BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00008028
         (2414 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-...   635   e-179
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-...   631   e-178
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-...   629   e-177
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   626   e-176
emb|CBI40014.3| unnamed protein product [Vitis vinifera]              625   e-176
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]     624   e-176
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   624   e-176
gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]        623   e-175
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-...   598   e-168
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-...   592   e-166
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   587   e-165
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-...   582   e-163
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich...   576   e-161
ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutr...   562   e-157
ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Popu...   550   e-154
ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Caps...   550   e-153
ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-...   549   e-153
gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus pe...   548   e-153
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab...   544   e-152
emb|CAD20831.2| sigma factor [Spinacia oleracea]                      540   e-151

>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
            lycopersicum]
          Length = 613

 Score =  635 bits (1637), Expect = e-179
 Identities = 355/615 (57%), Positives = 407/615 (66%), Gaps = 4/615 (0%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXMLE 474
            MS LLPQF   PD F +  K+Q    +  SK+R SI+ RTQCI              +L 
Sbjct: 1    MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDSIHLRTQCILSTTSAVTSTATSTVLG 60

Query: 475  FEELKLSPLEAIPNSVPADRXXXXXXXXXXXXM-LDLEKLPSLDAHPISIAENKPLAYVG 651
             E+L+L  +E + NSV A+R              +   KLPS +A+P S+A ++P  Y G
Sbjct: 61   IEKLQLPSIEILSNSVAAERSWKSPSAATTTVPGIQKLKLPSFEANPDSVAPDRPWTYTG 120

Query: 652  AFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKSTKP 831
            A GPP+E    AN   E  L S                           M+V ++     
Sbjct: 121  AVGPPAE----ANTKPEDSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLKDS 176

Query: 832  DSTTTGILPEVDTSMVEKSQLAHLAERV---VVREPKVAEIGLGEINPASDPLAESDDVE 1002
            D+   G L E  T+  E   LA   E     V  E   +E+     +   D L +SDD+E
Sbjct: 177  DNVGRGTLSEARTAPFESVHLAQPGETRGVGVCAELNGSEMKWTGSSLFRDTLTDSDDLE 236

Query: 1003 PSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXXQD 1182
            PS EELE L++QL+  IAV+S RQT               N+                QD
Sbjct: 237  PSHEELEILQSQLSNVIAVKSNRQTERKARRAKAVERAAANVVSVKSGSTSRKKRASVQD 296

Query: 1183 VDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQWAA 1362
            VDY+DP                 EEQ LS GIQ LLKLERLQ ELTERCGG PTF+QWAA
Sbjct: 297  VDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWAA 356

Query: 1363 AAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 1542
            AAGVD  TLRK++NYGILCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRGA
Sbjct: 357  AAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRGA 416

Query: 1543 EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 1722
            EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL +ENGR
Sbjct: 417  EKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLTENGR 476

Query: 1723 LPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDLLI 1902
             P+D EVAEATGLSMKRL+AVMLTPKAPRSLDQK+G N+ LKPS+V+ADP+AETSE++L 
Sbjct: 477  HPNDAEVAEATGLSMKRLAAVMLTPKAPRSLDQKVGFNESLKPSEVLADPDAETSEEILT 536

Query: 1903 KQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 2082
            KQFM+QDL KVLD+LNPREKQVV+WRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR
Sbjct: 537  KQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 596

Query: 2083 KLKNKKRTKHLQQYV 2127
            KLKNKKRTK LQQY+
Sbjct: 597  KLKNKKRTKFLQQYI 611


>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
          Length = 613

 Score =  631 bits (1627), Expect = e-178
 Identities = 356/616 (57%), Positives = 409/616 (66%), Gaps = 5/616 (0%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXMLE 474
            MS LLPQF   PD F +  K+Q    +  SK+R  I+ RTQCI              +L 
Sbjct: 1    MSYLLPQFLSLPDAFVICAKTQQQTTIQLSKSRDHIHLRTQCILSTTSAVTSTATSTVLG 60

Query: 475  FEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKL--PSLDAHPISIAENKPLAYV 648
             E+L+L  +E + NSV A+R            + D++KL  PS +A+P S+A ++P  Y 
Sbjct: 61   IEKLQLPSIEILSNSVAAERSWKSPSAATTT-VPDIQKLKLPSFEANPDSVAPDRPWTYT 119

Query: 649  GAFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKSTK 828
            GA GPP+E    AN   E  L S                           M+V ++    
Sbjct: 120  GAVGPPAE----ANTKPENSLASEEAIVAAAAAEAVALAKAALKGAQDAVMLVGYNNLND 175

Query: 829  PDSTTTGILPEVDTSMVEKSQLAHLAE--RV-VVREPKVAEIGLGEINPASDPLAESDDV 999
             D+   G L E  T+  E   LA   E  RV V  E   +E+     +   + L +SDD+
Sbjct: 176  SDNVGRGTLSEARTAPFESVHLAQPGETRRVGVCAELNGSEMKWTGSSLFRETLTDSDDL 235

Query: 1000 EPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXXQ 1179
            EPS EELE L++QL+  IAV+S RQT               N+                Q
Sbjct: 236  EPSPEELEILQSQLSNVIAVKSNRQTERKAKRAKSVEKAAANVVTVKSGSTSRKKRASVQ 295

Query: 1180 DVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQWA 1359
            DVDY+DP                 EEQ LS GIQ LLKLERLQ ELTERCGG PTF+QWA
Sbjct: 296  DVDYSDPLRYLRGTTCSSRLLTASEEQELSRGIQDLLKLERLQVELTERCGGQPTFTQWA 355

Query: 1360 AAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 1539
            AAAGVD  TLRK++NYGILCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLVRG
Sbjct: 356  AAAGVDQMTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVRG 415

Query: 1540 AEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 1719
            AEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQL +ENG
Sbjct: 416  AEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLLTENG 475

Query: 1720 RLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDLL 1899
            R P+D EVAEA GLSMKRL+AVMLTPKAPRSLDQKIG N+ LKPS+V+ADPEAETSE++L
Sbjct: 476  RHPNDAEVAEAAGLSMKRLAAVMLTPKAPRSLDQKIGFNESLKPSEVLADPEAETSEEIL 535

Query: 1900 IKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF 2079
             KQFM+QDL KVLD+LNPREKQVV+WRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF
Sbjct: 536  TKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF 595

Query: 2080 RKLKNKKRTKHLQQYV 2127
            RKLKNKKRTK LQQY+
Sbjct: 596  RKLKNKKRTKFLQQYI 611


>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 578

 Score =  629 bits (1623), Expect = e-177
 Identities = 343/612 (56%), Positives = 402/612 (65%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXMLE 474
            MSCLLPQFKC PDTF+ + K   H    S KNR +I FR QC               +L+
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKL--HILCKSPKNREAIYFRVQCALSTTSPPLSTSTTAVLD 58

