BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00009106
         (1566 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   805   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   805   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   805   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   803   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   802   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   800   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   796   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   793   0.0  
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 783   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   645   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   562   e-157
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   555   e-155
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             505   e-140
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   505   e-140
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   474   e-131
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   457   e-126
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   456   e-125
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 455   e-125
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 454   e-125
ref|YP_002341559.1| replication-associated protein [Schlumberger...   446   e-122

>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  805 bits (2080), Expect = 0.0
 Identities = 409/521 (78%), Positives = 432/521 (82%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +    L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQL
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQL 981


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  805 bits (2078), Expect = 0.0
 Identities = 408/521 (78%), Positives = 432/521 (82%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +  + L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQL
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQL 981


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  805 bits (2078), Expect = 0.0
 Identities = 408/521 (78%), Positives = 432/521 (82%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +  + L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCSTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQL
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQL 981


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  803 bits (2074), Expect = 0.0
 Identities = 408/521 (78%), Positives = 431/521 (82%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +    L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQL
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQL 981


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  802 bits (2072), Expect = 0.0
 Identities = 407/521 (78%), Positives = 431/521 (82%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +  + L   QL ALHELGN R G PLLPK  P +  R                  
Sbjct: 463  HQSLSLKCSTLPEHQLWALHELGNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P + ++L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLP
Sbjct: 641  TQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQL
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQL 981


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  800 bits (2065), Expect = 0.0
 Identities = 406/521 (77%), Positives = 431/521 (82%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            H SL +    L   QL ALHELGN R GGPLLPK  P +  R                  
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP 521

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
                  +D +P   DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A
Sbjct: 522  HKTTQSSD-LPHPQDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRA 580

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
                HW  P ++++L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKE
Sbjct: 581  DGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKE 640

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLP 722
            TQ MLT+N   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDW KKLP
Sbjct: 641  TQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLP 700

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHH
Sbjct: 701  HNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHH 760

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+P
Sbjct: 761  ESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRP 820

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 821  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 880

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+                 VE
Sbjct: 881  DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVE 940

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            D TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQL
Sbjct: 941  DGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQL 981


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  796 bits (2056), Expect = 0.0
 Identities = 403/525 (76%), Positives = 430/525 (81%), Gaps = 4/525 (0%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPK----ITPEEQDREXXXXXXXXXXXTK 170
            H SL +    L   QL ALHELGNTR GGPLLPK    +T  E   +            +
Sbjct: 463  HQSLSLKCPTLPEHQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPR 522

Query: 171  ASAALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRD 350
             +        T  +P   DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+
Sbjct: 523  KTT------QTLDLPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRE 576

Query: 351  LPKATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQ 530
            LP+A    HW  P + ++++TLRS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q
Sbjct: 577  LPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQ 636

Query: 531  TWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWL 710
             WKETQTML +N   NLAISVIHGAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWL
Sbjct: 637  VWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWL 696

Query: 711  KKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQ 890
            KKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQ
Sbjct: 697  KKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQ 756

Query: 891  STHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGF 1070
            STHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGF
Sbjct: 757  STHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGF 816

Query: 1071 QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTAL 1250
            QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTAL
Sbjct: 817  QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTAL 876

Query: 1251 SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXX 1430
            SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EF+               
Sbjct: 877  SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTH 936

Query: 1431 XXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
              VED TTTLDDFKE L DKF+REIF   HGHTNCVQ DDPTTQL
Sbjct: 937  FPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQL 981


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  793 bits (2047), Expect = 0.0
 Identities = 397/521 (76%), Positives = 431/521 (82%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            HT LKV  + LS  QL A+H LG++R GGPLLP++T +    E           ++AS A
Sbjct: 466  HTQLKVLCSALSEGQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPA 525

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
             +     D  P   +P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+A
Sbjct: 526  SSNPSGPDAQPTAQNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRA 585

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
            TLP HW    L ++L+TLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKE
Sbjct: 586  TLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKE 645

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLP 722
            TQTMLT+N    LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLP
Sbjct: 646  TQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLP 705

