F I + + S ++L +GFLF+G LCVP S R L+
Sbjct: 1038 LGFEFMKELYKEDPDFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCVPRGSYRDLLIR 1097
Query: 3376 ELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLP 3546
E+HS GH G +++++++ Q++WP + DV + RC CQ+SK +S G Y PLP
Sbjct: 1098 EVHSGGMGGHFGVQKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSK-SSFQPGPYTPLP 1156
Query: 3547 IPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREV 3726
+PS+PW LSMDF++ LPRTQRG DS+ VVVDRFSKM HF+ CK++ DAV VA+LF +E+
Sbjct: 1157 VPSKPWEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAELFLKEI 1216
Query: 3727 YRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLR 3906
RLHG+P +IVSDRDT+F+ +FW++LW + T+L FS+++HPQTDGQTEV NR+LG +LR
Sbjct: 1217 VRLHGVPKTIVSDRDTKFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTLGRILR 1276
Query: 3907 CLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLP 4062
CLV + + WD+KL+ AEFA N A + +TG SPF+VVYG P P+DL ++P
Sbjct: 1277 CLVSKSLKDWDLKLAAAEFAFNRAPSTATGHSPFEVVYGVNPLMPLDLSSVP 1328
>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
Length = 1521
Score = 1145 bits (2963), Expect = 0.0
Identities = 586/1255 (46%), Positives = 807/1255 (64%), Gaps = 32/1255 (2%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
++++ EF+G L+ FLDW++S+++ D+ +P +R+V V +L+G A WW ++
Sbjct: 89 RLEVAEFYGKLNPTAFLDWIMSMEDYFDWYAMPENRKVRFVKAKLKGAARLWWHNIENQA 148
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
R +P + +WD+ K K++ FLP +Y + +Y K L+QG+++++ Y++EF++L +R+
Sbjct: 149 HRTGQPPIDTWDEMKLKMKEHFLPTDYEQLMYTKLFSLKQGTKSVEEYTEEFHELSIRNQ 208
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQL-LRRSPFPLPSSGN 933
V E+D QL +RY GLR++ Q + +V + +Q A+ E+ L R S P G+
Sbjct: 209 VXESDAQLAARYKAGLRMEIQLEMIAAHTYTVDDVYQLALKIEEGLKFRVSRHPSSQIGS 268
Query: 934 HFDRSPTGSQIKPAP------------TLPSGSRAQGDLGFLXXXXXXXXXXXXXXXXCF 1077
F T + + T P+ + A + CF
Sbjct: 269 TFSNRTTSKPLSTSNFRTSIHVNGGDNTQPTSNVAHQNGNKGKNSMSNGDRKVDATPLCF 328
Query: 1078 NCGDPSHLQSACPKRASTRALYV-----DDVCDADFSSSPVYDDDISAQPPEEFLHGDVG 1242
CG H CP T+ L+ + ++ Y++D ++ + + G
Sbjct: 329 KCGGHGHYAVVCP----TKGLHFCVEEPESELESYLKKEETYNEDEVSEECDYYDGMTEG 384
Query: 1243 QLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNL 1422
LV++ + P+ + ++ +R +F++ + G++C IID GS N+ + + ++KLNL
Sbjct: 385 HSLVVRPLLTIPKVKGEEDWRRISIFQTRISCHGRLCTMIIDGGSSLNIASQELVEKLNL 444
Query: 1423 STEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQY 1602
TE HP P+ +AW+ D I V+ R L+TF G + +SVWC+V+P+ H+LLGRPW +
Sbjct: 445 KTERHPNPFRVAWVN-DTSIPVSFRCLVTFLFGKDFEESVWCEVLPIKVSHILLGRPWLF 503
Query: 1603 DRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXT----DAHPRVLSISYSAFARAMDASS 1770
DR V HDG +NTY+ + +G K L +A P+ + ++ F +
Sbjct: 504 DRKVQHDGYENTYALIHNGRKKILRPMKEVPPIKKSNENAQPKKV-LTMCQFENESKETX 562
Query: 1771 FVLLLVSRDVSE----SPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAK 1938
+ L++R V E P+ +L +F+D++P ELP LPP+R IQH ID IPGA
Sbjct: 563 VIFALMARKVEEFKEQDKEYPANARKILDDFSDLWPVELPNELPPMRDIQHAIDLIPGAS 622
Query: 1939 LPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRAL 2118
LPN P YRM+P+EH EL+RQ++ELL +G IRESLSPC VPALL PKKDG+WRMCVDSRA+
Sbjct: 623 LPNLPAYRMNPTEHAELKRQVDELLTKGFIRESLSPCGVPALLTPKKDGSWRMCVDSRAI 682
Query: 2119 NKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEW 2298
NKIT++Y FPIPRLDD+LD + G+ +FSK+DL+SGYHQIRIRPGDEWKT+FKT++GL+EW
Sbjct: 683 NKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQIRIRPGDEWKTSFKTKDGLYEW 742
Query: 2299 LVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRT 2478
LVMPFGL+NAPSTFMRIM Q L+P IG VVVYFDDIL+YS+S DH HL+ V+ LR
Sbjct: 743 LVMPFGLTNAPSTFMRIMTQVLKPFIGRFVVVYFDDILIYSRSCEDHEEHLKQVMRTLRA 802
Query: 2479 ECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASF 2658
E FY KC F++ +V+FLG+ VS+ G+ D KI AI DWPVPT + EVRSFHG+A+F
Sbjct: 803 EKFYINLKKCTFMSPSVVFLGFVVSSKGVETDPEKIKAIVDWPVPTNIHEVRSFHGMATF 862
Query: 2659 YRRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHS 2838
YRRFI +FS+IMAPIT+ M F W A AF +IK K+ + P+L LPDF FE+
Sbjct: 863 YRRFIRNFSSIMAPITECMKPGLFIWTKAANKAFEEIKSKMVNPPILRLPDFEKVFEVAC 922
Query: 2839 DASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFIL 3018
DAS VGIGAVLSQ GHP+A+FSEKLN + +YSTYD+EFYAVV+AIRHW+HYL ++EF+L
Sbjct: 923 DASHVGIGAVLSQEGHPVAFFSEKLNGAKKKYSTYDLEFYAVVQAIRHWQHYLSYKEFVL 982
Query: 3019 YTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRI 3198
Y+DHEAL+++NSQ L++RHA WS+FLQ FTF +KH +GI NKVADALSR+ LLV+M
Sbjct: 983 YSDHEALRYLNSQKKLNSRHAKWSSFLQLFTFNLKHCAGIENKVADALSRKALLLVNMST 1042
Query: 3199 EVPGFDSFRELYATDSFFKIILSSLARGDAS---DFILHDGFLFKGICLCVPMCSLRLRL 3369
GF+ + Y D+ F + SSL G + DF + +G+LF LC+P SLR +
Sbjct: 1043 TTIGFEELKHCYDNDADFGDVYSSLLSGSKATCIDFQILEGYLFYKNRLCLPRTSLRDHV 1102
Query: 3370 VAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRP 3540
+ ELH GH GRD++I LV ++FWP+L++DV + + +CR CQV KG+ N GLY P
Sbjct: 1103 IWELHGGGMGGHFGRDKTIALVEDRFFWPSLKKDVWKVIKQCRACQVGKGSKQNTGLYTP 1162
Query: 3541 LPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFR 3720
LP+PS+PW LSMDFVLGLPRTQRG DSIFVVVDRFSKM HFIPCK+++DA +VA LFF+
Sbjct: 1163 LPVPSKPWEDLSMDFVLGLPRTQRGFDSIFVVVDRFSKMAHFIPCKKASDASYVAALFFK 1222
Query: 3721 EVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNL 3900
EV RLHGLP SIVSDRD ++ NRSLGNL
Sbjct: 1223 EVVRLHGLPQSIVSDRD---------------------------------KLSNRSLGNL 1249
Query: 3901 LRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPS 4065
LRC+V D R WD L QAEFA N + NR+TG SPF+V YG P+ PVDL+ LP+
Sbjct: 1250 LRCIVRDQLRKWDNXLPQAEFAFNSSTNRTTGYSPFEVAYGLKPKQPVDLIPLPT 1304
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 1136 bits (2939), Expect = 0.0
Identities = 586/1253 (46%), Positives = 790/1253 (63%), Gaps = 28/1253 (2%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
K++IP+FHG+L+ ++ LDW +++ + +FK + + + +L+G AS W++ LK R
Sbjct: 89 KVEIPDFHGSLNPEDLLDWFRTIERVFEFKGYSDGKAFKVAILKLKGYASLWYENLKNQR 148
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
R K + SW K K KL +F+P Y++ ++ K QL+Q + +++Y +F QL ++ +
Sbjct: 149 RRDGKEPIKSWLKLKKKLNEKFIPKEYTQDIFIKLTQLKQDQQPLESYLRDFEQLTLQCE 208
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLLRRSPFPLPSSGNH 936
+ E +Q ++R++ GL + + M S EA A+ EK ++ P++
Sbjct: 209 LNEKPEQKIARFVEGLDTKIAHRVRMQQVWSFDEAVNLALRVEKMGKGKATTTKPTTKPA 268
Query: 937 FDRSPTGSQIKPAPT------LPSGSRAQGDLGFLXXXXXXXXXXXXXXXXCFNCGDPSH 1098
R PT +I P+ L G A+ C+ C H
Sbjct: 269 TFRPPTSFKINEPPSQNKTTILDKGKAAETS-----------QKKTMPLKKCYQCQGYGH 317
Query: 1099 LQSACPKRASTRALYV----DD---VCDADFSSSPVYDDDISAQPPEEFLHGDVGQLLVL 1257
CP + + + V DD VCD + + +DD+ + D G LV
Sbjct: 318 FAKECPTKRALSSFEVVHWGDDEILVCDEEVEGTDHEEDDV--------VMPDAGLSLVT 369
Query: 1258 QRVCLT-PRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLSTEP 1434
RV T P+ + D QR ++F S CT++G++C IID GSC NV ++ I+KL+L T+
Sbjct: 370 WRVMHTQPQPLEMD--QRQQIFRSRCTIKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQD 427
Query: 1435 HPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYDRGV 1614
HP+PY L WL + E+ V ++ L+TFSIG Y+D CDV+PMDACHLLLGRPW++DR
Sbjct: 428 HPSPYKLRWLNKGAEVRVDKQCLVTFSIGKNYSDEALCDVLPMDACHLLLGRPWEFDRDS 487
Query: 1615 IHDGRQNTYSFLFHGVKVTLLXXXXXXXXT------DAHPRVLSISYSAFARAMDASSFV 1776
+H GR NTY+F F KV L T + VL I+ + + + V
Sbjct: 488 VHHGRDNTYTFKFRSRKVILTPLPPVLKHTTPPSMLEPSKEVLLINEAEMLQELKGDEDV 547
Query: 1777 LLLVSRDVSESPNV--PSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNR 1950
L+++DV NV P V LL + D+FP+ELP GLPPLR I+HQIDFIPGA LPN+
Sbjct: 548 YALIAKDVVFGQNVSLPKEVQELLQSYEDVFPNELPSGLPPLRGIEHQIDFIPGATLPNK 607
Query: 1951 PHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKIT 2130
YR P +EL++QI EL+ +G +RESLSPC+VPALL+PKKDG+WRMC DSRA+N IT
Sbjct: 608 AAYRSDPKATQELQQQIGELVSKGFVRESLSPCSVPALLVPKKDGSWRMCTDSRAINNIT 667
Query: 2131 VRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMP 2310
++Y FPIPRLDD+LD+L GA +FSK+DL+ GYHQ+RI+ GDEWKTAFKT+ GL+EWLVMP
Sbjct: 668 IKYRFPIPRLDDILDELSGAQLFSKIDLRQGYHQVRIKEGDEWKTAFKTKHGLYEWLVMP 727
Query: 2311 FGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFY 2490
FGLSNAPSTFMR+M + LRP +G VVVYFDDILVYS S +HL HL+ + LR Y
Sbjct: 728 FGLSNAPSTFMRLMTEVLRPYLGRFVVVYFDDILVYSPSKEEHLKHLQVLFETLREHKLY 787
Query: 2491 AAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRF 2670
KC F+ V FLG+ +S GI VD K+ AI+ WP+P +T+VRSFHGLASFYRRF
Sbjct: 788 GKLEKCSFMQNEVQFLGFIISDRGILVDQEKVKAIKSWPIPKNITDVRSFHGLASFYRRF 847
Query: 2671 IPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASK 2850
I FST+MAPIT+ M F W +A ++F IK KL +P+L LP+F+ FE+ DAS
Sbjct: 848 IKDFSTLMAPITECMKKGEFKWGDKAESSFNIIKEKLCESPILTLPNFNKLFEVECDASG 907
Query: 2851 VGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDH 3030
+GIGAVL Q PIAYFSEKL+ + YSTYD EFYA+VRA+ HW HYL R F+L++DH
Sbjct: 908 IGIGAVLVQEHKPIAYFSEKLSGAKLNYSTYDKEFYAIVRALNHWSHYLKPRPFVLHSDH 967
Query: 3031 EALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPG 3210
EALK+IN Q L+ RHA W FLQ F F K+ G N VADALSRR +L M V G
Sbjct: 968 EALKYINGQHKLNHRHAKWVEFLQSFNFSSKYIEGKDNIVADALSRRFIMLSFMEQRVLG 1027
Query: 3211 FDSFRELYATDSFFKIILSSLARGD---ASDFILHDGFLFKGICLCVPMCSLRLRLVAEL 3381
F+ +ELY D FK L G S +++ +GFLF G LCVP R L+ E+
Sbjct: 1028 FEYMKELYVEDPDFKGEWELLQSGQIKLKSKYLVQNGFLFFGNKLCVPRGPYRNLLIREV 1087
Query: 3382 HS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIP 3552
HS GH G ++ D+++ Q++WP + DV + RC CQ SK + G Y PLP+P
Sbjct: 1088 HSNGLAGHFGIQKTYDILQEQFYWPKMLGDVQDVIKRCAPCQQSK-SYFQTGPYTPLPVP 1146
Query: 3553 SQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYR 3732
+QPW +SMDF++ LPRTQRG DSI VVVDRFSKM HFI CK++ DA VA+L+F+EV +
Sbjct: 1147 NQPWEDISMDFIVALPRTQRGKDSIMVVVDRFSKMAHFIACKKTEDATSVAELYFKEVVK 1206
Query: 3733 LHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCL 3912
LHG+P SIVSDRD++F+SHFWR+LW + T L FS+++HPQTDGQTEV N++LG +LRC
Sbjct: 1207 LHGIPKSIVSDRDSKFMSHFWRTLWKLLKTRLLFSTSHHPQTDGQTEVTNKTLGRILRCT 1266
Query: 3913 VGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPSRT 4071
V + + WD+KL+QAEFA N A + +TG SPF+VVYG P P DL + T
Sbjct: 1267 VARSLKDWDLKLAQAEFAFNRAPSTTTGKSPFEVVYGVNPMMPTDLAPIKRNT 1319
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 1134 bits (2934), Expect = 0.0
Identities = 591/1288 (45%), Positives = 802/1288 (62%), Gaps = 65/1288 (5%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
K IP F G D D +L W ++VD+ + P RV + AS WW + +