Query: 475  FEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKLPSLDAHPISIAENKPLAYVGA 654
             E+L+L                                 PSL++H  S+A ++P  Y+G 
Sbjct: 59   IEKLRL---------------------------------PSLESHSNSVAAHRPWTYIGV 85

Query: 655  FGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKSTKPD 834
             GPP+E N  A   +ETLLTS                            +V  + S K +
Sbjct: 86   VGPPTEANFEATLARETLLTSEEAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSE 145

Query: 835  STTTGILPEVDTSMVEKSQLAHLAERVVVREPKVAEIGLGEINPASDPLAESDDVEPSAE 1014
            +     L   DTS   + Q        ++ +   AE G+ + N   D   +SDD+EP+ E
Sbjct: 146  TKPASFLSGDDTSQFRRIQFTETERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLE 205

Query: 1015 ELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXXQDVDYN 1194
            ELE LEA+ +KSI VRS RQ                 +                Q+VDY+
Sbjct: 206  ELELLEAEFSKSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYS 265

Query: 1195 DPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQWAAAAGV 1374
            DP                 EE  LSEGIQ LLKLE+LQE+L ER G  PTF+QWAAAAGV
Sbjct: 266  DPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGV 325

Query: 1375 DLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 1554
            D +TLR++ NYGI CKDKMIKSNIRLVISIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFD
Sbjct: 326  DQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFD 385

Query: 1555 ATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRLPDD 1734
            A+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR P++
Sbjct: 386  ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 445

Query: 1735 EEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDLLIKQFM 1914
            EEVAEATGLSMKRL+AV+LTPKAPRSLDQKIGINQ+LKPS+VIADP+AET+E+LLIKQFM
Sbjct: 446  EEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFM 505

Query: 1915 KQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 2094
            ++DL KVL+SLNPREKQV++WR+GLEDGR KTLQEIGELMGVSRERIRQIESCAFRKLKN
Sbjct: 506  REDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKN 565

Query: 2095 KKRTKHLQQYVM 2130
            K+RTKHLQQY++
Sbjct: 566  KRRTKHLQQYLV 577


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  626 bits (1615), Expect = e-176
 Identities = 348/615 (56%), Positives = 405/615 (65%), Gaps = 3/615 (0%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKS---QSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXX 465
            MSCLLPQFKC PDTF+++F++     H   + SK++  I FRT C+              
Sbjct: 24   MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83

Query: 466  MLEFEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKLPSLDAHPISIAENKPLAY 645
            +L+ E+L+L                                 PSL+AH  ++A N+   Y
Sbjct: 84   VLDVEKLRL---------------------------------PSLEAHSNAVAANRQWTY 110

Query: 646  VGAFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKST 825
             GA GP +E NLG +   ETL TS                           +MV+HH S 
Sbjct: 111  FGAVGPSTEENLGTSLATETL-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSA 169

Query: 826  KPDSTTTGILPEVDTSMVEKSQLAHLAERVVVREPKVAEIGLGEINPASDPLAESDDVEP 1005
            KP S    I    DT+    +QL       ++ +  + E    E      PL +S D+EP
Sbjct: 170  KPKSKPA-ISLSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEP 228

Query: 1006 SAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXXQDV 1185
            + EEL+ LE Q+++SIAVRS+RQT               N+                Q+V
Sbjct: 229  THEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV 288

Query: 1186 DYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQWAAA 1365
            DY+DP                 EE  LS GIQ LLKLE L+E L+ERCGG PTF+QWAAA
Sbjct: 289  DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348

Query: 1366 AGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 1545
            AGVD R LR+++NYGILCKDKMI SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE
Sbjct: 349  AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408

Query: 1546 KFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRL 1725
            KFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 
Sbjct: 409  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 468

Query: 1726 PDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDLLIK 1905
            P++EEVAEATGLSMKRL AV+LTPKAPRSLDQK GINQ+LKPS+VIADPEAET+EDLLIK
Sbjct: 469  PNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIK 528

Query: 1906 QFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRK 2085
            +FMK+DL KVLD+LNPRE+QVV+WRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFRK
Sbjct: 529  KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 588

Query: 2086 LKNKKRTKHLQQYVM 2130
            LKNKKRTKHL QY +
Sbjct: 589  LKNKKRTKHLMQYAI 603


>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
          Length = 575

 Score =  625 bits (1611), Expect = e-176
 Identities = 342/612 (55%), Positives = 401/612 (65%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXMLE 474
            MSCLLPQFKC PDTF+ + K         SKNR +I FR QC               +L+
Sbjct: 1    MSCLLPQFKCPPDTFSTHPKLHI-----LSKNREAIYFRVQCALSTTSPPLSTSTTAVLD 55

Query: 475  FEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKLPSLDAHPISIAENKPLAYVGA 654
             E+L+L                                 PSL++H  S+A ++P  Y+G 
Sbjct: 56   IEKLRL---------------------------------PSLESHSNSVAAHRPWTYIGV 82

Query: 655  FGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKSTKPD 834
             GPP+E N  A   +ETLLTS                            +V  + S K +
Sbjct: 83   VGPPTEANFEATLARETLLTSEEAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSE 142

Query: 835  STTTGILPEVDTSMVEKSQLAHLAERVVVREPKVAEIGLGEINPASDPLAESDDVEPSAE 1014
            +     L   DTS   + Q        ++ +   AE G+ + N   D   +SDD+EP+ E
Sbjct: 143  TKPASFLSGDDTSQFRRIQFTETERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLE 202

Query: 1015 ELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXXQDVDYN 1194
            ELE LEA+ +KSI VRS RQ                 +                Q+VDY+
Sbjct: 203  ELELLEAEFSKSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYS 262

Query: 1195 DPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQWAAAAGV 1374
            DP                 EE  LSEGIQ LLKLE+LQE+L ER G  PTF+QWAAAAGV
Sbjct: 263  DPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGV 322

Query: 1375 DLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 1554
            D +TLR++ NYGI CKDKMIKSNIRLVISIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFD
Sbjct: 323  DQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFD 382

Query: 1555 ATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRLPDD 1734
            A+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR P++
Sbjct: 383  ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNN 442

Query: 1735 EEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDLLIKQFM 1914
            EEVAEATGLSMKRL+AV+LTPKAPRSLDQKIGINQ+LKPS+VIADP+AET+E+LLIKQFM
Sbjct: 443  EEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFM 502

Query: 1915 KQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 2094
            ++DL KVL+SLNPREKQV++WR+GLEDGR KTLQEIGELMGVSRERIRQIESCAFRKLKN
Sbjct: 503  REDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKN 562

