BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00009105
         (1659 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 995   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   984   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   983   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   983   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   983   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   980   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   978   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   974   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   956   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   833   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   829   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   707   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             695   0.0  
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   695   0.0  
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               630   e-178
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   614   e-173
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   608   e-171
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   608   e-171
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 607   e-171
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   605   e-170

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  995 bits (2573), Expect = 0.0
 Identities = 486/552 (88%), Positives = 512/552 (92%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            D R+LP+A +P HW+ P   K++ TLR+LNRFPTPW PDRARARAFTSDVKNSRTGKALH
Sbjct: 561  DTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALH 620

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            RE+QTWKETQTMLT+N   + AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR
Sbjct: 621  RESQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 680

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDWLKKLPHNPPEQFRTFERAFV S+ PVVIFDDYGKLPQGYIEAFAMTHA+LEL+ILTG
Sbjct: 681  LDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTG 740

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            DPRQSTHHEANEEALISKL+PATT FSELSRYYINATHRNSKFLANKLG+YSSN CPLKV
Sbjct: 741  DPRQSTHHEANEEALISKLSPATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKV 800

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            TYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL
Sbjct: 801  TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 860

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSA          
Sbjct: 861  YTALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMP 920

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                 PVE+ TT LDDF+E L DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEAL
Sbjct: 921  PVTHFPVEECTTALDDFREELHDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEAL 980

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LWETIKARLTISTPEAN+EEFRAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEV
Sbjct: 981  LWETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEV 1040

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            QNTYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH
Sbjct: 1041 QNTYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 1100

Query: 37   AVMLYGTMARYM 2
            AVMLYGTMARYM
Sbjct: 1101 AVMLYGTMARYM 1112


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  984 bits (2544), Expect = 0.0
 Identities = 486/552 (88%), Positives = 506/552 (91%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            D R+LP+A    HW  P + ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALH
Sbjct: 573  DTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALH 632

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            RE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELR
Sbjct: 633  RESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELR 692

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTG
Sbjct: 693  LDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTG 752

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            DPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV
Sbjct: 753  DPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 812

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            TYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL
Sbjct: 813  TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 872

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A          
Sbjct: 873  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAP 932

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                 PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEAL
Sbjct: 933  PCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEAL 992

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEV
Sbjct: 993  LWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEV 1052

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            QNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH
Sbjct: 1053 QNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 1112

Query: 37   AVMLYGTMARYM 2
            AVMLYGTMARYM
Sbjct: 1113 AVMLYGTMARYM 1124


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  983 bits (2540), Expect = 0.0
 Identities = 485/552 (87%), Positives = 505/552 (91%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALH
Sbjct: 573  DTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALH 632

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            RE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELR
Sbjct: 633  RESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELR 692

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTG
Sbjct: 693  LDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTG 752

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            DPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV
Sbjct: 753  DPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 812

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            TYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL
Sbjct: 813  TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 872

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A          
Sbjct: 873  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAP 932

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                 PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEAL
Sbjct: 933  PCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEAL 992

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEV
Sbjct: 993  LWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEV 1052

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            QNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH
Sbjct: 1053 QNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 1112

Query: 37   AVMLYGTMARYM 2
            AVMLYGTMARYM
Sbjct: 1113 AVMLYGTMARYM 1124


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  983 bits (2540), Expect = 0.0
 Identities = 485/552 (87%), Positives = 505/552 (91%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALH
Sbjct: 573  DTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALH 632

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            RE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELR
Sbjct: 633  RESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELR 692

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTG
Sbjct: 693  LDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTG 752

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            DPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV
Sbjct: 753  DPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 812

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            TYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL
Sbjct: 813  TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 872

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A          
Sbjct: 873  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAP 932

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                 PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEAL
Sbjct: 933  PCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEAL 992

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEV
Sbjct: 993  LWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEV 1052

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            QNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH
Sbjct: 1053 QNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 1112