Sbjct: 154 KFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPESTRVRAATSEFTDFASVWWIE-HGKK 212
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
+ + P+ +WD K +R F+P Y+R L + QQLRQG+++++ Y E L+R +
Sbjct: 213 NPNNMPQ--TWDALKRVMRARFVPSYYARDLLNRLQQLRQGAKSVEEYYQELQMGLLRCN 270
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLLRRSPFP------- 915
+ ET+D ++R++GGL + D+++ ++++ A E+++ R
Sbjct: 271 LEETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAG 330
Query: 916 ---------LPSSGNHFDRSPTGSQIKPAPTLPSGSRAQGDLGFLXXXXXXXXXXXXXXX 1068
P +G S T + + AP S A
Sbjct: 331 KTSSWQTRTTPPAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDV 390
Query: 1069 XCFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISA---------QPPEE 1221
C C H+Q CP S R L V + D ++SS+ +DDD A +PPEE
Sbjct: 391 QCHRCKGFGHVQRDCP---SKRVLVVKN--DGEYSSASDFDDDTLALLAADHADNEPPEE 445
Query: 1222 FL---HGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVV 1392
+ D + L++QRV L+ + E + QRH LF++ C V+ + CR IID GSC N+
Sbjct: 446 HIGAAFADHYESLIVQRV-LSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLA 504
Query: 1393 AADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDAC 1572
+++ ++KL LST+PHP PY + WL + VT+ V + F+I G Y D V CDVVPM AC
Sbjct: 505 SSEMVEKLALSTKPHPHPYYIQWLNNSGKAKVTKLVHINFAI-GNYHDVVECDVVPMQAC 563
Query: 1573 HLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTD--------------- 1707
++LLGRPWQ+DR +H GR N YSFL+H K+ L D
Sbjct: 564 NILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHSMSPEDILRDDVAKAAKSKCESDKK 623
Query: 1708 ------------AHPRVLSISYSAFARAMDASSFVLLLVSRDVSES-----PNVPSVVAP 1836
P+ L + S + + S LV +D S ++P VA
Sbjct: 624 AQSDGKKPETINLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVAN 683
Query: 1837 LLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLH 2016
+L E++D+FP E+PPGLPP+R I+HQID IPGA LPNR YR +P E +E++RQ+ ELL
Sbjct: 684 ILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLD 743
Query: 2017 RGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATV 2196
+G++RESLSPCAVP +L+PKKDG+WRMCVD RA+N IT+RY PIPRLDD+LD+L G+ V
Sbjct: 744 KGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIV 803
Query: 2197 FSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLI 2376
FSK+DL+SGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFGL+NAPSTFMR+MN+ LRP I
Sbjct: 804 FSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFI 863
Query: 2377 GSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSA 2556
G VVVYFDDIL+YSKS+ +H HLRAV + LR + KC F T+ V FLGY V+
Sbjct: 864 GKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTP 923
Query: 2557 TGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDL-MHGKSFS 2733
GI VD AK+ AIQ WP P T+++VRSF GLA FYRRF+ FSTI AP+ L G F+
Sbjct: 924 QGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNVLTKKGVPFT 983
Query: 2734 WPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKL 2913
W T AF +K KLTHAPLL LPDF+ FEL DAS +G+G VL Q G P+AYFSEKL
Sbjct: 984 WGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKL 1043
Query: 2914 NATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSA 3093
+ YSTYD E YA+VR + W+HYL+ +EF++++DHE+LKHI SQ L+ RHA W
Sbjct: 1044 SGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVE 1103
Query: 3094 FLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSL 3273
F++ F +V+KH+ G N +ADALSRR++LL + ++ G ++ ++ YA D+ F +L
Sbjct: 1104 FIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHC 1163
Query: 3274 ARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYF 3441
G + F+++DGF+F+ LC+P S+RL L+ E H GH G ++ D++ +F
Sbjct: 1164 KDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1223
Query: 3442 WPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHD 3621
WP +RRDV RFVARC CQ +K GLY PLP+P+ PW +SMDFVLGLPRT+RG D
Sbjct: 1224 WPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRD 1283
Query: 3622 SIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRS 3801
SIFVVVDRFSKM HFIPC ++ DA H+A LFFRE+ RLHG+P +IVSDRDT+FLSHFWR+
Sbjct: 1284 SIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRT 1343
Query: 3802 LWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLAL 3981
LW+ T+L FS+ HPQTDGQTEVVNR+L +LR ++ + W+ L EFA+N +L
Sbjct: 1344 LWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSL 1403
Query: 3982 NRSTGLSPFQVVYGFLPRAPVDLLTLPS 4065
+ +T + PFQ+VYG LPRAP+DL+ LPS
Sbjct: 1404 HSTTKMCPFQIVYGLLPRAPIDLMPLPS 1431
Score = 449 bits (1154), Expect = e-123
Identities = 245/622 (39%), Positives = 354/622 (56%), Gaps = 35/622 (5%)
Frame = +1
Query: 2284 GLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVL 2463
GL+E+ VM FGL+NAP+ FM +MN+ + VVV+ DDILVYS+S DH HLR VL
Sbjct: 1625 GLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILVYSQSEEDHQHHLRLVL 1684
Query: 2464 SILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFH 2643
LR YA SKC F V FLG+ +SA G+ VD + A+ DW P T+T++RSF
Sbjct: 1685 GKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFL 1744
Query: 2644 GLASFYRRFIPHFSTIMAPITDLM-HGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSV 2820
GLA +YRRFI +FS I P+T L+ + F W Q AF +K KL +P+L LPD
Sbjct: 1745 GLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRK 1804
Query: 2821 PFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLF 3000
F ++ DAS G+G VL Q GH +AY S +L G Y T+D+E AVV A++ WRHYL
Sbjct: 1805 DFMVYCDASPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWRHYLI 1864
Query: 3001 HREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRR--- 3171
+YTDH++LK+I +Q L+ R W ++ + + + G N VADALSR+
Sbjct: 1865 GNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRKSHC 1924
Query: 3172 -------------------------HSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLA 3276
L + + D RE D + +L ++
Sbjct: 1925 NTLGVRGIPPELNQQMEALNLSIVSRGFLATLEAKPTLLDQIREAQKNDPDMRGLLKNMK 1984
Query: 3277 RGDASDFILHD-GFLFKGICLCVP-MCSLRLRLVAELHSTG---HVGRDRSIDLVRRQYF 3441
+G A+ FI + G L+ +CVP + L+ ++ E H + H G + ++ +Y+
Sbjct: 1985 QGKAAGFIEDEHGTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYW 2044
Query: 3442 WPTLRRDVSRFVARCRICQVSKGTSTN-AGLYRPLPIPSQPWGALSMDFVLGLPRTQRGH 3618
W +++R+++ FVA C +CQ K AGL +PL +P W + MDF+ GLP+TQ G+
Sbjct: 2045 WVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGY 2104
Query: 3619 DSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWR 3798
DSI+VVVDR +K+ FIP K + +A+L+F + LHG+P IVSDR+++F SHFW+
Sbjct: 2105 DSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHFWK 2164
Query: 3799 SLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLA 3978
L T L+FS+AYHPQTDGQTE +N+ L ++L V D + WD L AEF++N +
Sbjct: 2165 KLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEFSYNNS 2224
Query: 3979 LNRSTGLSPFQVVYGFLPRAPV 4044
S ++P++ +YG R P+
Sbjct: 2225 YQASIQMAPYEALYGRKCRTPL 2246
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 1113 bits (2879), Expect = 0.0
Identities = 581/1300 (44%), Positives = 801/1300 (61%), Gaps = 77/1300 (5%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
K IP F G D D ++ W ++VD+ + P + RV + AS WW + +
Sbjct: 148 KFKIPPFDGKYDPDAYITWEIAVDQKFACHEFPENARVRAATSEFTEFASVWWIE-HGKK 206
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
+ + P+ +WD K +R F+P Y+R + K QQLRQG+++++ Y E ++R +
Sbjct: 207 NPNNMPQ--TWDALKRVMRARFVPSYYARDMLNKLQQLRQGTKSVEEYYQELQMGMLRCN 264
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLLRR----------- 903
+ E ++ ++R++GGL + QD+L ++V+ A E+++ R
Sbjct: 265 IEEGEESAMARFLGGLNREIQDILAYKDYANVTRLFHLACKAEREVQGRRASARSNVSAG 324
Query: 904 --SPFPLPSSGNHFDRS--PTGSQIKPAPTLPSGSR------------AQGDLGFLXXXX 1035
+P+ ++ + R+ PT S +PAP S + AQ G
Sbjct: 325 KSTPWQQRTTTSMTGRTLAPTPSPSRPAPPPSSSDKPRASSTNSATKSAQKPAG---SAS 381
Query: 1036 XXXXXXXXXXXXCFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSP----------V 1185
C+ C H+Q CP + R L V D D +SS+
Sbjct: 382 SVASTGRTRDVLCYRCKGYGHVQRDCPNQ---RVLVVKD--DGGYSSASDLDEATLALLA 436
Query: 1186 YDDDISAQPPEEFLHGDVGQ---LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICR 1356
DD + +PPEE + D + L++QRV L+ + E + QRH LF++ C ++ + CR
Sbjct: 437 ADDAGTKEPPEEQIGADDAEHYESLIVQRV-LSAQMEKAEQNQRHTLFQTKCVIKERSCR 495
Query: 1357 FIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTD 1536
IID GSC N+ ++D ++KL L+T+PHP PY + WL ++ VT+ V + F+IG Y D
Sbjct: 496 LIIDGGSCNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIGS-YRD 554
Query: 1537 SVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHP 1716
V CDVVPMDAC++LLGRPWQ+D +H GR N YS + H K+ LL D
Sbjct: 555 VVDCDVVPMDACNILLGRPWQFDSDCMHHGRSNQYSLIHHDKKIILLPMSPEAIVRDDVA 614
Query: 1717 RVLSISYSAFAR---------AMDASSFVLLLVSRDVSE--------------------- 1806
+ + LL DV+E
Sbjct: 615 KATKAKTENNKNIKVVGNNKDGIKLKGHCLLATKTDVNELFASTTVAYALVCKDALISIQ 674
Query: 1807 --SPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEH 1980
++P V+ +L E++D+FP E+P GLPP+R I+HQID IPGA LPNR YR +P E
Sbjct: 675 DMQHSLPPVITNILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEET 734
Query: 1981 EELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRL 2160
+E++RQ++ELL +G++RESLSPCAVP +L+PKKDG WRMCVD RA+N IT+RY PIPRL
Sbjct: 735 KEIQRQVQELLDKGYVRESLSPCAVPVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRL 794
Query: 2161 DDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTF 2340
DD+LD+L GA VFSK+DL+SGYHQIR++ GDEWKTAFKT+ GL+EWLVMPFGL+NAPSTF
Sbjct: 795 DDMLDELSGAIVFSKVDLRSGYHQIRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTF 854
Query: 2341 MRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLT 2520
MR+MN+ LR IG VVVYFDDIL+YSKS+ +H+ H+RAV + LR + KC F T
Sbjct: 855 MRLMNEVLRAFIGKFVVVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCT 914
Query: 2521 ENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAP 2700
+ V FLGY V+ GI VD AK+ AI WP+P T+T+VRSF GLA FYRRF+ FSTI AP
Sbjct: 915 DRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAP 974
Query: 2701 ITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQ 2877
+ +L G FSW AF +K KLTHAPLL LPDF+ FEL DAS +G+G VL Q
Sbjct: 975 LNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQ 1034
Query: 2878 HGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQ 3057
G P+AYFSEKL+ + YSTYD E YA+VR + W+HYL+ +EF++++DHE+LKHI SQ
Sbjct: 1035 EGKPVAYFSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQ 1094
Query: 3058 DSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYA 3237