Query: 2095 KKRTKHLQQYVM 2130
            K+RTKHLQQY++
Sbjct: 563  KRRTKHLQQYLV 574


>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  624 bits (1610), Expect = e-176
 Identities = 347/615 (56%), Positives = 405/615 (65%), Gaps = 3/615 (0%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKSQSHAFVNSSKNRVS---INFRTQCIXXXXXXXXXXXXXX 465
            MSCLLPQF C PDTF+  F  ++H+    + +      IN   QC+              
Sbjct: 1    MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARDINSLAQCVLSTTSPSTSVGATY 60

Query: 466  MLEFEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKLPSLDAHPISIAENKPLAY 645
            +L  E+L+                                  PSLDA+  S+  N+P  Y
Sbjct: 61   VLSVEKLRF---------------------------------PSLDANSESVTSNRPWTY 87

Query: 646  VGAFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKST 825
             GA GPP E N  A    ETLLTS                           ++V    ST
Sbjct: 88   TGATGPPVEANFEATLATETLLTSEEAVIAAAAAEAVTLAKAAVKVAKDAALLV--RPST 145

Query: 826  KPDSTTTGILPEVDTSMVEKSQLAHLAERVVVREPKVAEIGLGEINPASDPLAESDDVEP 1005
            + +S +      + +S     + A  A RV  R+   AE+ L E +P  D   ES+D++P
Sbjct: 146  RAESIS------LVSSEARNIKTAQAASRV--RDSLRAEMALIEDHPPKDAAKESNDLQP 197

Query: 1006 SAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXXQDV 1185
            + EEL  L+ QL+KSIAVRS+RQ+               N+                QDV
Sbjct: 198  TNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEKAAANVVAVKSGSNSRKKRASVQDV 257

Query: 1186 DYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQWAAA 1365
            D++DP                 EE  LSEGIQ LLKLE+LQEEL ERCGGPPTF+QWAAA
Sbjct: 258  DHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLEKLQEELAERCGGPPTFAQWAAA 317

Query: 1366 AGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 1545
            AGVD +TLR++INYGILCKDKMIKSN+RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE
Sbjct: 318  AGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 377

Query: 1546 KFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRL 1725
            KFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 
Sbjct: 378  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQ 437

Query: 1726 PDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDLLIK 1905
            P+DEEVAEATGLSMKRL+AV+LTPKAPRSL+QKIGINQ+LKPS++IADP+AET ED+L +
Sbjct: 438  PNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEIIADPDAETLEDVLTR 497

Query: 1906 QFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRK 2085
            QFMKQDL KVLDSLN REKQV++WRFG++DGRMKTLQEIGELMGVSRERIRQIESCAFRK
Sbjct: 498  QFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIGELMGVSRERIRQIESCAFRK 557

Query: 2086 LKNKKRTKHLQQYVM 2130
            LKNKKRTKHLQQY++
Sbjct: 558  LKNKKRTKHLQQYLI 572


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  624 bits (1609), Expect = e-176
 Identities = 347/615 (56%), Positives = 404/615 (65%), Gaps = 3/615 (0%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKS---QSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXX 465
            MSCLLPQFKC PDTF+++F++     H   + SK++  I FRT C+              
Sbjct: 24   MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83

Query: 466  MLEFEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKLPSLDAHPISIAENKPLAY 645
            +L+ E+L+L                                 PSL+AH  ++A N+   Y
Sbjct: 84   VLDVEKLRL---------------------------------PSLEAHSNAVAANRQWTY 110

Query: 646  VGAFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKST 825
             GA GP +E NLG +   ETL TS                           +MV+HH S 
Sbjct: 111  FGAVGPSTEENLGTSLATETL-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSA 169

Query: 826  KPDSTTTGILPEVDTSMVEKSQLAHLAERVVVREPKVAEIGLGEINPASDPLAESDDVEP 1005
            KP S    I    DTS    +QL       ++ +  + E    E      PL +S D+EP
Sbjct: 170  KPKSKPA-ISLSADTSTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEP 228

Query: 1006 SAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXXQDV 1185
            + EEL+ LE Q+++SIAVRS+RQT               N+                Q+V
Sbjct: 229  THEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEV 288

Query: 1186 DYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQWAAA 1365
            DY+DP                 EE  LS GIQ LLKLE L+E L+ERCGG PTF+QWAAA
Sbjct: 289  DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348

Query: 1366 AGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 1545
            AGVD R LR+++NYGILCKDKMI SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE
Sbjct: 349  AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408

Query: 1546 KFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRL 1725
            KFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 
Sbjct: 409  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH 468

Query: 1726 PDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDLLIK 1905
            P++EEVA+ATGLSMKRL AV+L PKAPRSLDQK GINQ+LKPS+VIADPEAET+EDLLIK
Sbjct: 469  PNNEEVAKATGLSMKRLHAVLLAPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLIK 528

Query: 1906 QFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRK 2085
            +FMK+DL KVLD+LNPRE+QVV+WRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFRK
Sbjct: 529  KFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 588

Query: 2086 LKNKKRTKHLQQYVM 2130
            LKNKKRTKHL QY +
Sbjct: 589  LKNKKRTKHLMQYAI 603


>gb|EOY10370.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
          Length = 623

 Score =  623 bits (1606), Expect = e-175
 Identities = 352/627 (56%), Positives = 416/627 (66%), Gaps = 15/627 (2%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKSQ-SHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXML 471
            MSCLLPQFKC PDTF++ F++  SH F+ +    V      QC                +
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 472  EFEELK---LSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKL--PSLDAHPISIAENKP 636
               + K       + + ++  +              +LD+EKL  PS +AHP S+A ++P
Sbjct: 61   VLAKHKEHICFRTQCVLSTTSSSTSTTATA------VLDVEKLRLPSFEAHPNSVAVDRP 114

Query: 637  LAYVGAFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHH 816
              Y+GA GPPSE +LGA    + LLTS                           +M  ++
Sbjct: 115  WTYIGATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENY 174

Query: 817  KSTKPDSTTTGILPEVDTSMVEKSQLAHLAERV-VVREPKVAEIGLGEINPASDPLAESD 993
               K +  + G+    D S   K  L   AER  ++ +    E  + E +   +   ESD
Sbjct: 175  NYAKTEMKS-GVSFATD-SFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESD 232

Query: 994  DVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXX 1173
            ++EP+ EELE LE QL++SIAVRS+RQT               N+               
Sbjct: 233  ELEPTNEELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGA 292

Query: 1174 XQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQ 1353
             QDVDY+DP                 EE  LSEGIQ LLKLERLQEEL ERCGG PTF+Q
Sbjct: 293  LQDVDYSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQ 352