Query: 37   AVMLYGTMARYM 2
            AVMLYGTMARYM
Sbjct: 1113 AVMLYGTMARYM 1124


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  983 bits (2540), Expect = 0.0
 Identities = 485/552 (87%), Positives = 505/552 (91%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            D R+LP+A    HW  P + ++L+TLR LNR+PTPW PDRARA+AFTSDVKNSRTGKALH
Sbjct: 573  DTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALH 632

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            RE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELR
Sbjct: 633  RESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELR 692

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTG
Sbjct: 693  LDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTG 752

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            DPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV
Sbjct: 753  DPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 812

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            TYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL
Sbjct: 813  TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 872

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A          
Sbjct: 873  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAP 932

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                 PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEAL
Sbjct: 933  PCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEAL 992

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEV
Sbjct: 993  LWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEV 1052

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            QNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH
Sbjct: 1053 QNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 1112

Query: 37   AVMLYGTMARYM 2
            AVMLYGTMARYM
Sbjct: 1113 AVMLYGTMARYM 1124


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  980 bits (2533), Expect = 0.0
 Identities = 484/552 (87%), Positives = 504/552 (91%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            D R+LP+A    HW  P + ++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALH
Sbjct: 573  DTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALH 632

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            RE+Q WKETQTMLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELR
Sbjct: 633  RESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELR 692

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTG
Sbjct: 693  LDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTG 752

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            DPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLKV
Sbjct: 753  DPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKV 812

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            TYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL
Sbjct: 813  TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 872

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A          
Sbjct: 873  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAP 932

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                 PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEAL
Sbjct: 933  PCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEAL 992

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEV
Sbjct: 993  LWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEV 1052

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            QNTYLKKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH
Sbjct: 1053 QNTYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 1112

Query: 37   AVMLYGTMARYM 2
            AVMLYGTMARYM
Sbjct: 1113 AVMLYGTMARYM 1124


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  978 bits (2529), Expect = 0.0
 Identities = 483/552 (87%), Positives = 505/552 (91%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            D R+LP+A    HW  P ++++L+TLRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALH
Sbjct: 573  DTRELPRADGHAHWQGPDMARILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALH 632

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            RE+Q WKETQ MLTEN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELR
Sbjct: 633  RESQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELR 692

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDW KKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFAMTHASLELVILTG
Sbjct: 693  LDWPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTG 752

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            DPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV
Sbjct: 753  DPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 812

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            TYGFQP+PG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL
Sbjct: 813  TYGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 872

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A          
Sbjct: 873  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAP 932

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                 PVED TTTLDDFKE L DKF+REIF  AHGHTNCVQ DDPTTQLFSHQQAKDEAL
Sbjct: 933  PCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEAL 992

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEV
Sbjct: 993  LWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEV 1052

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            QNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH
Sbjct: 1053 QNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 1112

Query: 37   AVMLYGTMARYM 2
            AVMLYGTMARYM
Sbjct: 1113 AVMLYGTMARYM 1124


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  974 bits (2517), Expect = 0.0
 Identities = 479/552 (86%), Positives = 502/552 (90%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            D R+LP+A    HW  P + ++++TLRS NR+PTPW PDR+RA+AFTSDVKNSRTGKALH
Sbjct: 573  DTRELPRAEGHAHWQGPDMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALH 632

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            RE+Q WKETQTML EN   NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELR
Sbjct: 633  RESQVWKETQTMLAENSQTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELR 692

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGKLPQGY+EAFA+THASLELVILTG
Sbjct: 693  LDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTG 752

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            DPRQSTHHE+NEEALISKL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKV
Sbjct: 753  DPRQSTHHESNEEALISKLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKV 812

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            TYGFQPQPG+HLLVPSL+KKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL
Sbjct: 813  TYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 872

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEF+A          
Sbjct: 873  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAP 932