L+ RHA W F++ F +V+KH+ G N +ADALSRR++LL + ++ G ++ ++ Y
Sbjct: 1095 GKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLETIKDQYV 1154
Query: 3238 TDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGR 3405
D+ FK +L G + +I+ DGF+F+ LC+P S+RL L+ E H GH G
Sbjct: 1155 HDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGA 1214
Query: 3406 DRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDF 3585
++ D++ +FWP +RRDV R VARC CQ +K GLY PLP+PS PW +SMDF
Sbjct: 1215 KKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDF 1274
Query: 3586 VLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSD 3765
VLGLPRT++G DS+FVVVDRFSKM HFIPC ++ DA H+A LFFRE+ RLHG+P +IVSD
Sbjct: 1275 VLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVPNTIVSD 1334
Query: 3766 RDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIK 3945
RD +FLSHFWR+LW+ T+L FS+ HPQTDGQTEVVNR+L +LR ++ + W+
Sbjct: 1335 RDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDC 1394
Query: 3946 LSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPS 4065
L EFA+N +L+ +T + PFQ+VYG LPRAP+DL+ LPS
Sbjct: 1395 LPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPS 1434
>gb|EMJ21939.1| hypothetical protein PRUPE_ppa023598mg [Prunus persica]
Length = 1457
Score = 1108 bits (2865), Expect = 0.0
Identities = 577/1261 (45%), Positives = 783/1261 (62%), Gaps = 35/1261 (2%)
Frame = +1
Query: 385 EHSFKIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQL 564
++ K +IP F G L ++FLDW+V V+ D +VP + V +V RL+ A+ WW QL
Sbjct: 77 DYRIKAEIPNFWGNLKIEDFLDWLVEVERFFDIMEVPEHKMVKMVAFRLKATAAVWWDQL 136
Query: 565 KTMRSRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLL 744
+ R RQ K ++ +W K K+ + FLP +Y + LY+ + QG+R++ Y++EF L
Sbjct: 137 QNSRQRQGKQRVRTWRKMKSLMMERFLPTDYEQILYRMYLGCTQGNRSVSEYTEEFMHLA 196
Query: 745 VRSDVRETDDQLVSRYIGGLRLQYQD------------VLNMFSPSSVSEAHQRAVLYEK 888
R+ + ETD+Q V+RY GL++ Q+ +NM + + E +R + +
Sbjct: 197 ERNHLTETDNQKVARYNNGLKISIQEKIGMQNIWTLQEAINMAMKAELLEKEKRQPNFRR 256
Query: 889 QLLRRSPFPLPSSGNHFDRSPTGSQ----IKPAPTLPSGSRAQGDLGFLXXXXXXXXXXX 1056
S + +S D+ Q KPA T+ + + +
Sbjct: 257 NTTEASEYATGASSGSGDKGKVQQQPRGTTKPATTVQNKNFNESSSRTFNRGQSRNQSQN 316
Query: 1057 XXXXX----CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEF 1224
C+ C P H + CP+ T+A ++++V D D V +DD + EF
Sbjct: 317 PYAKPRTDICYRCQKPGHRSNVCPEW--TQANFIEEV-DEDEEKDEVGEDDYAGA---EF 370
Query: 1225 LHGDVGQ--LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAA 1398
+ + +LVLQRV L P+ E QRH + S C+++ K+C I+D+GSCEN V+
Sbjct: 371 AIEERMERIILVLQRVLLAPKEEG----QRHSICRSLCSIKNKVCDVIVDNGSCENFVSK 426
Query: 1399 DAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHL 1578
++ L LSTEPH PYSL W+++ + V + SIG Y D V CDV+ MDACH+
Sbjct: 427 KLVEHLQLSTEPHVRPYSLGWVKKGPSVRVAETYSVPLSIGKHYIDDVLCDVIDMDACHI 486
Query: 1579 LLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSI-----SYSA 1743
LLG+ WQ+D + GR N F ++ K+ + + R S S
Sbjct: 487 LLGQLWQFDVDATYKGRDNVILFSWNNRKIAMATTKPSKQSVEPKTRSSSFLTLISSEQE 546
Query: 1744 FARAMDASSFVLLLVSRDVSE----SPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQH 1911
+ + + + LV + + + ++P V +LS+F ++ ++LP LP +R IQH
Sbjct: 547 LNKVVKEAEYFCPLVLKGLLKLGRGESDIPQDVQKILSQFQELLSEKLPNELPSMRDIQH 606
Query: 1912 QIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAW 2091
+ID +PGA LPN PHYRMSP E++ LR QIEELL +G IRESLSPCAVP LL+PKKD W
Sbjct: 607 RIDLVPGANLPNLPHYRMSPKENDILREQIEELLQKGFIRESLSPCAVPVLLVPKKDKTW 666
Query: 2092 RMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAF 2271
RMCVDSRA+NKITV+ FPIPRL+D+LD L G+ VFSK+DL+SGYHQIRIRPGDEWKTAF
Sbjct: 667 RMCVDSRAINKITVKSRFPIPRLEDMLDVLSGSRVFSKIDLRSGYHQIRIRPGDEWKTAF 726
Query: 2272 KTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHL 2451
K+++GLFEWLVMPFGLSNAPSTFMR+MNQ LRP IGS VVVYFDDIL+YS + +HL HL
Sbjct: 727 KSKDGLFEWLVMPFGLSNAPSTFMRLMNQVLRPFIGSFVVVYFDDILIYSTTKEEHLVHL 786
Query: 2452 RAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEV 2631
R VL +LR Y KC F T +LFLG+ V GI VDD KI AI DWP P ++EV
Sbjct: 787 RQVLDVLRENKLYMNLKKCTFCTNKLLFLGFVVGENGIQVDDEKIKAILDWPTPKIVSEV 846
Query: 2632 RSFHGLASFYRRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPD 2811
RSFHGLA+FYRRF+ HFS+I APIT+ + FSW + +F DIK KL AP+LALP+
Sbjct: 847 RSFHGLATFYRRFVRHFSSITAPITECLKKGRFSWGDEQERSFADIKEKLCTAPVLALPN 906
Query: 2812 FSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRH 2991
F FE+ DAS VG+GAVLSQ P+A+FSEKL+ ++STYD EFYAVVRA++ W H
Sbjct: 907 FEKVFEVECDASGVGVGAVLSQDKRPVAFFSEKLSDACQKWSTYDQEFYAVVRALKQWEH 966
Query: 2992 YLFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRR 3171
YL +EF+L+TDH+AL+ W FLQ+F+FV++H SG TN+V DALSRR
Sbjct: 967 YLIQKEFVLFTDHQALR--------------WVTFLQKFSFVIRHTSGKTNRVVDALSRR 1012
Query: 3172 HSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLARGD-ASDFILHDGFLFKGICLCVPM 3348
SLLV EV GF+ +ELY D F+ I + + +D+ L++G+LFKG LC+P+
Sbjct: 1013 ASLLVTQTQEVVGFECLKELYEGDDDFREIWTKCTNQEPMADYFLNEGYLFKGNQLCIPV 1072
Query: 3349 CSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTST 3519
SLR +L+ +LH +GH+GRD++I ++ +++WP L+RDV V +C CQ SKG
Sbjct: 1073 SSLREKLIQDLHGGGLSGHLGRDKTIAGMKERFYWPQLKRDVGTIVRKCYTCQTSKGQVQ 1132
Query: 3520 NAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVH 3699
N GLY PLP+P+ W L+MDFVLGLPRTQRG DS++VVVDRFS M HFI CK++ DA +
Sbjct: 1133 NTGLYMPLPVPNDIWQDLAMDFVLGLPRTQRGMDSVYVVVDRFSNMAHFIACKKTDDASN 1192
Query: 3700 VAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVV 3879
+A+L FREV RLHG+P SI SDRD +FLSHFW +LW + T L+ SS HPQTD QTEV
Sbjct: 1193 IAKLVFREVVRLHGVPTSITSDRDAKFLSHFWITLWRLFGTTLNRSSTTHPQTDSQTEVT 1252
Query: 3880 NRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTL 4059
R+LGN++ EFA+N ++ +TG SPF +VY +P VDL+ L
Sbjct: 1253 TRTLGNMV------------------EFAYNSKIHSATGKSPFSIVYTAIPNHVVDLVKL 1294
Query: 4060 P 4062
P
Sbjct: 1295 P 1295
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 1093 bits (2828), Expect = 0.0
Identities = 580/1288 (45%), Positives = 784/1288 (60%), Gaps = 65/1288 (5%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
K IP F G D D +L W ++VD+ + P RV + AS WW + +
Sbjct: 154 KFKIPPFDGKYDPDAYLSWEIAVDQKFACHEFPESTRVRAATSEFTDFASVWWIE-HGKK 212
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
+ + P+ +WD K +R F+P Y+R L + QQLRQ
Sbjct: 213 NPNNMPQ--TWDALKRVMRARFVPSYYARDLLNRLQQLRQ-------------------- 250
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLLRRSPFP------- 915
ET+D ++R++GGL + D+++ ++++ A E+++ R
Sbjct: 251 -EETEDAAMARFLGGLNREIYDIVDYKDYTNMTRLFHLACKAEREVQGRRASAKANFSAG 309
Query: 916 ---------LPSSGNHFDRSPTGSQIKPAPTLPSGSRAQGDLGFLXXXXXXXXXXXXXXX 1068
P +G S T + + AP S A
Sbjct: 310 KTSSWQTRTTPLAGRTASPSSTPTTSRAAPPPSSDKSATKAAQPAPSASSMASTGRMRDV 369
Query: 1069 XCFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISA---------QPPEE 1221
C C H+Q CP S R L V + D ++SS+ +DDD A +PPEE
Sbjct: 370 QCHRCKGFGHVQRDCP---SKRVLVVKN--DGEYSSASDFDDDTLALLAADHADNEPPEE 424
Query: 1222 FL---HGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVV 1392
+ D + L++QRV L+ + E + QRH LF++ C V+ + CR IID GSC N+
Sbjct: 425 HIGAAFADHYESLIVQRV-LSAQMEKAEQNQRHTLFQTKCVVKERCCRMIIDGGSCNNLA 483
Query: 1393 AADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDAC 1572
+++ ++KL LST+PHP Y + WL + VT+ V + F+I G Y D V CDVVPM AC
Sbjct: 484 SSEMVEKLALSTKPHPHSYYIQWLNNSGKAKVTKLVHINFAI-GNYHDVVECDVVPMQAC 542
Query: 1573 HLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTD--------------- 1707
++LLGRPWQ+DR +H GR N YSFL+H K+ L D
Sbjct: 543 NILLGRPWQFDRDSMHHGRSNQYSFLYHDKKIVLHPMSPEDILRDDVAKAAKSKCESDKK 602
Query: 1708 ------------AHPRVLSISYSAFARAMDASSFVLLLVSRDVSES-----PNVPSVVAP 1836
P+ L + S + + S LV +D S ++P VA
Sbjct: 603 AQSDGKKPETINLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVAN 662
Query: 1837 LLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLH 2016
+L E++D+FP E+PPGLPP+R I+HQID IPGA LPNR YR +P E +E++RQ+ ELL
Sbjct: 663 ILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLD 722
Query: 2017 RGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATV 2196
+G++RESLSPCAVP +L+PKKDG+WRMCVD RA+N IT+RY PIPRLDD+LD+L G+ V
Sbjct: 723 KGYVRESLSPCAVPVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIV 782
Query: 2197 FSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLI 2376
FSK++L+SGYHQI ++ GDEWKTAFKT+ GL+EWLVMPFGL+NAPSTFMR+MN+ LRP I
Sbjct: 783 FSKVELRSGYHQIHMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFI 842
Query: 2377 GSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSA 2556
G VVVYFDDIL+YSKS+ +H HLRAV + LR + KC F T+ V FLGY V+
Sbjct: 843 GKFVVVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTP 902
Query: 2557 TGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDL-MHGKSFS 2733
GI VD AK+ AIQ WP P T+++VRSF GLA FY RF+ FSTI AP+ L G F+
Sbjct: 903 QGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCRFVQDFSTIAAPLNALTKKGVPFT 962
Query: 2734 WPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKL 2913
W T AF +KHKLTHAPLL LPDF+ FEL DAS +G+G VL Q G +AYFSEKL
Sbjct: 963 WGTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKLVAYFSEKL 1022
Query: 2914 NATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSA 3093
+ YSTYD E YA+VR + W+HYL+ +EF++++DHE+LKHI SQ L+ RHA W
Sbjct: 1023 SGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVE 1082
Query: 3094 FLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSL 3273
F++ F +V+KH+ G N +A+ALSRR++LL + ++ G ++ ++ YA D+ F +L
Sbjct: 1083 FIESFPYVIKHKKGKENIIANALSRRYTLLTQLDYKIFGLETIKDQYAHDADFNDVLLHC 1142
Query: 3274 ARGDA-SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYF 3441
G + F+++DGF+F+ LC+P S+RL L+ E H GH G ++ D++ +F
Sbjct: 1143 KDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGAKKTHDILASHFF 1202
Query: 3442 WPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHD 3621
WP +RRDV RFVARC CQ +K GLY PLP+P+ PW +SMDFVLGLPRT+RG D
Sbjct: 1203 WPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRD 1262
Query: 3622 SIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRS 3801
SIFVVVDRFSKMVHFIPC ++ DA H+A LFFRE+ RLHG+P +IVSDRDT+FLSHFWR+
Sbjct: 1263 SIFVVVDRFSKMVHFIPCHKTDDASHIADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRT 1322
Query: 3802 LWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLAL 3981
LW+ T+L FS+ HPQTDGQ EVVNR+L +LR ++ + W+ L EFA N +L
