BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00007660
         (1714 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine...   561   e-157
ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601...   556   e-155
ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine...   527   e-147
gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus pe...   506   e-140
ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619...   503   e-139
ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citr...   503   e-139
gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, ...   496   e-138
gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabi...   494   e-137
ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Popu...   493   e-136
ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutr...   490   e-136
gb|EOY18773.1| Pseudouridine synthase family protein isoform 1 [...   490   e-136
ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine...   486   e-134
ref|XP_002879786.1| pseudouridine synthase family protein [Arabi...   484   e-134
ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine...   483   e-134
emb|CBI31423.3| unnamed protein product [Vitis vinifera]              479   e-132
ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsi...   477   e-132
ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, part...   476   e-131
gb|EPS61841.1| hypothetical protein M569_12954, partial [Genlise...   475   e-131
ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine...   467   e-129
gb|ESW15747.1| hypothetical protein PHAVU_007G098900g [Phaseolus...   463   e-128

>ref|XP_004250054.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Solanum lycopersicum]
          Length = 414

 Score =  561 bits (1445), Expect = e-157
 Identities = 290/399 (72%), Positives = 325/399 (81%), Gaps = 9/399 (2%)
 Frame = -3

Query: 1625 LHLSKTSFILPRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSG-----PDSESAD 1461
            LHL++ +    RRH+RT ITSS S+ +T+FNITFA                  P+S+S  
Sbjct: 18   LHLTRAT-PYTRRHIRTFITSSLSSSSTKFNITFAPPKPKPKTKPEPAIPIINPNSDSNS 76

Query: 1460 SSISDL----GDQLYIPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXK 1293
             S+ +L    GDQLYIPWIVRDE GNLTLQ+TPP R L  +A+ ST             K
Sbjct: 77   DSVPNLDAEVGDQLYIPWIVRDEKGNLTLQSTPPARLLHEMANAST-GKKKKKGKEVASK 135

Query: 1292 VKPTAPSVEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGS 1113
                 P+ EPK+SKAARRFYNE FR+PPQRL+KVLAAAGVASRRSSEELIFQG+VTVNGS
Sbjct: 136  AATVVPTPEPKHSKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGS 195

Query: 1112 VCNTPQTKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDF 933
            VC TPQTKVDP RDVIYVNGNRL KKLP KVYLALNKPKGYICSSGEKETKSVMSLFDDF
Sbjct: 196  VCKTPQTKVDPARDVIYVNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDF 255

Query: 932  VKSWNKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGA 753
            +KSW+K++PG PKPRLFTVGRLDVATTGLIIVTNDGEF +++SHPSSNLSKEYIATI+G 
Sbjct: 256  IKSWDKRHPGQPKPRLFTVGRLDVATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDGE 315

Query: 752  VNKRHLITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGL 573
            V+KRHLI ISEGT+I+GVHCTPD VELLP QPD+SRPRLRIVVHEGRNHEVRELVKNAGL
Sbjct: 316  VHKRHLIAISEGTIIDGVHCTPDNVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAGL 375

Query: 572  QIHALKRVRIGNFRLPSDLALGKHVELTTANLRALGWKS 456
            Q+ ALKR+RIG FRLP+DLALGKHVEL  ANL+ALGWKS
Sbjct: 376  QLRALKRIRIGGFRLPADLALGKHVELNQANLKALGWKS 414


>ref|XP_006361680.1| PREDICTED: uncharacterized protein LOC102601559 [Solanum tuberosum]
          Length = 413

 Score =  556 bits (1433), Expect = e-155
 Identities = 284/387 (73%), Positives = 315/387 (81%), Gaps = 8/387 (2%)
 Frame = -3

Query: 1592 RRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXP--------SGPDSESADSSISDLGD 1437
            R H+RT ITSS S+ +T+FNITFA                   S  DS S  +  +++GD
Sbjct: 28   RLHIRTFITSSLSSSSTKFNITFAPPKPKPKPKPEPAIPINSDSDSDSNSVPNLEAEIGD 87

Query: 1436 QLYIPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTAPSVEPKY 1257
            QLYIPWIVRDE GNLTLQ+TPP R L  +A+ ST                   P+ EPK+
Sbjct: 88   QLYIPWIVRDEKGNLTLQSTPPARLLHEMANASTSKKKKKGKEVASKAAT-VVPTPEPKH 146

Query: 1256 SKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTKVDPG 1077
            SKAARRFYNE FR+PPQRL+KVLAAAGVASRRSSEELIFQG+VTVNGSVC TPQTKVDP 
Sbjct: 147  SKAARRFYNENFRDPPQRLSKVLAAAGVASRRSSEELIFQGRVTVNGSVCKTPQTKVDPA 206

Query: 1076 RDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKKNPGLP 897
            RDVIYVNGNRL KKLP KVYLALNKPKGYICSSGEKETKSVMSLFDDF+KSW+K++PG P
Sbjct: 207  RDVIYVNGNRLPKKLPTKVYLALNKPKGYICSSGEKETKSVMSLFDDFIKSWDKRHPGQP 266

Query: 896  KPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLITISEG 717
            KPRLFTVGRLDVATTGLIIVTNDGEF +++SHPSSNLSKEYIATI+G V+KRHLI ISEG
Sbjct: 267  KPRLFTVGRLDVATTGLIIVTNDGEFTHQISHPSSNLSKEYIATIDGEVHKRHLIAISEG 326