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                 PVED TTTLDDFKE L DKF+REIF   HGHTNCVQ DDPTTQLFSHQQAKDEAL
Sbjct: 933  PCTHFPVEDGTTTLDDFKEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEAL 992

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LWETI ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEV
Sbjct: 993  LWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEV 1052

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            QNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH
Sbjct: 1053 QNTYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 1112

Query: 37   AVMLYGTMARYM 2
            AVMLYGTMARYM
Sbjct: 1113 AVMLYGTMARYM 1124


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  956 bits (2470), Expect = 0.0
 Identities = 470/552 (85%), Positives = 499/552 (90%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            D ++LP+ATLP HW    L ++L+TLRSLNRFPTPW PDR RARAFTSDVKNSRTGKALH
Sbjct: 578  DTQELPRATLPAHWQGHNLERILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALH 637

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            RE+QTWKETQTMLTEN    LAISVIHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELR
Sbjct: 638  RESQTWKETQTMLTENTQTELAISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELR 697

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDWLKKLPHNPPEQFRTFERAFV S SPVVIFDDYGKLPQGY+EAFA+THA+LELVILTG
Sbjct: 698  LDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTG 757

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            DPRQSTHHE+NEEALISKL PATTI+S  SRYYINAT RNSKFLANKLGVYS+NSCPL V
Sbjct: 758  DPRQSTHHESNEEALISKLPPATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNV 817

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            TYGFQP PG+HLLVPSLMKKAAFTDAGHKVS+YAGCQGITAP+VQILLDNDTTMCTKEVL
Sbjct: 818  TYGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVL 877

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTFLSLVREDKI EF A          
Sbjct: 878  YTALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTP 937

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                 PVE+  TTLDDFKE L DKF+REIFT   GHTNCVQ DDPTTQLFSHQQAKDEAL
Sbjct: 938  PVTHFPVEEPATTLDDFKEELRDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEAL 997

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LWE I+ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEV
Sbjct: 998  LWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEV 1057

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            QNTYLKK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQH
Sbjct: 1058 QNTYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQH 1117

Query: 37   AVMLYGTMARYM 2
            AVMLYGTMARYM
Sbjct: 1118 AVMLYGTMARYM 1129


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  833 bits (2151), Expect = 0.0
 Identities = 412/553 (74%), Positives = 464/553 (83%), Gaps = 1/553 (0%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPG-LSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKAL 1481
            D++ LP  T  E+ +      KV+ TL+ LNR PTPW PDR RARA+ SD+KNSRTGKAL
Sbjct: 553  DIQTLPHETFDEYDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKAL 612

Query: 1480 HRETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNEL 1301
            H+E+Q WKETQT LTE     L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNEL
Sbjct: 613  HKESQNWKETQTRLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNEL 672

Query: 1300 RLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILT 1121
            R DWL+KLPHNPPEQFRTFERAFV S +PVVIFDDYGKLPQG++EAFA+    L+L ILT
Sbjct: 673  RXDWLRKLPHNPPEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILT 732

Query: 1120 GDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLK 941
            GDPRQSTHHE+NE+A+I++L PAT IFS L RYYINATHRN K LANKLGVYSSN  PL 
Sbjct: 733  GDPRQSTHHESNEQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLH 792

Query: 940  VTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEV 761
            V+YGF+P+PG+HLLVPSL+KKAAF DAGHKVSTYAGCQGITAP+VQILLD+DTTMC+ EV
Sbjct: 793  VSYGFRPEPGLHLLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEV 852

Query: 760  LYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXX 581
            LYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+EEF+A         
Sbjct: 853  LYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVA 912

Query: 580  XXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEA 401
                  PVE+ + TL   ++SL+DK++REI    HG TNCVQ +D T QLFSHQQAKDEA
Sbjct: 913  PPVTHFPVENASHTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEA 972

Query: 400  LLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEE 221
            LLWETI ARL +STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA E
Sbjct: 973  LLWETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAE 1032