Sbjct: 1323 LWAKLGTKLLFSTTCHPQTDGQIEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFACNRSL 1382
Query: 3982 NRSTGLSPFQVVYGFLPRAPVDLLTLPS 4065
+ +T + PFQ+VY LPRAP+DL+ LPS
Sbjct: 1383 HSTTKMCPFQIVYSLLPRAPIDLMPLPS 1410
>gb|EOX95569.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
Length = 1452
Score = 1091 bits (2821), Expect = 0.0
Identities = 555/1162 (47%), Positives = 756/1162 (65%), Gaps = 36/1162 (3%)
Frame = +1
Query: 685 QLRQGSRTIDAYSDEFYQLLVRSDVRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAH 864
++ Q + T++ Y+ EF L +R + E+++Q+ SRY+ GL +D + + ++ +A
Sbjct: 103 RIEQNNMTVEEYTSEFNNLSIRVGLAESNEQITSRYLAGLNHSIRDEMGVVRLYNIEDAR 162
Query: 865 QRAVLYEKQLLRRSPFPLPSSGNHFDRS-------PTGSQ-IKPAPTLPSGSRAQGDL-- 1014
Q A+ EK++LR P G H+ + PT Q + A T+ +R ++
Sbjct: 163 QYALSAEKRVLRYGARK-PLYGTHWQNNSEARRGYPTSQQNYQGAATINKTNRGATNVEK 221
Query: 1015 -----------GFLXXXXXXXXXXXXXXXXCFNCGDPSHLQSACPKRASTRALYVDDVCD 1161
G CF CG+ H ACP+R A +++
Sbjct: 222 NDKGKSIMPYGGQNSSGSSTNKRGSNSHIRCFTCGEKGHTSFACPQRKVNLAELGEEL-- 279
Query: 1162 ADFSSSPVYDDDISAQPPEEFLHGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQ 1341
PVYD+ + E ++ G+ LV++R+ T E+ + +R +F + +
Sbjct: 280 -----EPVYDE-YKEEVEEIDVYPAQGESLVVRRIMTTTVNEEAEDWKRRSIFRTRVVCE 333
Query: 1342 GKICRFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIG 1521
GK+C +ID GS EN+++ +A+ KL L T HP PY + WL++ +E+ VT + L+ F++G
Sbjct: 334 GKVCDLVIDGGSMENIISKEAVNKLKLPTNKHPYPYKIGWLKKGHEVPVTTQCLVKFTMG 393
Query: 1522 GKYTDSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXX 1701
D CDVVPMD H+L+GRPW YD ++H + NTYSF + + TL
Sbjct: 394 DNSDDEALCDVVPMDVGHILVGRPWLYDHDMVHKTKPNTYSFYKNNKRYTLYPLREETKK 453
Query: 1702 TDAHPRVLSISYSAFARAMDASS------FVLL---LVSRDVSESPNVPSVVAPLLSEFA 1854
+ H ++ I+ A +A + L+ L S +S+SP P+ + LL EF
Sbjct: 454 SANH-KISKITRYLSAENFEAEGSEMGIMYALVTKHLKSDQMSKSPQYPTEIQQLLKEFG 512
Query: 1855 DIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRE 2034
++F ++LP LPPLR IQH ID +PGA LPN P YRM P + E++RQ+EEL +G +RE
Sbjct: 513 ELFNEDLPKSLPPLRSIQHAIDLVPGAALPNLPAYRMPPMQRAEVQRQVEELFEKGLVRE 572
Query: 2035 SLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDL 2214
S SPCA PALL PKKDG+WRMCVDSRA+NKIT++Y FPIPRLD++LDQL G+ VFSK+DL
Sbjct: 573 SKSPCACPALLAPKKDGSWRMCVDSRAINKITIKYRFPIPRLDEMLDQLVGSRVFSKIDL 632
Query: 2215 KSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVV 2394
KSGYHQIR+R GDEWKTAFKT +GLFEWLVMPFGLSNAPSTFMR+M + L+P + S VVV
Sbjct: 633 KSGYHQIRMRDGDEWKTAFKTPDGLFEWLVMPFGLSNAPSTFMRVMAEVLKPFLNSFVVV 692
Query: 2395 YFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVD 2574
YFDDIL+YS + HL HLR VL +L+ E Y KC F+ V+FLG+ VSA G+ D
Sbjct: 693 YFDDILIYSHTKEKHLKHLRQVLEVLQKEQLYINLKKCSFMQPEVVFLGFIVSAEGLKPD 752
Query: 2575 DAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDLMHGKSFSWPTQAAT 2754
KI AI +WP PT++ EVRSFHGLASFYRRFI +FS+IM+PIT+ + F W A
Sbjct: 753 PEKIRAISEWPAPTSIKEVRSFHGLASFYRRFIRNFSSIMSPITESLKKDGFEWSHSAQK 812
Query: 2755 AFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRY 2934
AF +K +T AP+LALPDF F + DAS VGIGAVLSQ G PI +FSEKL +R RY
Sbjct: 813 AFERVKALMTEAPVLALPDFEKLFVVECDASYVGIGAVLSQDGRPIEFFSEKLTDSRRRY 872
Query: 2935 STYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTF 3114
STYD+EFYA+VRAIRHW+HYL +REF +Y+DH+AL++++SQ LS +HA WS+FL +F F
Sbjct: 873 STYDLEFYALVRAIRHWQHYLAYREFAVYSDHQALRYLHSQKKLSNQHAKWSSFLNEFNF 932
Query: 3115 VVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSL---ARGD 3285
+K++SG +N VADALSRR +L M +V GF+ + Y++DS+F I++ L + +
Sbjct: 933 SLKYKSGQSNTVADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAE 992
Query: 3286 ASDFILHDGFLFKGICLCVPMCSLRLRLVAELHST---GHVGRDRSIDLVRRQYFWPTLR 3456
+ LH+ +LFKG LC+P SLR +++ ELH GH GRD+++ +V +Y+WP +R
Sbjct: 993 NLPYRLHEDYLFKGNQLCIPEGSLREQIIRELHGNGLGGHFGRDKTLVMVADRYYWPKMR 1052
Query: 3457 RDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVV 3636
RDV R V RC C KG++ N GLY PLP P PW LSMDFVLGLP+T +G DSIFVV
Sbjct: 1053 RDVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFVLGLPKTTKGFDSIFVV 1112
Query: 3637 VDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMA 3816
VDRFSKM HFIPC R++DA H+A+LFFRE+ LHG+P SIVSDR +F+ +FWR+LW
Sbjct: 1113 VDRFSKMAHFIPCFRTSDATHIAELFFREIVILHGIPTSIVSDRHVKFMGYFWRTLWRKF 1172
Query: 3817 NTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTG 3996
TEL +SS HPQTDGQTEVVNRSLGN+LRCL+ + P+ WD+ + QAEFA+N ++NRS
Sbjct: 1173 GTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLVIPQAEFAYNNSVNRSIK 1232
Query: 3997 LSPFQVVYGFLPRAPVDLLTLP 4062
+PF+ YG P+ +DL+ LP
Sbjct: 1233 KTPFEAAYGLKPQHVLDLVPLP 1254
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 1075 bits (2780), Expect = 0.0
Identities = 578/1318 (43%), Positives = 788/1318 (59%), Gaps = 95/1318 (7%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
K IP F D D +L W +++D+ D P ++RV + AS WW + +R
Sbjct: 156 KFTIPCFDEKYDPDAYLTWELAIDQKFACHDFPENKRVRAATSEFTDFASIWWSEF--VR 213
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
S + T WD K +R F+P ++R L K QQLRQG+++++ Y ++R
Sbjct: 214 SNPNNTPQT-WDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRCG 272
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLL-RRSPF------- 912
+ E DD ++R++GGL + QD+L +S++ A E+++ RR+ F
Sbjct: 273 LVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAG 332
Query: 913 -----------------PLPSSGNHFDRSPTGSQIKPAPTLPSGSRAQGDLGFLXXXXXX 1041
PSS N+ R P+ + P P+ P+ A
Sbjct: 333 RASSWTSSNVAAPSTRAAAPSSSNNKLR-PSTTNSTPCPSEPTRGVAATP---SKSSSSV 388
Query: 1042 XXXXXXXXXXCFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISA----- 1206
C C H++ CP STR + V D +SS+ D++ A
Sbjct: 389 ASSGRTRDIQCLRCKGYGHVRKDCP---STRVMIVR--ADGGYSSASDLDEETYALLATN 443
Query: 1207 --------QPPEEFLHGDVG---QLLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKIC 1353
EE + + + LV+QRV L+ + E + QRH LF++ C ++ + C
Sbjct: 444 NAGKGDAPHQDEEHIGAEAAEHYESLVVQRV-LSAQMERAEQNQRHTLFQTKCVIKERSC 502
Query: 1354 RFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYT 1533
R IID GSC N+ +A+ ++KL LST+PHP PY + WL ++ VTR V + F+I G Y
Sbjct: 503 RVIIDRGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI-GSYH 561
Query: 1534 DSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAH 1713
DS+ CDVVPM AC + LGRPWQ+D+ +H G+ N YSF+ +G K+ L D
Sbjct: 562 DSINCDVVPMQACSIFLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDEL 621
Query: 1714 PRVLSISYSAFARA----------------------------MDASSFVLLLVSRDVSES 1809
R R+ + S F+ D ++
Sbjct: 622 ARASKQKNQEHTRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDT 681
Query: 1810 PNV-----------------PSVVAPLLSEFADIFPDELP----PGLPPLRMIQHQIDFI 1926
V P + P ++ + D P PGLPP+R I+HQID I
Sbjct: 682 DTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLI 741
Query: 1927 PGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVD 2106
PGA LPNR YR +P E +E++RQ++ELL +G++RESLSPC++P LL+PKKDG+WRMCVD
Sbjct: 742 PGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSIPVLLVPKKDGSWRMCVD 801
Query: 2107 SRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREG 2286
RA+N IT+RY PIPRLDD+LD+L G+ VFSK+DL+SGYHQIR++ GDEWKTAFKT+ G
Sbjct: 802 CRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFG 861
Query: 2287 LFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLS 2466
L+EWLVMPFGL+NAPSTF+R+MN+ LR IG VVVYFDDIL+YS+S+ DH HLRAV
Sbjct: 862 LYEWLVMPFGLTNAPSTFIRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFD 921
Query: 2467 ILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHG 2646
LR E + KC F T+ V FLGY V+ GI VD AK+ AI WPVPTT+T+VRSF G
Sbjct: 922 ALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLG 981
Query: 2647 LASFYRRFIPHFSTIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVP 2823
LA FYRRF+ FSTI AP+ +L +F+W AF +K KLTHAPLL LPDF+
Sbjct: 982 LAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKT 1041
Query: 2824 FELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFH 3003
FEL DAS +G+G VL Q G PI YFSEKL+ YSTYD E +A+VR + W+HYL+
Sbjct: 1042 FELECDASGIGLGGVLLQEGKPIEYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWP 1101
Query: 3004 REFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLL 3183
+EF++++DHE+LKHI SQ L+ RHA W F++ F +V+KH+ G N +ADALSRR+++L
Sbjct: 1102 KEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAML 1161
Query: 3184 VDMRIEVPGFDSFRELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLR 3360
+ ++ G ++ +E YA D FK +L + G + F+L +GF+F+ LC+P S+R
Sbjct: 1162 SQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVR 1221
Query: 3361 LRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGL 3531
+ L+ E H GH G ++ D++ +FWP +RRDV RFVARC CQ +K GL
Sbjct: 1222 MLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGL 1281
Query: 3532 YRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQL 3711
Y PLP+PS PW +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DA HVA L
Sbjct: 1282 YMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADL 1341
Query: 3712 FFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSL 3891
FFRE+ RLHG+P +IVSDRDT+FLSHFWR+LW+ T+L FS+ HPQTDGQTEVVNR+L
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTL 1401
Query: 3892 GNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPS 4065
+LR ++ + W+ L EFA+N + + +T PF++VYG LPRAP+DLL LP+
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPT 1459
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 1068 bits (2763), Expect = 0.0
Identities = 575/1318 (43%), Positives = 785/1318 (59%), Gaps = 95/1318 (7%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
K IP F G D D +L W +++D+ D P ++ V + AS WW + +R
Sbjct: 156 KFTIPCFDGKYDPDAYLTWELAIDQKFACHDFPENKCVRAATSEFTDFASIWWSEF--VR 213
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
S + T WD K +R F+P ++R L K QQLRQG+++++ Y ++R
Sbjct: 214 SNPNNTPQT-WDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQTGMLRCG 272
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLL-RRSPF------- 912
+ E DD ++R++GGL + QD+L +S++ A E+++ RR+ F
Sbjct: 273 LVENDDAGMARFMGGLNREIQDILTYKEYNSINHLFHLACKAEREVQGRRASFRTNISAG 332
Query: 913 -----------------PLPSSGNHFDRSPTGSQIKPAPTLPSGSRAQGDLGFLXXXXXX 1041
PSS ++ R P+ + P P+ P+ A
Sbjct: 333 RASSWTSSNAAAPSTRAAAPSSSSNKLR-PSTTNSTPCPSEPTRGVAATPS---KTSSSV 388
Query: 1042 XXXXXXXXXXCFNCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISA----- 1206