Query: 1354 WAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 1533
            WAAAAGVD +TLR ++NYG+ CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV
Sbjct: 353  WAAAAGVDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 412

Query: 1534 RGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 1713
            RGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE
Sbjct: 413  RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 472

Query: 1714 NGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPS--------DVIAD 1869
            NGR PD+EEVAEATGLSMKRL+AV+LTPKAPRSLDQKIGINQ+LKPS        +VIAD
Sbjct: 473  NGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIAD 532

Query: 1870 PEAETSEDLLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRE 2049
            PEAET+ED+LIKQFM++DL KVLDSL+ RE+QV++WRFG+EDGRMKTLQEIGELMGVSRE
Sbjct: 533  PEAETAEDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRE 592

Query: 2050 RIRQIESCAFRKLKNKKRTKHLQQYVM 2130
            RIRQIESCAFRKLKNKKRTKHLQQY++
Sbjct: 593  RIRQIESCAFRKLKNKKRTKHLQQYLL 619


>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
            sinensis]
          Length = 525

 Score =  598 bits (1542), Expect = e-168
 Identities = 326/522 (62%), Positives = 372/522 (71%), Gaps = 2/522 (0%)
 Frame = +1

Query: 571  MLDLEKL--PSLDAHPISIAENKPLAYVGAFGPPSEVNLGANFDKETLLTSXXXXXXXXX 744
            +LD+EKL  PSL+AH  ++A N+   Y GA GP +E NLG +   ETL TS         
Sbjct: 4    VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 62

Query: 745  XXXXXXXXXXXXXXXXXXMMVSHHKSTKPDSTTTGILPEVDTSMVEKSQLAHLAERVVVR 924
                              +MV+HH S KP S    I    DT+    +QL       ++ 
Sbjct: 63   AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISLSADTNTSMWAQLTERERASIIG 121

Query: 925  EPKVAEIGLGEINPASDPLAESDDVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXX 1104
            +  + E    E      PL +S D+EP+ EEL+ LE Q+++SIAVRS+RQT         
Sbjct: 122  DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 181

Query: 1105 XXXXXXNIXXXXXXXXXXXXXXXXQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQV 1284
                  N+                Q+VDY+DP                 EE  LS GIQ 
Sbjct: 182  AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241

Query: 1285 LLKLERLQEELTERCGGPPTFSQWAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISI 1464
            LLKLE L+E L+ERCGG PTF+QWAAAAGVD R LR+++NYGILCKDKMI SNIRLVISI
Sbjct: 242  LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301

Query: 1465 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTI 1644
            AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 302  AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361

Query: 1645 RLPFHMVEATYRVKEARKQLYSENGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQK 1824
            RLPFHMVEATYRVKEARKQLYSENGR P++EEVAEATGLSMKRL AV+LTPKAPRSLDQK
Sbjct: 362  RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQK 421

Query: 1825 IGINQDLKPSDVIADPEAETSEDLLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRM 2004
             GINQ+LKPS+VIADPEAET+EDLLIK+FMK+DL KVLD+LNPRE+QVV+WRFGLEDGRM
Sbjct: 422  FGINQNLKPSEVIADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRM 481

Query: 2005 KTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 2130
            KTLQEIGELMGVSRERIRQIES AFRKLKNKKRTKHL QY +
Sbjct: 482  KTLQEIGELMGVSRERIRQIESSAFRKLKNKKRTKHLMQYAI 523


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
            subsp. vesca]
          Length = 616

 Score =  592 bits (1527), Expect = e-166
 Identities = 321/524 (61%), Positives = 374/524 (71%), Gaps = 4/524 (0%)
 Frame = +1

Query: 571  MLDLEK--LPSLDAHPISIAENKPLAYVGAFGPPSEVNLGANFDKETLLTSXXXXXXXXX 744
            +LD+E+  LPSL  +  S+  N+P  Y GA GPP+E N GA    ETLLTS         
Sbjct: 95   LLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSEEAVIAAAA 154

Query: 745  XXXXXXXXXXXXXXXXXXMMVSHHKSTKPDSTTTGILPEVDTSMVEKSQLAHLAERVVVR 924
                              ++VS++   K ++++        TS    +   HL     +R
Sbjct: 155  AEAVTLAKAALKVAKDVALLVSNNHYAKVENSSP---VSCGTSAFHINWAQHLETEPTLR 211

Query: 925  --EPKVAEIGLGEINPASDPLAESDDVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXX 1098
              +   +E  L E +     + ES++VEP+ EE E L+ QL+  IA RS RQT       
Sbjct: 212  IGDSMASETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTERKARRT 271

Query: 1099 XXXXXXXXNIXXXXXXXXXXXXXXXXQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGI 1278
                    +I                QDVD++DP                 EE  LSEGI
Sbjct: 272  RAAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGI 331

Query: 1279 QVLLKLERLQEELTERCGGPPTFSQWAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVI 1458
            Q LLKLE+LQE+L +RCG  PTF+QWAAAAGVD +TLRK++NYGI+CKDKMIKSNIRLVI
Sbjct: 332  QELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSNIRLVI 391

Query: 1459 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 1638
            SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 392  SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 451

Query: 1639 TIRLPFHMVEATYRVKEARKQLYSENGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLD 1818
            TIRLPFHMVEATYRV+EA+KQLYS NGR P+DEEVAEATGLSMKRL+AV+LTPKAPRSL+
Sbjct: 452  TIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLE 511

Query: 1819 QKIGINQDLKPSDVIADPEAETSEDLLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDG 1998
            QKIGINQ+LKPSDVIADP+AET+EDLL+K+FMKQDL KVLDSLNPREKQV++WRFG+EDG
Sbjct: 512  QKIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRFGMEDG 571

Query: 1999 RMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 2130
            RMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYV+
Sbjct: 572  RMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVL 615


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  587 bits (1513), Expect = e-165
 Identities = 340/620 (54%), Positives = 396/620 (63%), Gaps = 8/620 (1%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKSQSHAFVN---SSKNRVSINFRTQCIXXXXXXXXXXXXXX 465
            MSCLLPQFKC PDTF+++F++    F N   S+K+R  I +R QCI              
Sbjct: 2    MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTS--------- 52

Query: 466  MLEFEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKL--PSLDAHPISIAENKPL 639
                           P++  A              +LDLEKL  PS +A   SIA N P 
Sbjct: 53   ---------------PSTSTA--------------VLDLEKLRLPSFEAPSDSIAPNSPW 83