Query: 220  VQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQ 41
            VQ TYL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ
Sbjct: 1033 VQQTYLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQ 1092

Query: 40   HAVMLYGTMARYM 2
             AVMLYGTMARYM
Sbjct: 1093 AAVMLYGTMARYM 1105


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  829 bits (2141), Expect = 0.0
 Identities = 407/455 (89%), Positives = 425/455 (93%)
 Frame = -3

Query: 1366 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 1187
            LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1    LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 1186 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 1007
            LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61   LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 1006 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 827
            HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121  HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 826  GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 647
            GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181  GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240

Query: 646  SLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 467
            SLVRED++ EFSA               PVED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241  SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300

Query: 466  NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 287
            NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301  NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360

Query: 286  AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 107
            AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361  AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420

Query: 106  KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 2
            KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM
Sbjct: 421  KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 455


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  707 bits (1824), Expect = 0.0
 Identities = 350/546 (64%), Positives = 424/546 (77%)
 Frame = -3

Query: 1639 KATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTW 1460
            K  +P H       ++L  L++L+R PT W PD  RA++FTSD+KN RTGK L +E+Q+W
Sbjct: 654  KTGIPVHRETKAPQELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSW 713

Query: 1459 KETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKK 1280
            KE QT+  ++    + +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL K
Sbjct: 714  KEAQTLKVDHNIRPVPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSK 773

Query: 1279 LPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQST 1100
            LP N PE FRTFE+A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS 
Sbjct: 774  LPRNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSV 833

Query: 1099 HHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP 920
            HHE NE+A+I++L P+T IFS+ SRYYINATHRN+K LAN LGVYS N+  LK+T+GFQP
Sbjct: 834  HHETNEQAMIAQLEPSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQP 893

Query: 919  QPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSR 740
               +HLLVPSL+KKAAF++AGHK STYAGCQGITA ++QILLD++T MC++EVLYTALSR
Sbjct: 894  IKDIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSR 953

Query: 739  AVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXP 560
            AVDSIHF+N+   SS FWEKLEATPYLKTFLS+VREDKI E+                 P
Sbjct: 954  AVDSIHFINTAPTSSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFP 1013

Query: 559  VEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIK 380
            VE+  T L++F E L+ K EREIF E+HGHTNCVQ D+   Q  SHQQAKDEALLWETIK
Sbjct: 1014 VENGNTILEEFTEELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIK 1073

Query: 379  ARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLK 200
            ARL IS  + N  EF  KKD+GDILW NY +AM LP++   F E+LW   A E+Q+TYL 
Sbjct: 1074 ARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLS 1132

Query: 199  KSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYG 20
            KS   +K GERRQSPDF E  ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYG
Sbjct: 1133 KSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYG 1192

Query: 19   TMARYM 2
            TMARYM
Sbjct: 1193 TMARYM 1198


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  695 bits (1793), Expect = 0.0
 Identities = 348/535 (65%), Positives = 403/535 (75%)
 Frame = -3

Query: 1606 GLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 1427
            G   V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKETQT+  E +
Sbjct: 597  GHELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 1426 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 1247
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 1246 FERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 1067
            +ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 1066 KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSL 887
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   +HLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 886  MKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 707
            +KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 706  AQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDF 527
               S+FWEKLEATPYLK FLS VRE+ I                    PVE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAY 956

Query: 526  KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 347
             E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016

Query: 346  LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 167
             EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GER
Sbjct: 1017 WEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076

Query: 166  RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 2
            RQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYM
Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYM 1131


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  695 bits (1793), Expect = 0.0
 Identities = 348/535 (65%), Positives = 403/535 (75%)
 Frame = -3

Query: 1606 GLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENV 1427
            G   V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKETQT+  E +
Sbjct: 597  GHELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERL 656

Query: 1426 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 1247
               + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P   PE+ +T
Sbjct: 657  EKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKT 716