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFV S SP+VIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHH
Sbjct: 706  HNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHH 765

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            E+NEEALISKL PATTI+S  SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP P
Sbjct: 766  ESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLP 825

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSL+KKAAFTDAGHKVS+YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 826  GLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 885

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF                  VE
Sbjct: 886  DSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVE 945

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            +  TTLDDFKE L DKF+REIFT   GHTNCVQ DDPTTQL
Sbjct: 946  EPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQL 986


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  783 bits (2021), Expect = 0.0
 Identities = 398/521 (76%), Positives = 426/521 (81%)
 Frame = +3

Query: 3    HTSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAA 182
            HTSLKV    LS EQL ALHELGN+R GGP+LPK +                  T  S+ 
Sbjct: 468  HTSLKVVPQSLSPEQLSALHELGNSRCGGPMLPKRSSNH---------------THTSSD 512

Query: 183  LNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
            L +  H    P        P  +   K   +GFEALEIQTDPSTG+ IMPITD R+LP+A
Sbjct: 513  LLRRRH----PRQQRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRA 568

Query: 363  TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 542
             +P HW+ P   K++ TLR+LNRFPT W PDRARARAFTSDVKNSRTGKALHRE+QTWKE
Sbjct: 569  IMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKE 628

Query: 543  TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLP 722
            TQTMLTDN   + AISVIHGAGGSGKSQALQTLLRQNP+LPIEVVLPTNELRLDWLKKLP
Sbjct: 629  TQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 688

Query: 723  HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 902
            HNPPEQFRTFERAFV S+ P+VIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHH
Sbjct: 689  HNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHH 748

Query: 903  EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 1082
            EANEEALISKL+PATT FSELSRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQP
Sbjct: 749  EANEEALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQP 808

Query: 1083 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 1262
            GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAV
Sbjct: 809  GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAV 868

Query: 1263 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVE 1442
            DS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKI EFS                 VE
Sbjct: 869  DSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVE 928

Query: 1443 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            + TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQL
Sbjct: 929  ECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQL 969


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  645 bits (1665), Expect = 0.0
 Identities = 335/522 (64%), Positives = 389/522 (74%), Gaps = 10/522 (1%)
 Frame = +3

Query: 30   DLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQ 209
            +LS +QL ALH LG+ R  G  LP  +P +   E           T ++A   +   T  
Sbjct: 447  NLSEDQLEALHVLGSLRTDGESLP--SPPKAPLETGPHPTP----TISAAGPTKTVPTPN 500

Query: 210  VPVNS---------DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 362
            V V++         DP TLPW AWLP L ALGFEA EIQTDP     IMPITD++ LP  
Sbjct: 501  VEVSANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHE 560

Query: 363  TLPEHWNEPG-LSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWK 539
            T  E+ +      KV+ TL+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+Q WK
Sbjct: 561  TFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWK 620

Query: 540  ETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKL 719
            ETQT LT+     L +SVIHGAGGSGKSQALQT+LR +P+LP+EVVLPTNELR DWL+KL
Sbjct: 621  ETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKL 680

Query: 720  PHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTH 899
            PHNPPEQFRTFERAFV S +P+VIFDDYGKLPQG++EAFA+    L+L ILTGDPRQSTH
Sbjct: 681  PHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTH 740

Query: 900  HEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQ 1079
            HE+NE+A+I++L PAT IFS L RYYINATHRN K LANKLGVYSSN  PL V+YGF+P+
Sbjct: 741  HESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPE 800

Query: 1080 PGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRA 1259
            PGLHLLVPSLVKKAAF DAGHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLYTALSRA
Sbjct: 801  PGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRA 860

Query: 1260 VDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXV 1439
            VDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+ EF+                 V
Sbjct: 861  VDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPV 920

Query: 1440 EDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            E+ + TL   ++SL+DK++REI    HG TNCVQ +D T QL
Sbjct: 921  ENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQL 962