C C H++ CP STR + V D +SS+ D + A
Sbjct: 389 ASSGRTRDIQCLRCKGYGHVRKDCP---STRVMIVR--ADGGYSSASDLDGETYALLATN 443
Query: 1207 --------QPPEEFLHGDVGQ---LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKIC 1353
EE + + + LV+QRV L+ + E + QRH LF++ C ++ + C
Sbjct: 444 NAREGDAPHQDEEHIGAEAAEHYESLVVQRV-LSAQMERAEQNQRHTLFQTKCVIKERSC 502
Query: 1354 RFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYT 1533
R IID GSC N+ +A+ ++KL LST+PHP PY + WL ++ VTR V + F+I G Y
Sbjct: 503 RVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI-GSYH 561
Query: 1534 DSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAH 1713
DS+ CDVVPM AC +LLGRPWQ+D+ +H G+ N YSF+ +G K+ L D
Sbjct: 562 DSINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDEL 621
Query: 1714 PRVLSISYSAFARA----------------------------MDASSFVLLLVSRDVSES 1809
R R+ + S F+ D ++
Sbjct: 622 ARASKQKNQEHTRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDT 681
Query: 1810 PNV-----------------PSVVAPLLSEFADIFPDELP----PGLPPLRMIQHQIDFI 1926
V P + P ++ + D P PGLPP+R I+HQID I
Sbjct: 682 DTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLI 741
Query: 1927 PGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVD 2106
PGA LPNR YR +P E +E++RQ++ELL +G++RESLSPC+VP LL+PKKDG+WRMCVD
Sbjct: 742 PGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVD 801
Query: 2107 SRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREG 2286
RA+N IT+RY PIPRLDD+LD+L G+ VFSK+DL+SGYHQIR++ GDEWKTAFKT+ G
Sbjct: 802 CRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFG 861
Query: 2287 LFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLS 2466
L+EWLVMPFGL+NAPSTFMR+MN+ LR IG VVVYFDDIL+YS+S+ DH HLRAV
Sbjct: 862 LYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFD 921
Query: 2467 ILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHG 2646
LR + KC F T+ V FL Y V+ GI VD AK+ AI +WPVPTT+T+VRSF G
Sbjct: 922 ALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIEVDQAKVEAIHNWPVPTTITQVRSFLG 981
Query: 2647 LASFYRRFIPHFSTIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVP 2823
LA FYRRF+ FSTI AP+ +L +F+W AF +K KLTHAPLL LPDF+
Sbjct: 982 LAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKT 1041
Query: 2824 FELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFH 3003
FE DAS +G+G VL Q G P+AYFSEKL+ YSTYD E +A+VR + W+HYL+
Sbjct: 1042 FEHECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWP 1101
Query: 3004 REFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLL 3183
+EF++++DHE+LKHI SQ L+ RHA W F++ F +V+KH+ G N +ADALSRR+++L
Sbjct: 1102 KEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAML 1161
Query: 3184 VDMRIEVPGFDSFRELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLR 3360
+ ++ G ++ +E YA D FK +L + G + F+L +GF+F+ LC+P S+R
Sbjct: 1162 SQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVR 1221
Query: 3361 LRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGL 3531
+ L+ E H GH G ++ D++ +FWP +RRDV RFVARC CQ +K GL
Sbjct: 1222 MLLLQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGL 1281
Query: 3532 YRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQL 3711
Y PLP+PS PW +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DA HVA L
Sbjct: 1282 YMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADL 1341
Query: 3712 FFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSL 3891
FFRE+ RLHG+P +IVSDRDT+FLSHFWR+LW+ T+ FS+ HPQTDGQTEVVNR+L
Sbjct: 1342 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTL 1401
Query: 3892 GNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPS 4065
+LR ++ + W+ L EFA+N + + +T PF++VYG LPRAP+DLL P+
Sbjct: 1402 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPT 1459
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 1067 bits (2760), Expect = 0.0
Identities = 575/1336 (43%), Positives = 784/1336 (58%), Gaps = 91/1336 (6%)
Frame = +1
Query: 331 HKDDLRGDNGKHDDSRRWEH--SFKIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADR 504
H + G + H R +H K++IP F G D +L W + ++ P DR
Sbjct: 162 HGYNRNGRDAPHPQVRDHDHLPKVKLNIPSFDGRYVPDLYLTWELETEQRFTCLQFPEDR 221
Query: 505 RVALVVTRLRGRASAWWQQLKTMRSRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQ 684
RVA V A WW + + +W KT +R ++P Y R L Q Q
Sbjct: 222 RVAAAVCSFTSFACIWWSEYCRIHHANIP---ATWAALKTAMRTRWVPPYYQRDLLQNLQ 278
Query: 685 QLRQGSRTIDAYSDEFYQLLVRSDVRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAH 864
+LRQG ++++ Y E ++R + E ++ +++R++GGL Q +L ++++
Sbjct: 279 RLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFMGGLNRDIQTILEYKDYNTITRLF 338
Query: 865 QRAV-----LYEKQLLRRSPFPLPSSGNHFDRSPTGSQIKPAPT---------------- 981
A + ++Q L R+ F + + R+ + S PA
Sbjct: 339 HLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTSTRPPASAPPVSAANSTRDTRKQA 398
Query: 982 -LPSGSRAQGDLGFLXXXXXXXXXXXXXXXXCFNCGDPSHLQSACPKRASTRALYVDDVC 1158
PS +++ C C H CP S R + + +
Sbjct: 399 PAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKGGGHYARECP---SKRVMIITE-- 453
Query: 1159 DADFSSSPVYDDDISAQPPEEFL---------------HGDVGQLLVLQRVCLTPRREDD 1293
D + S+ YD++ A E + D + LV QRV L+ +
Sbjct: 454 DGGYDSASDYDEETLALIASEERGVXDTAQETQYMAADYADRYESLVAQRV-LSVQVTQV 512
Query: 1294 DSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRD 1473
+ QRH LF + V+ + R IID GSC N+ + + ++KL+L+T PHP PY + W
Sbjct: 513 EQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNS 572
Query: 1474 NEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLF 1653
++ VTR V + FSI Y+D V CDVVPM AC +LLGRPWQ+D+ +H GR N Y+ +
Sbjct: 573 GKVKVTRTVRVHFSIA-TYSDFVDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVH 631
Query: 1654 HGVKVTLLXXXXXXXXTDAHPRVLSI------------------------SYSAFARAMD 1761
+TLL D R S S+ A +
Sbjct: 632 KDQNITLLPMSPEHIMKDDIARASKAKQDLHKSENQIVAKEFEQHNKPNKSSSSVASEIK 691
Query: 1762 ASSFVLLLVSRDVSE-----------------------SPNVPSVVAPLLSEFADIFPDE 1872
S LL D+++ ++P V +L EFAD+FP +
Sbjct: 692 LKSGCLLATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQD 751
Query: 1873 LPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCA 2052
+PPGLPP+R I+HQID IPGA LPNR YR +P E +E+ RQ++ELL +G+IRESLSPCA
Sbjct: 752 VPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCA 811
Query: 2053 VPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQ 2232
VP +L+PKKDG RMCVD R +N IT+RY PIPRLDD+LD+L G+ +FSK+DL+SGYHQ
Sbjct: 812 VPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQ 871
Query: 2233 IRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDIL 2412
IR++ GDEWKTAFKT+ GL+EWLVMPFGL+NAPSTFMR+MN+ LR IG VVVYFDDIL
Sbjct: 872 IRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDIL 931
Query: 2413 VYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAA 2592
+YS+S+ DHL HLRAV + LR + KC F T+ V FLGY V+ GI VD AKI A
Sbjct: 932 IYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEA 991
Query: 2593 IQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDL-MHGKSFSWPTQAATAFTDI 2769
I+ WP P T+T+VRSF GLA FYRRF+ FSTI AP+ +L +SW T AFT +
Sbjct: 992 IESWPQPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVL 1051
Query: 2770 KHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDI 2949
K KLTHAPLL LPDF+ FEL DAS +G+G VL Q G P+AYFSEKL+ YSTYD
Sbjct: 1052 KDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDK 1111
Query: 2950 EFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQ 3129
E YA+VR + W+HYL+ +EF++++DHE+LKHI SQ L+ RHA W F++ F +V+K +
Sbjct: 1112 ELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKDK 1171
Query: 3130 SGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLARGDA-SDFILH 3306
G N +ADALSRR+++L + ++ G ++ ++ Y D+ FK +L + G + FI++
Sbjct: 1172 KGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIIN 1231
Query: 3307 DGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFV 3477
+GF+F+ LC+P S+RL L+ E H GH G + D++ +FWP +RRDV RFV
Sbjct: 1232 NGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFV 1291
Query: 3478 ARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKM 3657
ARC CQ +K GLY PLP+PS PW +SMDFVLGLPRT++G DSIFVVVDRFSKM
Sbjct: 1292 ARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKM 1351
Query: 3658 VHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFS 3837
HFIPC +S DA +VA LFFRE+ RLHG+P +IVSDRD +FLSHFWR LW+ T+L FS
Sbjct: 1352 AHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFS 1411
Query: 3838 SAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVV 4017
+ HPQTDGQTEVVNRSL +LR ++ + W+ L EFA+N +L+ +T + PF++V
Sbjct: 1412 TTCHPQTDGQTEVVNRSLSTMLRAVLKTNLKLWEECLPHIEFAYNRSLHSTTKMCPFEIV 1471
Query: 4018 YGFLPRAPVDLLTLPS 4065
YGFLPRAP+DLL +PS
Sbjct: 1472 YGFLPRAPIDLLPIPS 1487
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 1066 bits (2756), Expect = 0.0
Identities = 574/1336 (42%), Positives = 783/1336 (58%), Gaps = 91/1336 (6%)
Frame = +1
Query: 331 HKDDLRGDNGKHDDSRRWEH--SFKIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADR 504
H + G + H R +H K++IP F G D +L W + ++ P DR
Sbjct: 165 HGYNRNGRDAPHPQVRDHDHLPKVKLNIPSFDGRYVPDLYLTWELETEQRFTCLQFPEDR 224
Query: 505 RVALVVTRLRGRASAWWQQLKTMRSRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQ 684
RVA V A WW + + +W KT +R ++P Y R L Q Q
Sbjct: 225 RVAAAVCSFTSFACXWWSEYCRIHHANIP---ATWAALKTAMRTRWVPPYYQRDLLQNLQ 281
Query: 685 QLRQGSRTIDAYSDEFYQLLVRSDVRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAH 864
+LRQG ++++ Y E ++R + E ++ +++R++GGL Q +L +++
Sbjct: 282 RLRQGKKSVEEYYQELQTGMIRCGIVEDNEAMLARFMGGLNRDIQTILEYKDYXTITRLF 341
Query: 865 QRAV-----LYEKQLLRRSPFPLPSSGNHFDRSPTGSQIKPAPT---------------- 981
A + ++Q L R+ F + + R+ + S PA
Sbjct: 342 HLACKAEREVQDRQALARTNFSAGRTSSWTPRTTSTSTRPPASAPPVSAASSTRDTRKQA 401
Query: 982 -LPSGSRAQGDLGFLXXXXXXXXXXXXXXXXCFNCGDPSHLQSACPKRASTRALYVDDVC 1158
PS +++ C C H CP S R + + +
Sbjct: 402 PAPSFAKSTPSGPAQSSSSSTASTGQTHEVICRRCKGGGHYARECP---SKRVMIITE-- 456
Query: 1159 DADFSSSPVYDDDISAQPPEEFL---------------HGDVGQLLVLQRVCLTPRREDD 1293
D + S+ YD++ A E + D + LV QRV L+ +
Sbjct: 457 DGGYDSASDYDEETLALIASEERGVADTAQETQYMAADYADRYESLVAQRV-LSVQVTQV 515
Query: 1294 DSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRD 1473
+ QRH LF + V+ + R IID GSC N+ + + ++KL+L+T PHP PY + W
Sbjct: 516 EQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLTTRPHPHPYYIQWFNNS 575
Query: 1474 NEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLF 1653
++ VTR V + FSI Y+D V CDVVPM AC +LLGRPWQ+D+ +H GR N Y+ +