Query: 1246 FERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 1067
            +ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE NE+A+IS
Sbjct: 717  YERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMIS 776

Query: 1066 KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSL 887
            +LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   +HLLVPSL
Sbjct: 777  QLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSL 836

Query: 886  MKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 707
            +KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV SIHF+N+ 
Sbjct: 837  LKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTG 896

Query: 706  AQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVEDKTTTLDDF 527
               S+FWEKLEATPYLK FLS VRE+ I                    PVE+ +  L  +
Sbjct: 897  PTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAY 956

Query: 526  KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 347
             E + +KFEREIFTE  GHTNCVQ  +P  QLF HQQAKDEALLWETIKARLTIS+PEAN
Sbjct: 957  MEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEAN 1016

Query: 346  LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 167
             EEF  KKD+GDILW +Y KAM LP+E   FSEDLW   A EVQNTYL K ++ +K GER
Sbjct: 1017 WEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGER 1076

Query: 166  RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYM 2
            RQSPDF +HQIL+FLKSQWVKKMEKLG  KIK GQTIASFQQHAVMLYGTMARYM
Sbjct: 1077 RQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYM 1131


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  630 bits (1625), Expect = e-178
 Identities = 317/555 (57%), Positives = 398/555 (71%), Gaps = 3/555 (0%)
 Frame = -3

Query: 1657 DVRDLPK--ATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKA 1484
            D + LPK    LPE         +L  L+  +R+P P+  D  + RAF SDVKN+RTG  
Sbjct: 873  DNKSLPKYEGRLPE-------PHLLEQLKEASRYPCPYRIDHKQGRAFASDVKNNRTGSL 925

Query: 1483 LHRETQTWKETQTMLTENVTAN-LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTN 1307
              ++   WKE  T + E+     +A++VIHGAGGSGKSQ LQ  L +NP+  I  +LPTN
Sbjct: 926  TTKQPDEWKEAFTRMAESPEQRTVALTVIHGAGGSGKSQLLQRYLMENPECKINTILPTN 985

Query: 1306 ELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVI 1127
            ELR DWL KLP  P    +TFERA +  + PVVIFDDY KLP GYI+AF   H ++E  I
Sbjct: 986  ELRNDWLTKLPKMPLTAIQTFERALISPQKPVVIFDDYSKLPAGYIDAFLSLHKNVEWAI 1045

Query: 1126 LTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCP 947
            LTGDPRQST HE+NE+A+I+ L+ +T  FS+ SRYYINATHRN + LA  LGVYS  +  
Sbjct: 1046 LTGDPRQSTFHESNEQAMINHLSKSTEHFSQFSRYYINATHRNKQDLARFLGVYSEKTGL 1105

Query: 946  LKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTK 767
              ++   +P+P  HLLVPSL+KK ++T+ G+K STYAGCQGITA RVQ+LLD DTT+C+ 
Sbjct: 1106 TSISMSSRPEPDWHLLVPSLIKKRSYTEMGYKTSTYAGCQGITADRVQVLLDTDTTLCSD 1165

Query: 766  EVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXX 587
            +VLYTALSRAV ++HF+N++A SSAFW+KL +TPYLKTFLS +RED++ E          
Sbjct: 1166 QVLYTALSRAVHAVHFINTSATSSAFWDKLNSTPYLKTFLSTLREDRLREEGPKPETPEE 1225

Query: 586  XXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKD 407
                    PVE++  +L+D  E L +K ERE+++  HG++NCVQ DDP  QLFSHQQAKD
Sbjct: 1226 PKPATTHFPVENENLSLEDKVEELLEKHERELYSSDHGYSNCVQTDDPVVQLFSHQQAKD 1285

Query: 406  EALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCA 227
            + LLW TI+ARL IS P+AN+EEFR KK++GD+LW NY +AMKLP +  EFS +LW  CA
Sbjct: 1286 QTLLWATIEARLKISNPKANMEEFRMKKNVGDVLWLNYKRAMKLPDKPIEFSHELWHACA 1345