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  562 bits (1449), Expect = e-157
 Identities = 282/495 (56%), Positives = 355/495 (71%), Gaps = 4/495 (0%)
 Frame = +3

Query: 90   PLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPV----NSDPATLPWVAWL 257
            P LP ++PE + R               +      ++T+ V      N+  A LPW  W+
Sbjct: 566  PTLP-LSPELEKRHEALKSKAESSEASKTEPRKDENYTEMVNKTLIENAKEAGLPWAVWM 624

Query: 258  PKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFP 437
            PKLNALGFEA E Q  P T  +IMPITD+    K  +P H       ++L  L++L+R P
Sbjct: 625  PKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELLDLLKALSRMP 680

Query: 438  TSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSG 617
            T W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  D+    + +SVIHGAGGSG
Sbjct: 681  TLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPLSVIHGAGGSG 740

Query: 618  KSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFD 797
            KS ALQ LLR +PELPI+V+LPTNELR+DWL KLP N PE FRTFE+A++ + +P +I D
Sbjct: 741  KSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYLQTNAPSIIMD 800

Query: 798  DYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYY 977
            DYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L P+T IFS+ SRYY
Sbjct: 801  DYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPSTQIFSQFSRYY 860

Query: 978  INATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTY 1157
            INATHRN+K LAN LGVYS N+  LK+T+GFQP   +HLLVPSL+KKAAF++AGHK STY
Sbjct: 861  INATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAFSEAGHKTSTY 920

Query: 1158 AGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYL 1337
            AGCQGITA K+QILLD++T MC++EVLYTALSRAVDSIHF+N+   SS FWEKLEATPYL
Sbjct: 921  AGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTSSNFWEKLEATPYL 980

Query: 1338 KTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEA 1517
            KTFLS+VREDKI E+                  VE+  T L++F E L+ K EREIF E+
Sbjct: 981  KTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQKHEREIFNES 1040

Query: 1518 HGHTNCVQGDDPTTQ 1562
            HGHTNCVQ D+   Q
Sbjct: 1041 HGHTNCVQTDNKIIQ 1055


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  555 bits (1430), Expect = e-155
 Identities = 272/312 (87%), Positives = 286/312 (91%)
 Frame = +3

Query: 630  LQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGK 809
            LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGK
Sbjct: 1    LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 810  LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 989
            LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61   LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 990  HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQ 1169
            HRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQ
Sbjct: 121  HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 1170 GITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 1349
            GITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181  GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240

Query: 1350 SLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 1529
            SLVRED++AEFS                 VED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241  SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300

Query: 1530 NCVQGDDPTTQL 1565
            NCVQ D+PTTQL
Sbjct: 301  NCVQTDNPTTQL 312


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  505 bits (1300), Expect = e-140
 Identities = 259/452 (57%), Positives = 312/452 (69%), Gaps = 1/452 (0%)
 Frame = +3

Query: 213  PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 389
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543  PVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 390  GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 569
                V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 570  TANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRT 749
               + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 750  FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 929
            +ERAF    SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 930  KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL 1109
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   LHLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 1110 VKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 1289
            +KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 1290 AQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDF 1469
               S+FWEKLEATPYLK FLS VRE+ IA                    VE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAY 956

Query: 1470 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
             E + +KFEREIFTE  GHTNCVQ  +P  QL
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQL 988


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  505 bits (1300), Expect = e-140
 Identities = 259/452 (57%), Positives = 312/452 (69%), Gaps = 1/452 (0%)
 Frame = +3

Query: 213  PVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEP 389
            PV++    LPW  W P L  LGF+A EIQ  P    VIMPIT+ V  LP + +  H    
Sbjct: 543  PVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH---- 598

Query: 390  GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 569
                V+  L  L+R PT W P   RAR++TSD+KN RTG  L +E+ TWKETQT+  + +
Sbjct: 599  --ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 570  TANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRT 749
               + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 750  FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 929
            +ERAF    SP+V+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 930  KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL 1109
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   LHLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 1110 VKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 1289
            +KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 1290 AQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDF 1469
               S+FWEKLEATPYLK FLS VRE+ IA                    VE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAY 956