Query: 640  AYVGAFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHK 819
             Y            G+    ETL+TS                           ++V +  
Sbjct: 84   TYA---------TFGSTLATETLITSDEAVIAAAAAEAVALARAAVKVAKDAALLVKNFP 134

Query: 820  STKPDSTTTGILPEVDTSMVEKSQLAHLAERV---VVREPKVAEIGLGEINPASDPLAES 990
            S + +S  T        S ++ S+     E     ++ +    E G  E +     + ES
Sbjct: 135  SAETESKLTS------PSTIDASRWPQFTETERARIIGDSVATETGPREESSMQSSIKES 188

Query: 991  DDVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXX 1170
            D +E + +ELE L+ QL++ IAVRS+RQT               ++              
Sbjct: 189  DYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRG 248

Query: 1171 XXQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFS 1350
              Q+VDY+DP                 EE  LS  IQ LLKLERLQEEL ER GG PTF+
Sbjct: 249  SLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFA 308

Query: 1351 QWAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 1530
            QWAAAAGVD RTLRK+IN+G +CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL
Sbjct: 309  QWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 368

Query: 1531 VRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 1710
            VRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS
Sbjct: 369  VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 428

Query: 1711 ENGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSE 1890
            ENGR PDDEEVAEA GLSMKRLSAV+LTPKAPRSLDQKIG+N DLKPS+VIADPEAET+E
Sbjct: 429  ENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAE 488

Query: 1891 DLLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 2070
            +LL+KQFMKQDL KVL++LNPRE QVV+WRFGLEDGRMKTLQEIGE+MGVSRERIRQIES
Sbjct: 489  ELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIES 548

Query: 2071 CAFRKLKNKKRTKHLQQYVM 2130
             AFRKLKNKKRTK L+QY++
Sbjct: 549  SAFRKLKNKKRTKQLKQYLL 568


>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
            gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
            polymerase sigma factor sigB-like [Cucumis sativus]
          Length = 580

 Score =  582 bits (1499), Expect = e-163
 Identities = 338/626 (53%), Positives = 403/626 (64%), Gaps = 14/626 (2%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFK-----SQSHAFVNSS-----KNRVSINFRTQCIXXXXXXX 444
            MSCLLPQFKC P+TF++ FK     S  H+F+ ++     K R   + RTQCI       
Sbjct: 1    MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAA--- 57

Query: 445  XXXXXXXMLEFEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKLPSLDAHPISIA 624
                            SP  +   +   D              +D  KLP  D +  S++
Sbjct: 58   ----------------SPPTSTGTATTLD--------------VDRLKLPPFDTNTDSVS 87

Query: 625  ENKPLAYVGAFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMM 804
              +  +Y+GA     E +L +     TLLTS                           ++
Sbjct: 88   VERLRSYLGAV----ESSLAS-----TLLTSEEASIAAAAAEAVTLAKAAVKVARDAALL 138

Query: 805  VSHHKSTKPDSTTTGILPEVDTSMVEKSQLAHLAERVVVREPKVAEIGLGEINPASDPL- 981
             ++  S++   T +   P+ D    + +Q        ++ EP    +G+ +     D L 
Sbjct: 139  ANNINSSRA-GTKSQSSPKPDALHFKWAQFMESERADIIGEP----VGVNKRPMEGDALE 193

Query: 982  ---AESDDVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXX 1152
                ESDD+EP++EELE L+ +L++SI V+SKRQT               ++        
Sbjct: 194  PSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVLSFKSGSS 253

Query: 1153 XXXXXXXXQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCG 1332
                    Q+VDY+DP                 EE  LSEGIQ LLKLERLQEEL ER G
Sbjct: 254  SRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLKLERLQEELGERYG 313

Query: 1333 GPPTFSQWAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 1512
              PTF+QWAAAAGV+ RTLRK++NYG LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ
Sbjct: 314  NEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 373

Query: 1513 EGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 1692
            EGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEA
Sbjct: 374  EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEA 433

Query: 1693 RKQLYSENGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADP 1872
            RKQL  ENGR PDD+E+AEA GLSMKRL+AV++TPKAPRSL+QKIGINQ+LKPS+VI+DP
Sbjct: 434  RKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP 493

Query: 1873 EAETSEDLLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRER 2052
            EAET ED+LIKQFMKQDL KVLDSLNPREKQV++WRFG+EDGRMKTLQEIGE+MGVSRER
Sbjct: 494  EAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRER 553

Query: 2053 IRQIESCAFRKLKNKKRTKHLQQYVM 2130
            IRQIESCAFRKLKNKKRTKHLQQYVM
Sbjct: 554  IRQIESCAFRKLKNKKRTKHLQQYVM 579


>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
            gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
            [Populus trichocarpa]
          Length = 567

 Score =  576 bits (1485), Expect = e-161
 Identities = 332/619 (53%), Positives = 391/619 (63%), Gaps = 7/619 (1%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNFKSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXMLE 474
            MSCLLPQFKC PDTF+V+F++  H   N ++         QC+                 
Sbjct: 1    MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQ-------LPQCVLS--------------- 38

Query: 475  FEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKL--PSLDAHPISIAENKPLAYV 648
                  SP  A+                     LDLEKL  PSL+ H  SI+ N+P  Y+
Sbjct: 39   ----SASPSTAV---------------------LDLEKLRLPSLEPHSDSISANRPWTYI 73

Query: 649  GAFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHH---- 816
            G  GP  +   G +   ETL+ +                            M  ++    
Sbjct: 74   GGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAVALARAAVKVAKDAAEMAKNYSFMK 133

Query: 817  KSTK-PDSTTTGILPEVDTSMVEKSQLAHLAERVVVREPKVAEIGLGEINPASDPLAESD 993
            K TK P ++TT     + + + EK +   + + V       AE  L E      P  E D
Sbjct: 134  KETKIPIASTTDSFSSMWSLLTEKERADIIGDSVS------AETRLREEYSVQYPTEEYD 187

Query: 994  DVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXX 1173
             +EP+ EEL  L+ QL++ IAVRSKRQT               N+               
Sbjct: 188  CLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEKAAANVVSVKSGSTSKKKRVP 247

Query: 1174 XQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQ 1353
             Q+VD +DP                 EE  LSEGIQ LLKLER++EEL ER GG P+F+Q
Sbjct: 248  LQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQ 307

Query: 1354 WAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 1533
            WAAAAGVD  TLRK++NYGILCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCRGLV
Sbjct: 308  WAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLV 367

Query: 1534 RGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 1713
            RGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSD+SRTIRLPFHMV+ATYRVKEARKQLYSE
Sbjct: 368  RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFHMVDATYRVKEARKQLYSE 427

Query: 1714 NGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSED 1893
            NGR PDD+EVAEA GLSMKRLSAV+LTPKAPRSLDQK+G N DLK S+V ADPEAET+ED
Sbjct: 428  NGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAED 487