Query: 226  EEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASF 47
            EEVQ TYL K ++ IK GE RQSPDF +H I +FLKSQWVKK+EKLGA KIKPGQTIASF
Sbjct: 1346 EEVQKTYLSKPLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEKLGAPKIKPGQTIASF 1405

Query: 46   QQHAVMLYGTMARYM 2
            QQ  VMLYGTMARYM
Sbjct: 1406 QQATVMLYGTMARYM 1420


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  614 bits (1584), Expect = e-173
 Identities = 314/552 (56%), Positives = 389/552 (70%)
 Frame = -3

Query: 1657 DVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALH 1478
            ++R +PK   PE   E     V  TL  L R PTP+ P+  RARA+TSDVKN R G  L 
Sbjct: 740  EIRSMPKCK-PEGVPEV----VYKTLDGLARAPTPYSPNPIRARAYTSDVKNCRIGALLR 794

Query: 1477 RETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELR 1298
            ++ + W      L E     LAISVIHGAGGSGKSQALQTL++ NP+L I VVLPTNELR
Sbjct: 795  QQGKEWGCRFDALVEAGKRELAISVIHGAGGSGKSQALQTLIKDNPELDITVVLPTNELR 854

Query: 1297 LDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTG 1118
            LDWL+KLP  P E+F+TFE+A +   +P+VIFDDYGKLP GY+EAF +  ++++L+ILTG
Sbjct: 855  LDWLRKLPKAPQEKFKTFEKALLAPPTPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTG 914

Query: 1117 DPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKV 938
            D +QS HHE+NE A  S + P     SEL RYYINATHRN K LANKLGVYS  +   +V
Sbjct: 915  DCKQSVHHESNENATTSSIEPLVKEASELCRYYINATHRNKKDLANKLGVYSEKTGLTEV 974

Query: 937  TYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVL 758
            T+G  P PG+H+LVPSL KK AF++ GHKVSTYAGCQGITAP++QILL  +T++C++EVL
Sbjct: 975  THGTTPIPGLHMLVPSLYKKQAFSEMGHKVSTYAGCQGITAPKIQILLTEETSLCSREVL 1034

Query: 757  YTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXX 578
            YTALSRAV SIHFVN++  + AFW+KLE TPYLK FLS +RE+  +              
Sbjct: 1035 YTALSRAVHSIHFVNASPNNQAFWKKLECTPYLKAFLSTLREEVAQPIEEKKAEPTPVEP 1094

Query: 577  XXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEAL 398
                   ED     ++  E + +K EREIF+E HGH+NCVQ +DP  Q+FSHQQAKD+ L
Sbjct: 1095 PRTHIAKEDAMVEYENVIEKMPEKHEREIFSEKHGHSNCVQTEDPFIQMFSHQQAKDDTL 1154

Query: 397  LWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEV 218
            LW TI+ARL IS P+AN +E+  K+ +G++L+ +Y +AM LPK    F EDLW     EV
Sbjct: 1155 LWATIEARLVISNPKANWQEYLEKRPVGEVLFESYKRAMHLPKMPIPFEEDLWNSSMHEV 1214

Query: 217  QNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQH 38
            Q TYL K  + IK G  RQSPD+  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q 
Sbjct: 1215 QKTYLSKPENMIKNGMARQSPDYDPNVISLFLKSQWVKKMEKLGAIKIKPGQTIASFHQA 1274

Query: 37   AVMLYGTMARYM 2
             VML+GTMARYM
Sbjct: 1275 TVMLFGTMARYM 1286


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  608 bits (1568), Expect = e-171
 Identities = 313/551 (56%), Positives = 380/551 (68%)
 Frame = -3

Query: 1654 VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHR 1475
            ++ LPK + PE  N P L K+L    S  R PTP+ P   RA+A++SDVKNSR G  L +
Sbjct: 735  IKSLPKCS-PEKVN-PSLLKMLN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQ 789