Sbjct: 576 GKVKVTRTVRVHFSIA-TYSDFVDCDVVPMQACSVLLGRPWQFDKNSVHHGRTNQYTLVH 634
Query: 1654 HGVKVTLLXXXXXXXXTDAHPRVLSI------------------------SYSAFARAMD 1761
+TLL D R S S+ A +
Sbjct: 635 KDQNITLLPMSPEHIMKDDIARASKAKQDLHKSENQIVAKEFEQHNKPNKSSSSVASEIK 694
Query: 1762 ASSFVLLLVSRDVSE-----------------------SPNVPSVVAPLLSEFADIFPDE 1872
S LL D+++ ++P V +L EFAD+FP +
Sbjct: 695 LKSGCLLATKSDITDLDITTSVCYAFVCKEVLFSFEDMPSSLPPAVINILQEFADVFPQD 754
Query: 1873 LPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCA 2052
+PPGLPP+R I+HQID IPGA LPNR YR +P E +E+ RQ++ELL +G+IRESLSPCA
Sbjct: 755 VPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCA 814
Query: 2053 VPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQ 2232
VP +L+PKKDG RMCVD R +N IT+R PIPRLDD+LD+L G+ +FSK+DL+SGYHQ
Sbjct: 815 VPIILVPKKDGTSRMCVDCRGINNITIRXRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQ 874
Query: 2233 IRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDIL 2412
IR++ GDEWKTAFKT+ GL+EWLVMPFGL+NAPSTFMR+MN+ LR IG VVVYFDDIL
Sbjct: 875 IRMKLGDEWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDIL 934
Query: 2413 VYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAA 2592
+YS+S+ DHL HLRAV + LR + KC F T+ V FLGY V+ GI VD AKI A
Sbjct: 935 IYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEA 994
Query: 2593 IQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDL-MHGKSFSWPTQAATAFTDI 2769
I+ WP P T+T+VRSF G A FYRRF+ FSTI AP+ +L +SW T AFT +
Sbjct: 995 IESWPQPKTVTQVRSFLGXAGFYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVL 1054
Query: 2770 KHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDI 2949
K KLTHAPLL LPDF+ FEL DAS +G+G VL Q G P+AYFSEKL+ YSTYD
Sbjct: 1055 KDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDK 1114
Query: 2950 EFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQ 3129
E YA+VR + W+HYL+ +EF++++DHE+LKHI SQ L+ RHA W F++ F +V+KH+
Sbjct: 1115 ELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHK 1174
Query: 3130 SGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLARGDA-SDFILH 3306
G N +ADALSRR+++L + ++ G ++ ++ Y D+ FK +L + G + FI++
Sbjct: 1175 KGKDNVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIIN 1234
Query: 3307 DGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFV 3477
+GF+F+ LC+P S+RL L+ E H GH G + D++ +FWP +RRDV RFV
Sbjct: 1235 NGFVFRANKLCIPASSIRLLLLQEAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFV 1294
Query: 3478 ARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKM 3657
ARC CQ +K GLY PLP+PS PW +SMDFVLGLPRT++G DSIFVVVDRFSKM
Sbjct: 1295 ARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKM 1354
Query: 3658 VHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFS 3837
HFIPC +S DA +VA LFFRE+ RLHG+P +IVSDRD +FLSHFWR LW+ T+L FS
Sbjct: 1355 AHFIPCHKSDDAANVADLFFREIIRLHGVPNTIVSDRDAKFLSHFWRCLWAKLGTKLLFS 1414
Query: 3838 SAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVV 4017
+ HPQTDGQTEVVNRSL +LR ++ + + W+ L EFA+N +L+ +T + PF++V
Sbjct: 1415 TTCHPQTDGQTEVVNRSLSTMLRAVLKNNIKLWEECLPHIEFAYNRSLHSTTKMCPFEIV 1474
Query: 4018 YGFLPRAPVDLLTLPS 4065
YGFLPRAP+DLL +PS
Sbjct: 1475 YGFLPRAPIDLLPIPS 1490
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 1063 bits (2750), Expect = 0.0
Identities = 575/1343 (42%), Positives = 788/1343 (58%), Gaps = 92/1343 (6%)
Frame = +1
Query: 313 PFAQFAHKDDLRGDNGK-HDDSRRWEH--SFKIDIPEFHGTLDADEFLDWMVSVDEILDF 483
P Q + + NG+ H R +H K++IP F G D +L W + ++
Sbjct: 145 PAQQLSGRPHANNGNGRAHPQVRDHDHLPKLKLNIPPFEGRYVPDIYLTWELETEQQFTC 204
Query: 484 KDVPADRRVALVVTRLRGRASAWWQQLKTMRSRQSKPKLTSWDKFKTKLRNEFLPFNYSR 663
P +RRV V A WW + + P +W KT +R ++P Y
Sbjct: 205 LQYPEERRVPAAVCAFTSFACVWWSEHCRLY-----PIPATWAALKTAMRTRWVPPYYQH 259
Query: 664 TLYQKFQQLRQGSRTIDAYSDEFYQLLVRSDVRETDDQLVSRYIGGLRLQYQDVLNMFSP 843
L QK Q+LRQG +++ Y E ++R + E ++ +++R++GGL + Q +L
Sbjct: 260 ELLQKLQRLRQGKNSVEEYYQELQTGMIRCGIVEENEAMLARFMGGLNREIQTILEYKDY 319
Query: 844 SSVSEAHQRAV-----LYEKQLLRRSPFPLPSSGNHFDRSPTGSQIKPAPTLPSGS---- 996
++++ A + ++Q L R+ F + R+ + S P PS +
Sbjct: 320 TNITRLFHLACKAEREVQDRQALARTNFSAGRPSSWTPRASSTSTRSATPAPPSAATSNR 379
Query: 997 ----RAQGDLGFLXXXXXXXXXXXXXXXX--------CFNCGDPSHLQSACPKRASTRAL 1140
+AQ L C C H CP S R +
Sbjct: 380 DTIKQAQSPLSAKSTPSGPAKSSSSSMASTGQTHDIICRRCKGGGHYARECP---SKRVM 436
Query: 1141 YVDDVCDADFSSSPVYDDDISAQPPEEFLHGDVG---------------QLLVLQRVCLT 1275
V + D + S+ YD++ A + GD + LV QRV L+
Sbjct: 437 IVSE--DGGYESASDYDEETLALITRDKHGGDDSDHETQYMAPEDADRYECLVAQRV-LS 493
Query: 1276 PRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSL 1455
+ + QRH LF + V+ + R IID GSC N+ + + ++KL+L T PHP PY +
Sbjct: 494 VQVTQAEQNQRHNLFHTKGVVKERSVRVIIDGGSCNNLASMEMVEKLSLITRPHPHPYYI 553
Query: 1456 AWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQN 1635
W ++ VTR V + FSI Y D V CDVVPM AC LLLGRPWQ+D+ +H R+N
Sbjct: 554 QWFNNSGKVKVTRTVRVHFSIS-TYADYVDCDVVPMQACSLLLGRPWQFDKNSVHHDRKN 612
Query: 1636 TYSFLFHGVKVTLLXXXXXXXXTD--------------AHPRVLSISY-----------S 1740
Y+ + +TLL D + ++++ + S
Sbjct: 613 LYTLVHKDKNITLLPMTPESILKDDINRANKAKQEKNKSENQIVAKEFEQQMQSNNNKQS 672
Query: 1741 AFARAMDASSFVLLLVSRDVSE-----------------------SPNVPSVVAPLLSEF 1851
+ A + S LL D+ + ++P V +L EF
Sbjct: 673 SVACEIKLKSACLLATKSDIDDLDFSKSVCYAFVCKEALFSFEDVPSSLPPAVTNILQEF 732
Query: 1852 ADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIR 2031
D+FP ++PPGLPP+R I+HQID IPGA LPNR YR +P E +E+ RQ++ELL +G+IR
Sbjct: 733 TDVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIR 792
Query: 2032 ESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLD 2211
ESLSPCAVP +L+PKKDG RMCVD R +N IT+RY PIPRLDD+LD+L G+T+FSK+D
Sbjct: 793 ESLSPCAVPIILVPKKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSTIFSKVD 852
Query: 2212 LKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVV 2391
L+SGYHQIR++ GDEWKT FKT+ GL+EWLVMPFGL+NAPSTFMR+MN+ LR IG VV
Sbjct: 853 LRSGYHQIRMKLGDEWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVV 912
Query: 2392 VYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGV 2571
VYFDDIL+YSKS+ +HL HLRAV LR + KC F T+ V FLGY V+ GI V
Sbjct: 913 VYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEV 972
Query: 2572 DDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDL-MHGKSFSWPTQA 2748
D AKI AI+ WP P T+T+VRSF GLA FYRRF+ FSTI AP+ ++ F W T
Sbjct: 973 DKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRFVRDFSTIAAPLNEVTKKDVPFVWGTAQ 1032
Query: 2749 ATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRG 2928
AFT +K KLT+APLL LP+F+ FEL DAS +G+G VL Q G P+AYFSEK +
Sbjct: 1033 EEAFTVLKDKLTYAPLLQLPNFNKTFELECDASGIGLGGVLLQDGKPVAYFSEKFSGPSL 1092
Query: 2929 RYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQF 3108
YSTYD E YA+VR + W+HYL+ +EF++++DHE+LKHI SQ L+ RHA W F++ F
Sbjct: 1093 NYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETF 1152
Query: 3109 TFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLARGDA 3288
+V+KH+ G N +ADALSRR+++L + ++ G ++ ++ Y D+ FK +L + G
Sbjct: 1153 PYVIKHKKGKENVIADALSRRYTMLSQLDFKIFGLETIKDQYVHDAEFKDVLQNCKEGRT 1212
Query: 3289 -SDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLR 3456
+ F+L+DGF+F+ LC+P S+RL L+ E H GH G ++ D++ +FWP +R
Sbjct: 1213 WNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGLMGHFGVKKTEDILATHFFWPKMR 1272
Query: 3457 RDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVV 3636
RDV RFVARC CQ +K GLY PLP+PS PW +SMDFVLGLPRT++G DSIFVV
Sbjct: 1273 RDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVV 1332
Query: 3637 VDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMA 3816
VDRFSKM HFIPC +S DAV+VA LFFRE+ RLHG+P +IVSDRDT+FLSHFWR LW+
Sbjct: 1333 VDRFSKMAHFIPCHKSDDAVNVADLFFREIIRLHGVPNTIVSDRDTKFLSHFWRCLWAKL 1392
Query: 3817 NTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTG 3996
+L FS+ HPQTDGQTEVVNR+L +LR ++ + + W+ L EFA+N +L+ +T
Sbjct: 1393 GNKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTK 1452
Query: 3997 LSPFQVVYGFLPRAPVDLLTLPS 4065
+ PF++VYGFLPRAP+DLL LPS
Sbjct: 1453 MCPFEIVYGFLPRAPIDLLPLPS 1475
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 1060 bits (2741), Expect = 0.0
Identities = 573/1317 (43%), Positives = 782/1317 (59%), Gaps = 94/1317 (7%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
K IP F G D D +L W +++ + D P ++RV + AS WW + +R
Sbjct: 156 KFTIPCFDGKYDPDAYLTWELAIVQKFACHDFPENKRVRAATSEFTDFASIWWSEF--VR 213
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
S + T WD K +R F+P ++R L K QQLRQG+++++ Y ++R
Sbjct: 214 SNPNNTPQT-WDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRCG 272
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLL-RRSPF------- 912
+ E DD ++R++GGL + QD+L +S++ A E+++ RR+ F
Sbjct: 273 LVENDDAGMARFMGGLNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAG 332
Query: 913 -----------------PLPSSGNHFDRSPTGSQIKPAPTLPSGSRAQGDLGFLXXXXXX 1041
PS ++ R P+ + P P+ P+ A
Sbjct: 333 CASSWTSSNAAAPSTRAAAPSCSSNKLR-PSTTNSTPCPSEPTRGVAATPS---KSSSSV 388
Query: 1042 XXXXXXXXXXCFNCGDPSHLQSACPKRASTRALYV------------DDVCDADFSSSPV 1185
C C H++ CP STR + V D+ A +++
Sbjct: 389 ASSGRTRDIQCLRCKGYGHVRKDCP---STRVMIVRADGGYYFDSDLDEETYALLATNNA 445
Query: 1186 YDDDISAQPPEEFLHGDVGQ---LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICR 1356
+ D Q EE + + + LV+QRV L+ + E + Q H LF++ C ++ + C
Sbjct: 446 GEGDAPHQD-EEHIRAEAAEHYESLVVQRV-LSAQMERAEQNQLHTLFQTKCVIKERSCH 503
Query: 1357 FIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTD 1536
IID GSC N+ +A+ ++KL LST+PHP PY + WL ++ VTR V + F+I G Y D
Sbjct: 504 VIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFAI-GSYHD 562
Query: 1537 SVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHP 1716
S+ CDVVPM AC +LLGRPWQ+D+ +H G+ N YSF+ +G K+ L D
Sbjct: 563 SINCDVVPMQACSMLLGRPWQFDKDSLHFGKSNQYSFVHNGKKLVLHPMSPEVILKDELA 622
Query: 1717 RVLSISYSAFARA----------------------------MDASSFVLLLVSRDVSESP 1812
R R+ + S F+ D ++
Sbjct: 623 RASKQKNQEHTRSEHLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTD 682
Query: 1813 NV-----------------PSVVAPLLSEFADIFPDELP----PGLPPLRMIQHQIDFIP 1929
V P + P ++ + D P PGLPP+R I+HQID IP
Sbjct: 683 TVFCYALVCKETLFPIEDTPISLRPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIP 742
Query: 1930 GAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDS 2109
GA LPNR YR +P E +E++RQ++ELL +G++RESLSPC+VP LL+PKKDG+WRMCVD