Query: 1470 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
             E + +KFEREIFTE  GHTNCVQ  +P  QL
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQL 988


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  474 bits (1219), Expect = e-131
 Identities = 245/443 (55%), Positives = 305/443 (68%)
 Frame = +3

Query: 237  LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 416
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 417  RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 596
              L R PT + P+  RARA+TSDVKN R G  L ++ + W      L +     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 597  HGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 776
            HGAGGSGKSQALQTL++ NPEL I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880

Query: 777  SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 956
            +PIVIFDDYGKLP GY+EAF +  ++++L+ILTGD +QS HHE+NE A  S + P     
Sbjct: 881  TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEA 940

Query: 957  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 1136
            SEL RYYINATHRN K LANKLGVYS  +   +VT+G  P PGLH+LVPSL KK AF++ 
Sbjct: 941  SELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEM 1000

Query: 1137 GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 1316
            GHKVSTYAGCQGITAPK+QILL  +T++C++EVLYTALSRAV SIHFVN++  + AFW+K
Sbjct: 1001 GHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQAFWKK 1060

Query: 1317 LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFE 1496
            LE TPYLK FLS +RE+                        ED     ++  E + +K E
Sbjct: 1061 LECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEPPRTHIAKEDAMVEYENVIEKMPEKHE 1120

Query: 1497 REIFTEAHGHTNCVQGDDPTTQL 1565
            REIF+E HGH+NCVQ +DP  Q+
Sbjct: 1121 REIFSEKHGHSNCVQTEDPFIQM 1143


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  457 bits (1175), Expect = e-126
 Identities = 238/447 (53%), Positives = 298/447 (66%)
 Frame = +3

Query: 225  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 404
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753

Query: 405  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 584
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 585  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 764
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 765  VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 944
            +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 945  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAA 1124
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQA 990

Query: 1125 FTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 1304
            F++ GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN +  + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCSPNNQA 1050

Query: 1305 FWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLS 1484
            FW KLE+TPYLK FLS +RED                       V+      +D  E + 
Sbjct: 1051 FWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDILEQMP 1110

Query: 1485 DKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            +K EREIF+E HGH+NCVQ +D   Q+
Sbjct: 1111 EKHEREIFSEKHGHSNCVQTEDTFVQM 1137


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  456 bits (1172), Expect = e-125
 Identities = 237/447 (53%), Positives = 296/447 (66%)
 Frame = +3

Query: 225  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 404
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 405  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 584
            L    S  R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 585  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 764
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 765  VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 944
            +    P VIFDDYGKLP GYIEAF+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 945  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAA 1124
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQA 990

Query: 1125 FTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 1304
            F++ GHK STYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + A
Sbjct: 991  FSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQA 1050

Query: 1305 FWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLS 1484
            FW KLE+TPYLK FLS +RED                       V+      +D  + + 
Sbjct: 1051 FWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMP 1110

Query: 1485 DKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            +K EREIF+E HGH+NCVQ +D   Q+
Sbjct: 1111 EKHEREIFSEKHGHSNCVQTEDTFVQM 1137


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  455 bits (1171), Expect = e-125
 Identities = 237/447 (53%), Positives = 297/447 (66%)
 Frame = +3

Query: 225  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 404
            +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLPKCS-PEKVN-PSLLKM 753

Query: 405  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 584
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 585  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 764
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 765  VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 944
            +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 945  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAA 1124
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEA 990

Query: 1125 FTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 1304
            F++ GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQA 1050

Query: 1305 FWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLS 1484
            FW KLE+TPYLK FLS +RED                       V+      +D  + + 
Sbjct: 1051 FWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMP 1110

Query: 1485 DKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            +K EREIF+E HGH+NCVQ +D   Q+
Sbjct: 1111 EKHEREIFSERHGHSNCVQTEDTFVQM 1137


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  454 bits (1168), Expect = e-125
 Identities = 236/447 (52%), Positives = 297/447 (66%)
 Frame = +3