Query: 1474 ETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRL 1295
            + + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRL
Sbjct: 790  QGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRL 849

Query: 1294 DWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 1115
            DWLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIEAF+   +S EL++LTGD
Sbjct: 850  DWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGD 909

Query: 1114 PRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVT 935
             +QS HHE+NE A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T
Sbjct: 910  SKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSIT 969

Query: 934  YGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 755
             G  P PG+HLLVPSL KK AF++ GHK STYAGCQG+TAPRVQILL  +T+MC++EV+Y
Sbjct: 970  QGNHPVPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIY 1029

Query: 754  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXX 575
            TALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED                  
Sbjct: 1030 TALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPP 1089

Query: 574  XXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 395
                PV+      +D  + + +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LL
Sbjct: 1090 KTHIPVDSAMPIYEDLLDQMPEKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLL 1149

Query: 394  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 215
            W TI+ARL IS P+AN +EF  KK +GD+L+  Y +AM LP E   F   LW  C  E+Q
Sbjct: 1150 WATIEARLVISNPKANWQEFMEKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEIQ 1209

Query: 214  NTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHA 35
             TYL K I+ +K G+ RQSPD+  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  
Sbjct: 1210 RTYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQAT 1269

Query: 34   VMLYGTMARYM 2
            VML+GTMARYM
Sbjct: 1270 VMLFGTMARYM 1280


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  608 bits (1568), Expect = e-171
 Identities = 314/551 (56%), Positives = 381/551 (69%)
 Frame = -3

Query: 1654 VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHR 1475
            V+ LPK + PE  N P L K+L       R PTP+ P   RA+A++SDVKNSR G  L +
Sbjct: 735  VKSLPKCS-PEKVN-PSLLKMLDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQ 789

Query: 1474 ETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRL 1295
            + + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRL
Sbjct: 790  QGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRL 849

Query: 1294 DWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 1115
            DWLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD
Sbjct: 850  DWLKKLPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGD 909

Query: 1114 PRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVT 935
             +QS HHE+NE A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T
Sbjct: 910  SKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSIT 969

Query: 934  YGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 755
             G  P PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TAPRVQILL  +T+MC++EV+Y
Sbjct: 970  QGNHPVPGLHLLVPSLYKKQAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIY 1029

Query: 754  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXX 575
            TALSRAV SIHFVN +  + AFW KLE+TPYLK FLS +RED                  
Sbjct: 1030 TALSRAVHSIHFVNCSPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPP 1089

Query: 574  XXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 395
                PV+      +D  E + +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LL
Sbjct: 1090 KTHIPVDSAMPIYEDILEQMPEKHEREIFSEKHGHSNCVQTEDTFVQMFSHQQAKDETLL 1149

Query: 394  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 215
            W TI+ARL +S P+AN +EF  KK +GD+L+  Y +AM LP E   F   LW  C  EVQ
Sbjct: 1150 WATIEARLVLSNPKANWQEFMEKKPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQ 1209

Query: 214  NTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHA 35
             TYL K I+ +K G+ RQSPD+  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  
Sbjct: 1210 RTYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQAT 1269

Query: 34   VMLYGTMARYM 2
            VML+GTMARYM
Sbjct: 1270 VMLFGTMARYM 1280


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  607 bits (1565), Expect = e-171
 Identities = 313/551 (56%), Positives = 381/551 (69%)
 Frame = -3

Query: 1654 VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHR 1475
            ++ LPK + PE  N P L K+L       R PTP+ P   RA+A++SDVKNSR G  L +
Sbjct: 735  IKSLPKCS-PEKVN-PSLLKMLNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQ 789

Query: 1474 ETQTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRL 1295
            + + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRL
Sbjct: 790  QGKDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRL 849

Query: 1294 DWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 1115
            DWLKKLP  P +Q +TFE+A +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD
Sbjct: 850  DWLKKLPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGD 909