Sbjct: 743 GASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVDC 802
Query: 2110 RALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGL 2289
RA+N IT+RY PIPRLDD+LD+L G+ VFSK+DL+SGYHQIR++ GDEWKTAFKT+ GL
Sbjct: 803 RAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGDEWKTAFKTKFGL 862
Query: 2290 FEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSI 2469
+EWLVMPFGL+NAPSTFMR+MN+ LR IG VVVYFDDIL+YS+S+ DH HLRAV
Sbjct: 863 YEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFDA 922
Query: 2470 LRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGL 2649
LR + KC F T+ V FLGY V+ GI VD AK+ AI WPVPTT+T+VRSF GL
Sbjct: 923 LRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGL 982
Query: 2650 ASFYRRFIPHFSTIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPF 2826
A FYRRF+ FSTI AP+ +L +F+W AF +K KLTHAPLL LPDF+ F
Sbjct: 983 AGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTF 1042
Query: 2827 ELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHR 3006
EL DAS +G+G VL Q G P+AYFSEKL+ YSTYD E +A+VR + W+HYL+ +
Sbjct: 1043 ELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPK 1102
Query: 3007 EFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLV 3186
EF++++DHE+LKHI SQ + RHA W F++ F +V+KH+ G N +ADALSRR+++L
Sbjct: 1103 EFVIHSDHESLKHIRSQAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLS 1162
Query: 3187 DMRIEVPGFDSFRELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLRL 3363
+ ++ G ++ +E YA D FK +L + G + F+L +GF+F+ LC+P S+ +
Sbjct: 1163 QLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHM 1222
Query: 3364 RLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLY 3534
L+ E H GH G + D++ +FWP RRDV RFVARC CQ +K GLY
Sbjct: 1223 LLLQEAHGGGLMGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLY 1282
Query: 3535 RPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLF 3714
PLP+PS PW +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DA HVA LF
Sbjct: 1283 MPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLF 1342
Query: 3715 FREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLG 3894
FRE+ RLHG+P +IVSDRDT+FLSHFWR+LW+ T+L FS+ HPQTDGQTEVVNR+L
Sbjct: 1343 FREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLS 1402
Query: 3895 NLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPS 4065
+LR ++ + W+ L EFA+N + + +T PF++VYG LPRAP+DLL LP+
Sbjct: 1403 TMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPT 1459
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 1054 bits (2725), Expect = 0.0
Identities = 556/1233 (45%), Positives = 756/1233 (61%), Gaps = 11/1233 (0%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
KI IP F GT D DE+L+W ++ + + + + +V + T + A +WW QL T R
Sbjct: 438 KIRIPSFKGTNDPDEYLEWEKKIELVFNCQQYTEESKVKVAPTEFQNYALSWWDQLVTTR 497
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
R + SW + KT +R F+P +Y R L+ + + L QG+++++ Y E L++R+D
Sbjct: 498 RRAGDYPIESWTQMKTIMRKRFVPSHYYRELHNRLRNLVQGNKSVEEYYKEMETLMLRAD 557
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLLRRSPFPLPSSGN- 933
++E ++ ++SR++GGL D L + + E +A+++EKQL RRS P SG
Sbjct: 558 IQEDNEAIMSRFMGGLNRDIIDRLEVQHYVELEELLHKAIMFEKQLKRRSSKPSFGSGKP 617
Query: 934 --HFDRSPTGSQIKPAPTLPSGSRAQGDLGFLXXXXXXXXXXXXXXXXCFNCGDPSHLQS 1107
H D +G Q P + Q G F C H S
Sbjct: 618 SYHKDER-SGFQKDYKPFIKPKVEDQDQKG-----KGKAVMTRTRDIKGFKCQGHGHYAS 671
Query: 1108 ACPKRASTRALYVDDVCDADFSSSPVYDDDISAQPPEEFLHGDVGQLLVLQRVCLTPRRE 1287
C + R + + D + + + + + E++ G+LLV + L+ +
Sbjct: 672 ECSNK---RIMIIKDTGEIESEDEQLEESSST----EDYEAPSKGELLVTMKA-LSVIAK 723
Query: 1288 DDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQ 1467
D+ QR LF S+C V K+C IID GSC NV + ++KL L HP PY L WL
Sbjct: 724 TDEQEQRENLFHSSCMVNDKVCSLIIDGGSCTNVASETMVEKLGLKVMKHPRPYKLQWLN 783
Query: 1468 RDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYDRGVIHDGRQNTYSF 1647
D E++V R+V + SIG K +VPM
Sbjct: 784 EDGEMSVDRQVKVPLSIGKKTI------LVPMTP-------------------------- 811
Query: 1648 LFHGVKVTLLXXXXXXXXTDAHPRVLSISYSAFARAMDASSFVLLLVSRDVSESPN---- 1815
H V + L T P L I+ S + SS +L + + N
Sbjct: 812 --HEVYLDQLSMKMRKKQT-VKPSNLMINESKQKGSGFQSSKLLFVFKETLMSLTNPEQA 868
Query: 1816 VPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKLPNRPHYRMSPSEHEELRR 1995
+PS + LL ++ D+FP+E P GLPP+R I+HQIDF+PGA LPNRP YR +P E +EL +
Sbjct: 869 IPSKIKFLLQDYTDVFPEENPVGLPPIRGIEHQIDFVPGASLPNRPAYRTNPVETKELEK 928
Query: 1996 QIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALNKITVRYSFPIPRLDDLLD 2175
Q+ EL+ RGHIRES+SPCAVP LL+PKKDG+WRMCVD RA+N ITV+Y PIPRLDD+LD
Sbjct: 929 QVTELMERGHIRESMSPCAVPVLLVPKKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLD 988
Query: 2176 QLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWLVMPFGLSNAPSTFMRIMN 2355
+L G+++FSK+DLKSGYHQIR++ GDEWKTAFKT +GL+EWLVMPFGL+NAPSTFMR+MN
Sbjct: 989 ELHGSSIFSKVDLKSGYHQIRMKEGDEWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMN 1048
Query: 2356 QTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTECFYAAPSKCVFLTENVLF 2535
LR IG V+VYFDDILVYSKS+ +H+ HL+ VL +LR E YA KC F T+N++F
Sbjct: 1049 HVLRAFIGRFVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVF 1108
Query: 2536 LGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFYRRFIPHFSTIMAPITDLM 2715
LG+ VS G+ VD+ K+ AI++WP P ++ EVRSFHGLA FYRRF+ FST+ AP+T+++
Sbjct: 1109 LGFVVSTDGVKVDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRFVKDFSTLAAPLTEVI 1168
Query: 2716 -HGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSDASKVGIGAVLSQHGHPI 2892
F W AF +K KLTHAP+L+LPDF FE+ DAS VGIG VL Q PI
Sbjct: 1169 KKNVGFKWEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECDASGVGIGVVLMQDKKPI 1228
Query: 2893 AYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILYTDHEALKHINSQDSLSA 3072
AYFSEKL Y TYD E YA+VRA++ +HYL+ +EF+++TDHE+LKH+ Q L+
Sbjct: 1229 AYFSEKLGGATLNYPTYDKELYALVRALQTGQHYLWPKEFVIHTDHESLKHLKGQQKLNK 1288
Query: 3073 RHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIEVPGFDSFRELYATDSFF 3252
RHA W F++ F +V+K++ G N VADALSRR+ LL + ++ GF+ + LYA DS F
Sbjct: 1289 RHARWVEFIETFPYVIKYKKGKDNVVADALSRRYVLLSSLDAKLLGFEHIKSLYANDSDF 1348
Query: 3253 KIILSSLARGDASDFILHDGFLFKGICLCVPMCSLRLRLVAELHS---TGHVGRDRSIDL 3423
+ I SS + + HDGFLF LC+P SLR + E H GH G ++I +
Sbjct: 1349 EKIYSSCEKFAFGKYYRHDGFLFYDNRLCIPNSSLRELFIREAHGGGLMGHFGVSKTIKV 1408
Query: 3424 VRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIPSQPWGALSMDFVLGLPR 3603
++ + WP ++RDV R RC C+ +K S GLY PLPIPS PW +SMDFV+GLPR
Sbjct: 1409 MQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPR 1468
Query: 3604 TQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYRLHGLPVSIVSDRDTRFL 3783
T+ G DSIFVVVDRFSKM HFIPC ++ DA+H+A LFFREV RLHG+P +IVSDRDT+FL
Sbjct: 1469 TRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFREVVRLHGMPKTIVSDRDTKFL 1528
Query: 3784 SHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDTPRAWDIKLSQAEF 3963
S+FW++LWS T+L FS+ HPQTDGQTEVVNR+L LLR L+ + W+ L EF
Sbjct: 1529 SYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEF 1588
Query: 3964 AHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLP 4062
A+N +++ ++ SPFQ+VYGF P P+DL+ LP
Sbjct: 1589 AYNHSMHSASKFSPFQIVYGFNPTTPLDLMPLP 1621
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 1051 bits (2719), Expect = 0.0
Identities = 561/1322 (42%), Positives = 785/1322 (59%), Gaps = 78/1322 (5%)
Frame = +1
Query: 331 HKDDLR--GDNGKHDDSRRWEHSFKIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADR 504
H+DD R G+ G++ + K +P+F G D + +L W + VD+I + +
Sbjct: 117 HRDDRRHRGNRGRNQPNEERFGKLKFTMPKFEGGSDPEVYLTWELKVDKIFRLHNYSERK 176
Query: 505 RVALVVTRLRGRASAWWQQLKTMRSRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQ 684
+VA+ G A WW+Q+ R + + SW + K ++R F+P +Y R L+ K Q
Sbjct: 177 KVAMAALEFDGYALIWWEQMLNEREEAGQGDVRSWAEMKREMRARFVPKHYRRDLFDKLQ 236
Query: 685 QLRQGSRTIDAYSDEFYQLLVRSDVRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAH 864
L+QGS ++D Y E + ++R++V E ++Q ++R++ GL Q ++ ++ E
Sbjct: 237 NLKQGSLSVDEYYKEMEKAMIRANVYEDEEQSIARFMSGLHRNIQRIVEFQQYRNLIELV 296
Query: 865 QRAVLYEKQLL------RRSPFPLPSSGNHFDRSPTGSQIKPAPTLPSGSRAQGDLGFLX 1026
+A E+QL R F ++ + + GS + A + SG + G
Sbjct: 297 HQASKAERQLQQDMKSNRGVSFSTKNAASGSKFTSRGSGNRGAFSSSSGGARSSNYGTSS 356
Query: 1027 XXXXXXXXXXXXXXX----------------CFNCGDPSHLQSACPKRASTRALYVDDVC 1158
CF CG H+ CP + R + V+D
Sbjct: 357 GKDLAAPNERKNAANTSSTSVGSSTKSSGIQCFKCGGRGHVARECP---NNRTIVVNDQG 413
Query: 1159 DADFSSSPVYDDDISAQPPE-EFLHGDVGQLLVLQRVCLTPRREDDDSMQRHKLFESTCT 1335
+ + +S +D E + + G LV+ ++ L+ + D ++ QRH LF++
Sbjct: 414 EYESTSEEEQEDSEEENNLEKDICEFESGAALVVTQI-LSVQMSDAENGQRHNLFQTRAK 472
Query: 1336 VQGKICRFIIDSGSCENVVAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFS 1515
VQ K+ + IID GSC N+ + + ++KL L HP PY + WL I + +RV + F
Sbjct: 473 VQDKVVKVIIDGGSCHNLASKEMVEKLGLKLLKHPHPYHVQWLNNSGSIKIAQRVKVPFK 532
Query: 1516 IGGKYTDSVWCDVVPM-------------DACHLLLGRPWQYD----------------- 1605
IG +Y D++ CDV PM D L GR QY
Sbjct: 533 IG-EYIDTMECDVAPMTVCHMLLGRPWQYDRSSLHCGRTNQYTIKWKGKELILKPMTPQQ 591
Query: 1606 -------------RGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSAF 1746
+G++N S V + + V+ + S
Sbjct: 592 ILAEHLQKSSEVRNESAKEGQKNNLSAPHKSVSESHKPNMRDNKKREGENLVMIATKSEM 651
Query: 1747 ARAMDASSFVL-LLVSRDVSESPN----VPSVVAPLLSEFADIFPDELPPGLPPLRMIQH 1911
VL +LV +D S N VPSVVA +L E+ D+FP+E P GLPPLR I+H
Sbjct: 652 RDVRRNPEQVLFILVCKDTLLSANDLTSVPSVVARVLQEYEDVFPEETPVGLPPLRGIEH 711
Query: 1912 QIDFIPGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAW 2091
QID IPGA LPNRP YR +P E +E++RQ++ LL +G++RESLSPCAVP +L+PKKDG+W
Sbjct: 712 QIDLIPGATLPNRPAYRTNPEETKEIQRQVQALLDKGYVRESLSPCAVPVILVPKKDGSW 771
Query: 2092 RMCVDSRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAF 2271
RMCVD RA+N ITVRY PIPRLDD+LD+L G+ +FSK+DL+SG+HQIR++ GDEWKTAF
Sbjct: 772 RMCVDCRAINNITVRYRHPIPRLDDMLDELSGSMIFSKIDLRSGFHQIRMKIGDEWKTAF 831
Query: 2272 KTREGLFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHL 2451
KT+ GL+EWLVMPFGL+NAPSTFMR+MN LR IG VVVYFDDIL+YSK++ +H+AH+
Sbjct: 832 KTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYFDDILIYSKTLEEHVAHI 891
Query: 2452 RAVLSILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEV 2631
+ VL +LR E YA KC F T+ V+FLG+ VS GI VD++K+ AI+DWP P +++V
Sbjct: 892 QQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGIQVDESKVKAIKDWPTPENVSQV 951