Query: 225  DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKV 404
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE   +P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKV-DPSLLKM 753

Query: 405  LTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLA 584
            L       R PT + P   RA+A++SDVKNSR G  L ++ + W      L +N    LA
Sbjct: 754  LDNQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 585  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 764
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 765  VCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 944
            +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 945  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAA 1124
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PGLHLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEA 990

Query: 1125 FTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 1304
            F++ GHKVSTYAGCQG+TAP+VQILL  +T+MC++EV+YTALSRAV SIHFVN    + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQA 1050

Query: 1305 FWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLS 1484
            FW KLE+TPYLK FLS +RED                       V+      +D  + + 
Sbjct: 1051 FWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPPKTHIPVDSAMPIYEDLLDQMR 1110

Query: 1485 DKFEREIFTEAHGHTNCVQGDDPTTQL 1565
            +K EREIF+E HGH+NCVQ +D   Q+
Sbjct: 1111 EKHEREIFSEKHGHSNCVQTEDTFVQM 1137


>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
            gi|217316801|gb|AAR11537.2| replication-associated
            protein [Schlumbergera virus X]
          Length = 1545

 Score =  446 bits (1147), Expect = e-122
 Identities = 240/520 (46%), Positives = 317/520 (60%)
 Frame = +3

Query: 6    TSLKVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAAL 185
            T+L +GHA+L T+++ A  +L  T L G  +   T  +  +             + S   
Sbjct: 648  TTLNIGHAELRTKRI-ADGDLSFTSLTGVCV--YTMPQGFQSTHKHAVTSLEEGRISITF 704

Query: 186  NQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKAT 365
                H      +++ + LPW AWLP LN  GF+  + Q +P+ G +I PI D++ L K  
Sbjct: 705  RTSVH------HAETSVLPWQAWLPILNVAGFKGTQSQVNPNDGSLISPILDIKKLEKTP 758

Query: 366  LPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 545
                 + PG+++VLT +   +R PT + PD  RA+AF SDVKN R G  L  +++ W E 
Sbjct: 759  A----SHPGINEVLTCI---HRLPTPFTPDPLRAKAFGSDVKNLRIGALLKHQSKEWLEA 811

Query: 546  QTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 725
             +  T+     + +SVIHG GGSGKS ALQ  LR NPE  I V+LPTNELRLDW +KLP 
Sbjct: 812  FSRKTEMPPRTIGLSVIHGTGGSGKSHALQDFLRNNPEERITVILPTNELRLDWQRKLPQ 871

Query: 726  NPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 905
              P   +TFE++ +   S +VI DDY KLP G+IEA+  T++ LE +ILTGDP QS HHE
Sbjct: 872  AHPNSLKTFEKSLLVGASSVVIMDDYTKLPAGFIEAYINTNSGLETLILTGDPNQSFHHE 931

Query: 906  ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 1085
             NE AL SK+AP + I    SRYY+NATHRN + LAN L VYS       +T      PG
Sbjct: 932  PNENALTSKIAPFSEIAQSFSRYYLNATHRNKRDLANMLAVYSEVEGTTNITMSSTVLPG 991

Query: 1086 LHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVD 1265
             HLLVPS+ KK A+ + GHKVSTYAGCQGITAP++QIL+DNDT MC+++V+YTALSRAV 
Sbjct: 992  RHLLVPSMYKKQAYGEMGHKVSTYAGCQGITAPEIQILIDNDTPMCSQQVMYTALSRAVH 1051

Query: 1266 SIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVED 1445
            +IHFVN+   + AFWEKL ATPYL  FL LVRE+K  + S                 VE+
Sbjct: 1052 AIHFVNTGVTNDAFWEKLAATPYLAAFLRLVREEKTRQPSPTEDPPAQPPAPETHFPVEN 1111

Query: 1446 KTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQL 1565
                 D   E++ DK  RE+F+E  GH+NCVQ +DP  Q+
Sbjct: 1112 PKNFFDKIIENMPDKHSRELFSEKDGHSNCVQTEDPIVQM 1151