Query: 1114 PRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVT 935
             +QS HHE+NE A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T
Sbjct: 910  SKQSVHHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSIT 969

Query: 934  YGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLY 755
             G  P PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TAPRVQILL  +T+MC++EV+Y
Sbjct: 970  QGNHPVPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIY 1029

Query: 754  TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXX 575
            TALSRAV SIHFVN    + AFW KLE+TPYLK FLS +RED                  
Sbjct: 1030 TALSRAVHSIHFVNCGPNNQAFWAKLESTPYLKAFLSTLREDAAPVVKPKEEAPAPVDPP 1089

Query: 574  XXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 395
                PV+      +D  + + +K EREIF+E HGH+NCVQ +D   Q+FSHQQAKDE LL
Sbjct: 1090 KTHIPVDSAMPIYEDLLDQMPEKHEREIFSERHGHSNCVQTEDTFVQMFSHQQAKDETLL 1149

Query: 394  WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 215
            W TI+ARL IS P+AN +EF  K+ +GD+L+  Y +AM LP E   F   LW  C  EVQ
Sbjct: 1150 WATIEARLVISNPKANWQEFMEKRPIGDVLFGFYREAMGLPTEPIAFEPQLWESCIHEVQ 1209

Query: 214  NTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHA 35
             TYL K I+ +K G+ RQSPD+  + I +FLKSQWVKKMEKLGA KIKPGQTIASF Q  
Sbjct: 1210 RTYLAKPINMLKNGQARQSPDYDPNMISLFLKSQWVKKMEKLGALKIKPGQTIASFHQAT 1269

Query: 34   VMLYGTMARYM 2
            VML+GTMARYM
Sbjct: 1270 VMLFGTMARYM 1280


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  605 bits (1560), Expect = e-170
 Identities = 307/543 (56%), Positives = 382/543 (70%)
 Frame = -3

Query: 1630 LPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 1451
            LPE  +    + +LTT+   +R P  +  + +RA+A+ SDV+NSRTG  L  +   WKE 
Sbjct: 913  LPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENSRTGLLLRSQPDHWKEA 969

Query: 1450 QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPH 1271
             TM  E     +A+SVIHGAGGSGKS ALQ L+R+NP+L   VV PTNELRLDWL KLP 
Sbjct: 970  LTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRLDWLAKLPK 1029

Query: 1270 NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 1091
                + +TFE+A   S +  +IF DY KLP GYIE +     +  L ILTGDPRQS++HE
Sbjct: 1030 VELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTATLAILTGDPRQSSYHE 1089

Query: 1090 ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 911
            +NE A+IS+LAP+T+ F +  RYYINATHRN + LA  LGVYS  +    ++   +P   
Sbjct: 1090 SNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSERTGLTSISMSSRPLTD 1149

Query: 910  MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 731
             HLLVPS++KK  + + G+K STYAGCQGITAPR+QILLD DTT+C  EVLYTALSRAV 
Sbjct: 1150 THLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLYTALSRAVH 1209

Query: 730  SIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIEEFSAXXXXXXXXXXXXXXXPVED 551
             IHF+N+ A S AFW+KL ATPYLKTFL   RE++++E                  PVE+
Sbjct: 1210 GIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGPTTHFPVEN 1269

Query: 550  KTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARL 371
            +   L++  E L +K +REI    HGHTNCVQ +D   QLFSHQQAKD+ALLW TI+ARL
Sbjct: 1270 EKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALLWATIEARL 1329

Query: 370  TISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSI 191
             IS P+AN+ EF AKK++GD+L+ +YH+AMKLP +   F EDLW  CA+EVQ TYL K I
Sbjct: 1330 KISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQGTYLSKPI 1389

Query: 190  SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMA 11
            + +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMA
Sbjct: 1390 NMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMA 1449

Query: 10   RYM 2
            RYM
Sbjct: 1450 RYM 1452