Query: 1894 LLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESC 2073
            LL+K+FMK+DLAKVL SL+PRE QVV+WRFG+EDGRMKTLQEIGELMGVSRER+RQIE  
Sbjct: 488  LLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELS 547

Query: 2074 AFRKLKNKKRTKHLQQYVM 2130
            AFRKLKNK RTK L+QY++
Sbjct: 548  AFRKLKNKNRTKQLRQYMV 566


>ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum]
            gi|557095448|gb|ESQ36030.1| hypothetical protein
            EUTSA_v10007187mg [Eutrema salsugineum]
          Length = 579

 Score =  562 bits (1448), Expect = e-157
 Identities = 332/619 (53%), Positives = 387/619 (62%), Gaps = 8/619 (1%)
 Frame = +1

Query: 298  SCLLPQFKCSPDTFAVNFKSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXMLEF 477
            SCLLPQFKC PD+F+++FK+   ++  S  N+ S+ F+ QC                   
Sbjct: 3    SCLLPQFKCQPDSFSIHFKT---SYSLSKHNKGSVFFQPQC------------------- 40

Query: 478  EELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKL--PSLDAHPISIAENKPLAYVG 651
                     A+  S P               MLD+ KL  PS D    S   ++   Y G
Sbjct: 41   ---------AVSTSPPL-----------LTSMLDVAKLRLPSFDTDSDSRISDRQWTYTG 80

Query: 652  AFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKSTKP 831
              GP +E         ETLLTS                              + + +   
Sbjct: 81   TVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVALARAAVKVAKDATSFRNSYNTKVV 140

Query: 832  DSTTTGILPEVDTSMVEKSQ---LAHLA--ERVVVREPKVAEIGLGEINPASDPLAESD- 993
             S+      + D    EK +   L HLA  +  VV +   A        PA D   ES  
Sbjct: 141  VSSAADKRSKWD-QFTEKERAGILGHLAVSDTGVVSDKSTAPAPAPAPAPAPDCNNESSG 199

Query: 994  DVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXX 1173
            D++   +E+E LE QL+ S AVRS RQT               ++               
Sbjct: 200  DLKSEKQEVELLEEQLSVSSAVRSTRQTERKARRAKGLEKTASSMQSVKTGSSSRKKRAP 259

Query: 1174 XQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQ 1353
             Q+VD+NDP                 EEQ LSEGIQ LLKLERLQ ELTERCG  PTF+Q
Sbjct: 260  SQEVDHNDPLRYLRMTTSSSKLLTAREEQELSEGIQDLLKLERLQAELTERCGHQPTFAQ 319

Query: 1354 WAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 1533
            WA+AAGVD ++LRK+INYG  CKD+MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV
Sbjct: 320  WASAAGVDQKSLRKRINYGTQCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 379

Query: 1534 RGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSE 1713
            RGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE
Sbjct: 380  RGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSE 439

Query: 1714 NGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSED 1893
             G+ P++EEVAEATGLSMKRL AV+L+PK PRSLDQKIGINQ+LKPS+VIADPEAETSED
Sbjct: 440  TGKQPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGINQNLKPSEVIADPEAETSED 499

Query: 1894 LLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESC 2073
            +LIKQFM+QDL KVLDSL+ REKQV++WRFG+EDGRMKTLQEIGE MGVSRER+RQIES 
Sbjct: 500  ILIKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGVSRERVRQIESS 559

Query: 2074 AFRKLKNKKRTKHLQQYVM 2130
            AFRKLKNKKR+ HLQQY++
Sbjct: 560  AFRKLKNKKRSNHLQQYLV 578


>ref|XP_002325455.2| hypothetical protein POPTR_0019s06100g [Populus trichocarpa]
            gi|550316911|gb|EEE99836.2| hypothetical protein
            POPTR_0019s06100g [Populus trichocarpa]
          Length = 555

 Score =  550 bits (1418), Expect = e-154
 Identities = 306/522 (58%), Positives = 352/522 (67%), Gaps = 2/522 (0%)
 Frame = +1

Query: 571  MLDLEKL--PSLDAHPISIAENKPLAYVGAFGPPSEVNLGANFDKETLLTSXXXXXXXXX 744
            +L+LEKL  PSL++H  SIA N+P  Y+G  GPP E   G +   ETL+ +         
Sbjct: 34   VLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAA 93

Query: 745  XXXXXXXXXXXXXXXXXXMMVSHHKSTKPDSTTTGILPEVDTSMVEKSQLAHLAERVVVR 924
                               M  ++ S   + T   I    D+       L       ++ 
Sbjct: 94   AEAVALARAAVKVAKDAAEMAKNYCSVNTE-TKIPIASTADSFSSMWCLLTGKERADIIG 152

Query: 925  EPKVAEIGLGEINPASDPLAESDDVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXX 1104
                AE GL E      P  ESD   P+ EEL  LE QL++SI VRSKRQT         
Sbjct: 153  VSFSAETGLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARA 212

Query: 1105 XXXXXXNIXXXXXXXXXXXXXXXXQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQV 1284
                  N                 Q+VD +DP                 EE  LSEGIQ 
Sbjct: 213  AEKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQD 272

Query: 1285 LLKLERLQEELTERCGGPPTFSQWAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISI 1464
            LLKLER++EEL ER GG PTF+QWAAAA VD  TLRK++NY ILCKDKMIKSNIRLVISI
Sbjct: 273  LLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISI 332

Query: 1465 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTI 1644
            AKNYQGAGMNLQDLVQEGCRGLVRG EKFDA+KGFKFSTYAHWWI+QAVR+SLSDQSRTI
Sbjct: 333  AKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTI 392

Query: 1645 RLPFHMVEATYRVKEARKQLYSENGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQK 1824
            RLPFHMV+ATYRVKEARKQ YSENGR PDD+EVAEATGLSMKRLSAV+LTPKAPRSLDQK
Sbjct: 393  RLPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRSLDQK 452

Query: 1825 IGINQDLKPSDVIADPEAETSEDLLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRM 2004
            +G N DLK S+V ADPEAET+EDLL+K+FMK+DL +VL+SL+PRE QV++WRFG+EDGRM
Sbjct: 453  MGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGMEDGRM 512

Query: 2005 KTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 2130
            KTLQEIGELMGVSRERIRQIE  AFRKLKNK RTK L+QY++
Sbjct: 513  KTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLV 554


>ref|XP_006307126.1| hypothetical protein CARUB_v10008711mg [Capsella rubella]
            gi|482575837|gb|EOA40024.1| hypothetical protein
            CARUB_v10008711mg [Capsella rubella]
          Length = 571