Query: 2632 RSFHGLASFYRRFIPHFSTIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALP 2808
+SF GLA FYRRF+ FSTI AP+ +L G +F W AF ++K +L+ PLL LP
Sbjct: 952 KSFRGLAGFYRRFVRGFSTIAAPLNELTKKGVAFQWGEPQEKAFQELKKRLSEGPLLVLP 1011
Query: 2809 DFSVPFELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWR 2988
DF+ FE+ DAS +GIG VL Q+G P+AYFSEKL + YS YD E YA+VRA+ W+
Sbjct: 1012 DFTKTFEVECDASGIGIGGVLMQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQ 1071
Query: 2989 HYLFHREFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSR 3168
HYL+ +EF++++DHEALK++ Q L+ RHA W F++ F +VVK++ G N VADALSR
Sbjct: 1072 HYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSR 1131
Query: 3169 RHSLLVDMRIEVPGFDSFRELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVP 3345
++ LL + ++V G +S +ELY+ D F + G + +HDGFLF+ LCVP
Sbjct: 1132 KNVLLNQLEVKVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVP 1191
Query: 3346 MCSLRLRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTS 3516
CS+RL L+ E H+ GH G ++ D++ ++WP +RRDV R V RC C +K
Sbjct: 1192 HCSVRLLLLQETHAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKL 1251
Query: 3517 TNAGLYRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAV 3696
GLY PLP+PS PW +SMDFVLGLPRT+RG DSIFVVVDRFSKM HFIPC +S DA
Sbjct: 1252 NPHGLYTPLPVPSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDAS 1311
Query: 3697 HVAQLFFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEV 3876
H+A LFF E+ RLHG+P +IVSDRDT+FLS+FW++LW+ T L FS+ HPQTDGQTEV
Sbjct: 1312 HIASLFFSEIVRLHGMPKTIVSDRDTKFLSYFWKTLWAKLGTRLLFSTTCHPQTDGQTEV 1371
Query: 3877 VNRSLGNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLT 4056
VNR+L LLR L+ + W+ L EFA+N A++ +T + PF+VVYGF P +P+DLL
Sbjct: 1372 VNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYGFKPLSPIDLLP 1431
Query: 4057 LP 4062
LP
Sbjct: 1432 LP 1433
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 1020 bits (2637), Expect = 0.0
Identities = 552/1258 (43%), Positives = 760/1258 (60%), Gaps = 35/1258 (2%)
Frame = +1
Query: 397 KIDIPEFHGTLDADEFLDWMVSVDEILDFKDVPADRRVALVVTRLRGRASAWWQQLKTMR 576
K IP F G D D +L W +++D+ D P ++RV + AS WW + +R
Sbjct: 156 KFTIPCFDGKYDPDAYLTWELAIDQKFACHDFPENKRVRAATSEFTDFASIWWSEF--VR 213
Query: 577 SRQSKPKLTSWDKFKTKLRNEFLPFNYSRTLYQKFQQLRQGSRTIDAYSDEFYQLLVRSD 756
S + T WD K +R F+P ++R L K QQLRQG+++++ Y ++R
Sbjct: 214 SNPNNTPQT-WDAMKRVMRARFVPSYHARDLLHKLQQLRQGNKSVEEYYQALQIGMLRCG 272
Query: 757 VRETDDQLVSRYIGGLRLQYQDVLNMFSPSSVSEAHQRAVLYEKQLL-RRSPF------P 915
+ E DD ++R++G L + QD+L +S++ A E+++ RR+ F
Sbjct: 273 LVENDDAGMARFMGELNREIQDILAYKEYNSINRLFHLACKAEREVQGRRASFRTNISAA 332
Query: 916 LPSSGNHFDRSPTGSQIKPAPTLPSG------SRAQGDLGFLXXXXXXXXXXXXXXXXCF 1077
PSS ++ R P+ + P P+ P+ S++ + L C
Sbjct: 333 APSSSSNKLR-PSTTNSTPCPSEPTRGVAATPSKSSSSVASLGRTRDIQ---------CL 382
Query: 1078 NCGDPSHLQSACPKRASTRALYVDDVCDADFSSSPVYDDDISA-------------QPPE 1218
C H++ CP STR + V D +SS+ D++ A E
Sbjct: 383 RCKGYGHVRKDCP---STRVMIVR--ADGGYSSASDLDEETYALLATNNAGEGDAPHQDE 437
Query: 1219 EFLHGDVGQ---LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENV 1389
E + + + LV+QRV L+ + E + QRH LF++ C ++ + CR IID GSC N+
Sbjct: 438 EHIKAEAAEHYESLVVQRV-LSAQMERAEQNQRHTLFQTKCVIKERSCRVIIDGGSCNNL 496
Query: 1390 VAADAIQKLNLSTEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDA 1569
+A+ ++KL LST+PHP PY + WL S G ++T S
Sbjct: 497 ASAEMVEKLALSTQPHPQPYYIQWLN---------------SSGKEHTRSE--------- 532
Query: 1570 CHLLLGRPWQ-YDRGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSAF 1746
HL+ + + + + + N G TD +
Sbjct: 533 -HLIAANELEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTD----------TVV 581
Query: 1747 ARAMDASSFVLLLVSRDVSESPNVPSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFI 1926
A+ + + +S P V ++ L E+ADIFP E+PPGLPP+R I+HQID I
Sbjct: 582 CYALVCKETLFPIEDTPISLPPPVTNL----LQEYADIFPKEVPPGLPPIRGIEHQIDLI 637
Query: 1927 PGAKLPNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVD 2106
PGA LPNR YR +P E +E++RQ++ELL +G++RESLSPC+VP LL+PKKDG+WRMCVD
Sbjct: 638 PGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVPKKDGSWRMCVD 697
Query: 2107 SRALNKITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREG 2286
RA+N IT+RY PIPRLDD+LD+L G+ VFSK+DL SGYHQIR++ GDEWKTAFKT+ G
Sbjct: 698 CRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLCSGYHQIRMKLGDEWKTAFKTKFG 757
Query: 2287 LFEWLVMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLS 2466
L+EWLVMPFGL+NAPSTFMR+MN+ LR IG VVVYFDDIL+YS+S+ DH HLRAV
Sbjct: 758 LYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIEDHHGHLRAVFD 817
Query: 2467 ILRTECFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHG 2646
LR + KC F T+ V FLGY V+ GI VD AK+ AI WPVPTT+T+VRSF G
Sbjct: 818 ALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLG 877
Query: 2647 LASFYRRFIPHFSTIMAPITDL-MHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVP 2823
LA FYR F+ FSTI AP+ +L +F+W AF +K KLTHAPLL LPDF+
Sbjct: 878 LAGFYRLFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKT 937
Query: 2824 FELHSDASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFH 3003
FEL DAS +G+G VL Q G P+AYFSEKL+ YSTYD + +A+VR + W+HYL+
Sbjct: 938 FELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKQLFALVRTLETWQHYLWP 997
Query: 3004 REFILYTDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLL 3183
+EF++++DHE+LKHI SQ L+ RHA W F++ F +V+KH+ G N + DALSRR+++L
Sbjct: 998 KEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIVDALSRRYAML 1057
Query: 3184 VDMRIEVPGFDSFRELYATDSFFKIILSSLARGDA-SDFILHDGFLFKGICLCVPMCSLR 3360
+ ++ G ++ +E YA D FK +L + G + F+L +GF+F+ LC+P S+
Sbjct: 1058 SQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVH 1117
Query: 3361 LRLVAELHS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGL 3531
+ L+ E H GH G ++ D++ FWP +RRDV RFVARC CQ +K GL
Sbjct: 1118 MLLLQEAHGGGLMGHFGVKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGL 1177
Query: 3532 YRPLPIPSQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQL 3711
Y PLP+PS PW +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC +S DA HVA L
Sbjct: 1178 YMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADL 1237
Query: 3712 FFREVYRLHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSL 3891
FFRE+ RLHG+P +IVSDRDT+FLSHFWR+LW+ T+L FS+ HPQTDGQTEVVNR++
Sbjct: 1238 FFREIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTV 1297
Query: 3892 GNLLRCLVGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLPS 4065
+LR ++ + W+ L EFA+N + + +T PF++VYG LPRAP+DLL LP+
Sbjct: 1298 STMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPT 1355
>gb|EMJ22494.1| hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
Length = 1364
Score = 993 bits (2567), Expect = 0.0
Identities = 511/1010 (50%), Positives = 674/1010 (66%), Gaps = 13/1010 (1%)
Frame = +1
Query: 1072 CFNCGDPSHLQSACPKRASTRALYVDDVCDADFSS--SPVYDDDISAQPPEEFLHGDVGQ 1245
CF+C H+ S CP+R T + DD CD + VYD +I ++ LH Q
Sbjct: 289 CFHCHAKGHIASRCPQRTLTISASTDDHCDVEIVDPLEGVYDPEIDDCFDDDILH----Q 344
Query: 1246 LLVLQRVCLTPRREDDDSMQRHKLFESTCTVQGKICRFIIDSGSCENVVAADAIQKLNLS 1425
+ V++ C+ DS +R +F + + C+ +IDSGS NV++ A+ +LNL
Sbjct: 345 VSVMR--CIYSALALLDSWKRTSIFHTYVPCNNQTCKLVIDSGSTMNVISKSAVTRLNLK 402
Query: 1426 TEPHPTPYSLAWLQRDNEITVTRRVLLTFSIGGKYTDSVWCDVVPMDACHLLLGRPWQYD 1605
EPHP P+ +AW+ + ++ VT R L++ +G + ++ D++PM+ H+LLGRPW YD
Sbjct: 403 PEPHPHPFHVAWVDK-TKLPVTERCLVSLKLG-TCDEDIYLDLLPMNVAHVLLGRPWLYD 460
Query: 1606 RGVIHDGRQNTYSFLFHGVKVTLLXXXXXXXXTDAHPRVLSISYSAFARAMDASSFVLLL 1785
V + GR+NTY+F G +TL T + I+ S+ ++ + S L L
Sbjct: 461 HCVQNCGRENTYTFQHEGKSITLRPANPAIKPTKTN-----ITTSSPSQTGNVSGHQLAL 515
Query: 1786 VS------RDVSESPNV--PSVVAPLLSEFADIFPDELPPGLPPLRMIQHQIDFIPGAKL 1941
+S +S +P+ P + LL+EF+D+ D+LP LPP+R IQH ID +PG++L
Sbjct: 516 LSYGEFEKEKISAAPSYQQPEPLHQLLNEFSDVMLDDLPNELPPMRDIQHAIDLVPGSQL 575
Query: 1942 PNRPHYRMSPSEHEELRRQIEELLHRGHIRESLSPCAVPALLIPKKDGAWRMCVDSRALN 2121
N PHYRM+ SE EL QI+ LL +G IR SLS CAVP LL PKKDG+WRMCVDSRA+N
Sbjct: 576 LNLPHYRMNSSERAELNTQIQGLLDKGFIRHSLSSCAVPVLLTPKKDGSWRMCVDSRAIN 635
Query: 2122 KITVRYSFPIPRLDDLLDQLGGATVFSKLDLKSGYHQIRIRPGDEWKTAFKTREGLFEWL 2301
KITV+Y FPIPRL+ +L++L G+ FSK+DL+SGYHQIRIR GDEWKTAFKT +GL+EWL
Sbjct: 636 KITVKYRFPIPRLEAMLEELAGSKWFSKIDLRSGYHQIRIREGDEWKTAFKTPDGLYEWL 695
Query: 2302 VMPFGLSNAPSTFMRIMNQTLRPLIGSCVVVYFDDILVYSKSVHDHLAHLRAVLSILRTE 2481
VMPFG+SNAPSTFMR+M LRP IG +VVYFDDIL+YS S DHL HLR + +LR E
Sbjct: 696 VMPFGMSNAPSTFMRVMTHVLRPYIGKFLVVYFDDILIYSHSKEDHLQHLRTIFHMLRQE 755
Query: 2482 CFYAAPSKCVFLTENVLFLGYRVSATGIGVDDAKIAAIQDWPVPTTLTEVRSFHGLASFY 2661
LF+ + D K+ AI +WP+P+TLTE RSFHGLASFY
Sbjct: 756 ---------------KLFVNLK------NADPDKVHAIVNWPLPSTLTETRSFHGLASFY 794
Query: 2662 RRFIPHFSTIMAPITDLMHGKSFSWPTQAATAFTDIKHKLTHAPLLALPDFSVPFELHSD 2841
RRFIP FSTIMAPITD M F W A AF +K K+T AP+L P+ + FE+ D
Sbjct: 795 RRFIPSFSTIMAPITDCMKQGEFRWTHAATRAFEALKQKMTEAPVLRHPELTKVFEVACD 854
Query: 2842 ASKVGIGAVLSQHGHPIAYFSEKLNATRGRYSTYDIEFYAVVRAIRHWRHYLFHREFILY 3021
AS VGIG VLSQ GH +AYF+EKLN + +YSTYD EFYA+VRA+R+W++YL EF+LY
Sbjct: 855 ASGVGIGGVLSQEGHLVAYFNEKLNEAKQKYSTYDKEFYAIVRALRYWQYYLLPNEFVLY 914
Query: 3022 TDHEALKHINSQDSLSARHAAWSAFLQQFTFVVKHQSGITNKVADALSRRHSLLVDMRIE 3201
+DH+AL++++SQ ++S+RH W+ +LQ FTFV++H+ G+ NKVADALSR
Sbjct: 915 SDHQALRYLHSQRNVSSRHIKWTEYLQIFTFVIRHRPGVDNKVADALSRE---------- 964
Query: 3202 VPGFDSFRELYATDSFFKIILSSLARGDASDFILHDGFLFKGICLCVPMCSLRLRLVAEL 3381
+++ R D DF+L DG+LF+G LC+P SLR LV EL
Sbjct: 965 --------------------VTAGNRRDHVDFLLRDGYLFRGTQLCIPRTSLRDFLVWEL 1004
Query: 3382 HS---TGHVGRDRSIDLVRRQYFWPTLRRDVSRFVARCRICQVSKGTSTNAGLYRPLPIP 3552
H+ GH G+D++I LV +++WP+L+RDV+ +A+C CQ++K N GLY PLPIP
Sbjct: 1005 HAGGLAGHFGKDKTITLVADRFYWPSLKRDVAHILAQCCTCQLAKARKQNTGLYTPLPIP 1064
Query: 3553 SQPWGALSMDFVLGLPRTQRGHDSIFVVVDRFSKMVHFIPCKRSADAVHVAQLFFREVYR 3732
PW LSMDFVLGLP+T RGHDSI VVVDRFSKM HF+PC ++ADA +VA+LFF+EV R
Sbjct: 1065 HTPWKDLSMDFVLGLPKTARGHDSILVVVDRFSKMAHFLPCSKAADASYVAKLFFKEVIR 1124
Query: 3733 LHGLPVSIVSDRDTRFLSHFWRSLWSMANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCL 3912
LHGLPVSIVSDRD +F+S+FW++LW + T L FSSA+HPQTDGQTEVVNRSLG+LLRCL
Sbjct: 1125 LHGLPVSIVSDRDVKFVSYFWKTLWKLFGTSLKFSSAFHPQTDGQTEVVNRSLGDLLRCL 1184
Query: 3913 VGDTPRAWDIKLSQAEFAHNLALNRSTGLSPFQVVYGFLPRAPVDLLTLP 4062
VGD WD+ L AEFA+N + NR+TG SPF++VYG +PR P+DL LP
Sbjct: 1185 VGDKQGNWDLILPVAEFAYNNSANRTTGKSPFEIVYGVMPRPPIDLAPLP 1234