 Score =  550 bits (1416), Expect = e-153
 Identities = 327/618 (52%), Positives = 386/618 (62%), Gaps = 7/618 (1%)
 Frame = +1

Query: 298  SCLLPQFKCSPDTFAVNFKSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXMLEF 477
            SCLLPQFKC PD+F+++F++   +F  S +N+  + F+ QC                   
Sbjct: 3    SCLLPQFKCQPDSFSIHFRT---SFSVSKQNKGPVFFQPQCA------------------ 41

Query: 478  EELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKL--PSLDAHPISIAENKPLAYVG 651
              +  SP  A+  S                  LD+ KL  PS D    S   ++   Y G
Sbjct: 42   --VTTSP--ALLTST-----------------LDVAKLRLPSFDTDSDSRISDRQWTYTG 80

Query: 652  AFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKSTKP 831
              GP +E         ETLLTS                           +  + + +   
Sbjct: 81   TVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVALARAAVKVAKDATLFKNSNNTNLL 140

Query: 832  DSTTTGILPEVDTSMVEKSQ---LAHLA--ERVVVREPKVAEIGLGEINPASDPLAESDD 996
             S+T     + D    EK +   L HLA  +  +V +   A        PAS+  + +D 
Sbjct: 141  ISSTADKRSKWD-QFTEKERAGILGHLAVSDTGIVSDKSTA--------PASNKESSADL 191

Query: 997  VEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXX 1176
            +    +E+E +E Q   S+AVRS RQT                I                
Sbjct: 192  IS-EIQEVELVEEQPAASLAVRSTRQTERKARRAKGLEKSASAIPSVKTGSSPRKKRVVA 250

Query: 1177 QDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQW 1356
            Q+VD+NDP                 EE  LS GIQ LLKLERLQ ELTERCG  PTFSQW
Sbjct: 251  QEVDHNDPLRYLRVTTSSSKLLTVREEHELSAGIQDLLKLERLQAELTERCGRQPTFSQW 310

Query: 1357 AAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 1536
            A+AAGVD ++LRK+INYG  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR
Sbjct: 311  ASAAGVDQKSLRKRINYGTQCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 370

Query: 1537 GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 1716
            GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLY+E 
Sbjct: 371  GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYTEK 430

Query: 1717 GRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDL 1896
            GR P++EEVAEATGLSMKRL AV+L+PK PRSLDQKIG+NQ+LKPS+VIADPEAETSED+
Sbjct: 431  GRHPENEEVAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAETSEDI 490

Query: 1897 LIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 2076
            LIKQFM++DL KVLDSL  REKQV++WRFG+EDGRMKTLQEIGELMGVSRER+RQIES A
Sbjct: 491  LIKQFMREDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERVRQIESSA 550

Query: 2077 FRKLKNKKRTKHLQQYVM 2130
            FRKLKNKKR+ HLQQY++
Sbjct: 551  FRKLKNKKRSNHLQQYLV 568


>ref|XP_006577887.1| PREDICTED: RNA polymerase sigma factor sigB-like [Glycine max]
          Length = 564

 Score =  549 bits (1414), Expect = e-153
 Identities = 325/620 (52%), Positives = 385/620 (62%), Gaps = 8/620 (1%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVN-FKSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXML 471
            MSCLLP F C  DTF  + +   +H     SK R ++ F+ QC+                
Sbjct: 1    MSCLLPHFNCHLDTFRTHPYALPTHL----SKTRPNLCFQPQCV---------------- 40

Query: 472  EFEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKLPSLDAHPISIAENKPLAYVG 651
                     L A   S                 +L LEK  +LDA       N    Y+ 
Sbjct: 41   ---------LSATSPST----------------LLSLEKKLALDAPS---DPNTSWPYIA 72

Query: 652  AFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKSTKP 831
            A  PP + N  +    E+LLT+                           ++V      KP
Sbjct: 73   AVSPPLQANFKSTLSAESLLTNEEAVIVAAASEALALAKAAAKVAKDAALLVKK----KP 128

Query: 832  DSTTTGILPEVDTSMVEKSQ--LAHLAERVVVREPKVAEIGLG---EINPASD--PLAES 990
             +       E  + +  KS   L    +++   E  VAE  +G   EI    D  P  E 
Sbjct: 129  PAEA-----EYKSHVSSKSDDLLLKWFKQMEEVEDGVAEESMGAGAEIMEGVDVSPSEEE 183

Query: 991  DDVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXX 1170
             D+EPS EELE L+ QL+ SIAVRS+RQT               N               
Sbjct: 184  SDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKATTNFTSFKPGSSSRRKRV 243

Query: 1171 XXQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFS 1350
              Q+VDY+DP                 EE  LS GIQ LLKLE++QE+L ER G  PTF+
Sbjct: 244  SMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFA 303

Query: 1351 QWAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 1530
            QWAA AGVD +TLRK++NYGI CKDKMIKSNIRLVISIAKNYQG+GMNLQDLVQEGCRGL
Sbjct: 304  QWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGL 363

Query: 1531 VRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 1710
            V+GAEKFD TKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS
Sbjct: 364  VKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 423

Query: 1711 ENGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSE 1890
            ENGR PDDEEVAEATGLSMKRL+AV++TPKAPRSL+QKIGINQ+LKPS+VI+DP+AET+E
Sbjct: 424  ENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAE 483

Query: 1891 DLLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 2070
            + L+KQFMK+DL + LDSLNPRE+QVV+WRFG++DGR KTLQEIGE++GVSRERIRQIES
Sbjct: 484  EQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIES 543

Query: 2071 CAFRKLKNKKRTKHLQQYVM 2130
             AF+KLKNKKRT HLQQY++
Sbjct: 544  SAFKKLKNKKRTNHLQQYLV 563


>gb|EMJ05079.1| hypothetical protein PRUPE_ppa006657mg [Prunus persica]
          Length = 401

 Score =  548 bits (1413), Expect = e-153
 Identities = 282/384 (73%), Positives = 313/384 (81%)
 Frame = +1

Query: 979  LAESDDVEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXX 1158
            + ES+DVE + +E E L  QL++ I  RS RQ                ++          
Sbjct: 17   IKESEDVESTNQEFELLREQLSEGITARSSRQIERKARRAKAAEKAAASVVSVKSGSTSR 76

Query: 1159 XXXXXXQDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGP 1338
                  QDVD++DP                 EE  LSEGIQ LLKLE+LQEEL +RCGG 
Sbjct: 77   KKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQ 136

Query: 1339 PTFSQWAAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEG 1518
            PT +QWAAAAGVD +TLRK+INYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ+G
Sbjct: 137  PTIAQWAAAAGVDQKTLRKRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQG 196

Query: 1519 CRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARK 1698
            CRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+K
Sbjct: 197  CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKK 256

Query: 1699 QLYSENGRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEA 1878
            QLYS NGR P+DEEVAEATGLSMKRL+AV+LTPKAPRSL+QKIGINQ+LKPS+VIADPEA
Sbjct: 257  QLYSVNGRHPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEA 316

Query: 1879 ETSEDLLIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIR 2058
            ET+ED+L+K+FMKQDL KVLDSLN REKQVV+WRFGLEDGRMKTLQEIGELMGVSRERIR
Sbjct: 317  ETAEDMLMKKFMKQDLEKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIR 376

Query: 2059 QIESCAFRKLKNKKRTKHLQQYVM 2130
            QIESCAFRKLKNKKRTKHLQQYV+
Sbjct: 377  QIESCAFRKLKNKKRTKHLQQYVV 400


>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
            lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
            ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  544 bits (1402), Expect = e-152
 Identities = 323/618 (52%), Positives = 382/618 (61%), Gaps = 7/618 (1%)
 Frame = +1

Query: 298  SCLLPQFKCSPDTFAVNFKSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXXXMLEF 477
            SCLLPQFKC PD+F+++F++   +F     N+ S+ F+ QC                   
Sbjct: 3    SCLLPQFKCPPDSFSIHFRT---SFCARKHNKGSVFFQPQCA------------------ 41

Query: 478  EELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKL--PSLDAHPISIAENKPLAYVG 651
                +S   A+  S                 MLD+ KL  PS D    S   ++   Y  
Sbjct: 42   ----VSTSPALLTS-----------------MLDVAKLRLPSFDTDSDSRISDRQWTYTR 80

Query: 652  AFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKSTKP 831
              GP +E         ETLLTS                           +  + + +   
Sbjct: 81   TDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLL 140

Query: 832  DSTTTGILPEVDTSMVEKSQ---LAHLA--ERVVVREPKVAEIGLGEINPASDPLAESDD 996
             S+T     + D    EK +   L HLA  +  +V +   A        PAS+  +  D 
Sbjct: 141  ISSTADKRSKWD-QFTEKERAGILGHLAVSDNGIVSDKITA--------PASNKESPGDL 191

Query: 997  VEPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXX 1176
                 EE+E LE Q + S+AVRS RQT                I                
Sbjct: 192  ESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSNPRKKRLVA 251

Query: 1177 QDVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQW 1356
            Q+VD+NDP                 EE  LS GIQ LLKLERLQ ELTERCG  PTF+QW
Sbjct: 252  QEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQW 311

Query: 1357 AAAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 1536
            A+AAGVD ++LRK+I++G LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR
Sbjct: 312  ASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 371

Query: 1537 GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 1716
            GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE 
Sbjct: 372  GAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSET 431

Query: 1717 GRLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDL 1896
            G+ P +EE+AEATGLSMKRL AV+L+PK PRSLDQKIG+NQ+LKPS+VIADPEA TSED+
Sbjct: 432  GKHPKNEEIAEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDI 491

Query: 1897 LIKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 2076
            LIK+FM+QDL KVLDSL  REKQV++WRFG+EDGRMKTLQEIGE+MGVSRER+RQIES A
Sbjct: 492  LIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSA 551

Query: 2077 FRKLKNKKRTKHLQQYVM 2130
            FRKLKNKKR+ HLQQY++
Sbjct: 552  FRKLKNKKRSNHLQQYLV 569


>emb|CAD20831.2| sigma factor [Spinacia oleracea]
          Length = 575

 Score =  540 bits (1392), Expect = e-151
 Identities = 312/616 (50%), Positives = 383/616 (62%), Gaps = 5/616 (0%)
 Frame = +1

Query: 295  MSCLLPQFKCSPDTFAVNF----KSQSHAFVNSSKNRVSINFRTQCIXXXXXXXXXXXXX 462
            M+CLLPQFKC PDTF+++      S S +  +  +NR  + FR QC              
Sbjct: 1    MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAET 60

Query: 463  XMLEFEELKLSPLEAIPNSVPADRXXXXXXXXXXXXMLDLEKLPSLDAHPISIAENKPLA 642
             + + E+L+L  +E+  NS+ A                               A++    
Sbjct: 61   SIFDVEKLRLPYVESNSNSLSA------------------------------FAQS---T 87

Query: 643  YVGAFGPPSEVNLGANFDKETLLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXMMVSHHKS 822
            ++   G P+EV        + L+ +                           +M  + + 
Sbjct: 88   FLSTLGSPAEVKFDTALTAKLLIENEEAVIAAAAAEAVALARAAAKLAKDAALMAFNSQP 147

Query: 823  TKPDSTTTG-ILPEVDTSMVEKSQLAHLAERVVVREPKVAEIGLGEINPASDPLAESDDV 999
            TKP S   G  L      ++E  Q+  +      R  + +E  L E     D ++E  D+
Sbjct: 148  TKPVSKLEGQSLHFSGAQLLENEQVGSM------RNFEGSENSLRE----GDTVSEPADM 197

Query: 1000 EPSAEELEFLEAQLTKSIAVRSKRQTXXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXXXQ 1179
            EP+ EEL+ LE +L +SI VRS RQ                N+                Q
Sbjct: 198  EPTIEELQLLEVELDESITVRSTRQGERKARRARAAEKVASNVVSVKVGSNSRKKRTSVQ 257

Query: 1180 DVDYNDPXXXXXXXXXXXXXXXXXEEQVLSEGIQVLLKLERLQEELTERCGGPPTFSQWA 1359
            +VDY+DP                 EE  LS GIQ LLKLE+L +EL  R G  P+F QWA
Sbjct: 258  EVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWA 317

Query: 1360 AAAGVDLRTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 1539
            AAAG+D RTLR+++N+G  CKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRG
Sbjct: 318  AAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRG 377

Query: 1540 AEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 1719
            AEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL SENG
Sbjct: 378  AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENG 437

Query: 1720 RLPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAETSEDLL 1899
            + P++EEVAEATGLSMKRL+AV++TPKAPRSLDQKIG N +LKPS+VIADPEAET+EDLL
Sbjct: 438  KQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLL 497

Query: 1900 IKQFMKQDLAKVLDSLNPREKQVVKWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF 2079
             KQFM+QDL KVLD+L+ REKQV++WRFGLEDGRMKTLQEIGELMGVSRERIRQIES AF
Sbjct: 498  TKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAF 557

Query: 2080 RKLKNKKRTKHLQQYV 2127
            RKL+NKK+T +LQQY+
Sbjct: 558  RKLQNKKKTINLQQYM 573