Query: 716  TVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKRVRIGN 537
            TVI+GVHC PD VELLP QPD+SRPRLRIVVHEGRNHEVRELVKNAGLQ+ ALKR+RIG 
Sbjct: 327  TVIDGVHCIPDNVELLPGQPDLSRPRLRIVVHEGRNHEVRELVKNAGLQLRALKRIRIGG 386

Query: 536  FRLPSDLALGKHVELTTANLRALGWKS 456
            FRLP+DLALGKHVEL  ANL+ALGWKS
Sbjct: 387  FRLPADLALGKHVELNQANLKALGWKS 413


>ref|XP_002270186.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform
            1 [Vitis vinifera]
          Length = 393

 Score =  527 bits (1358), Expect = e-147
 Identities = 275/393 (69%), Positives = 313/393 (79%), Gaps = 4/393 (1%)
 Frame = -3

Query: 1622 HLSKTSFILPRRHLRTV-ITSSFS---TKTTEFNITFAXXXXXXXXXXPSGPDSESADSS 1455
            HLS+ S  L RRH RT+ + SS S   T + EFNI+FA             P SE+    
Sbjct: 23   HLSRPS--LARRHFRTIPVRSSISPPSTTSAEFNISFAPKSKNPK------PQSET---- 70

Query: 1454 ISDLGDQLYIPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTAP 1275
                   L IPWIVRDENGNL +Q+TPPER+L+ +A                      A 
Sbjct: 71   -------LLIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAKKKKKKEESTA---RAV 120

Query: 1274 SVEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQ 1095
            +VEPKYSKAARRFYNE FR+PPQRL+KVLAAAGVASRR+SEELIF+G+VTVNGSVCNTPQ
Sbjct: 121  AVEPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNTPQ 180

Query: 1094 TKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNK 915
            T+VDP RD+IYVNGNRL KKLPPKVYLALNKPKGYICSSGEKE+KSV+ LFDD++KSWNK
Sbjct: 181  TRVDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSWNK 240

Query: 914  KNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHL 735
            +NPG+PKPR+FTVGRLDVATTGLII+TNDG+FA K+SHPSS LSKEYIATI+G VNKRHL
Sbjct: 241  QNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKRHL 300

Query: 734  ITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALK 555
            I ISEGTVIEGVHCTPD VELLP QP+IS+PRLR+VVHEGRNHEVRELVK+AGLQIH+LK
Sbjct: 301  IAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHSLK 360

Query: 554  RVRIGNFRLPSDLALGKHVELTTANLRALGWKS 456
            R+RIG FRLPSDL  GKHVEL   +L+ALGWKS
Sbjct: 361  RIRIGGFRLPSDLGHGKHVELKQGDLKALGWKS 393


>gb|EMJ19261.1| hypothetical protein PRUPE_ppa006826mg [Prunus persica]
          Length = 393

 Score =  506 bits (1302), Expect = e-140
 Identities = 262/381 (68%), Positives = 301/381 (79%)
 Frame = -3

Query: 1598 LPRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISDLGDQLYIPW 1419
            LPR  +   +++S S+ + EFNITFA             PDS   D     L  QL IPW
Sbjct: 30   LPR--ITCSLSTSSSSSSLEFNITFAPSKPKPKLK----PDSAEPDPEA--LAGQLIIPW 81

Query: 1418 IVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTAPSVEPKYSKAARR 1239
            IVR E+GNL LQ+ PP RFL+A+  +S                +   P+ EPKYSKAARR
Sbjct: 82   IVRGEDGNLKLQSHPPARFLQAIETKSKTKKKKEG-------AEKRVPTAEPKYSKAARR 134

Query: 1238 FYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTKVDPGRDVIYV 1059
            FYNE FR+  QRL+KVLAAAGVASRRSSE+LIF GKVTVNGSVCNTPQ++VDPGRD+IYV
Sbjct: 135  FYNENFRDASQRLSKVLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQSRVDPGRDIIYV 194

Query: 1058 NGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKKNPGLPKPRLFT 879
            NGNRL K+LPPKVYLALNKPKGYIC+SGE   KSV+SLF+D++K+W+K+N G+P+PRLFT
Sbjct: 195  NGNRLPKRLPPKVYLALNKPKGYICASGEN--KSVLSLFEDYLKTWDKRNSGIPRPRLFT 252

Query: 878  VGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLITISEGTVIEGV 699
            VGRLDVATTGLIIVTNDG+FA K+SHPSSNLSKEYIA I G V+KRHL+ ISEGTVIEGV
Sbjct: 253  VGRLDVATTGLIIVTNDGDFAQKISHPSSNLSKEYIAAIEGVVSKRHLLAISEGTVIEGV 312

Query: 698  HCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKRVRIGNFRLPSD 519
            HCTPD VELLPQQPD+SRPRLRIVVHEGRNHEVRELVKNAGL+IH+LKRVRIG FRLPSD
Sbjct: 313  HCTPDSVELLPQQPDMSRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSD 372

Query: 518  LALGKHVELTTANLRALGWKS 456
            L LGKH+ L   +L ALGWKS
Sbjct: 373  LGLGKHMALKQGDLSALGWKS 393


>ref|XP_006485600.1| PREDICTED: uncharacterized protein LOC102619728 [Citrus sinensis]
          Length = 401

 Score =  503 bits (1294), Expect = e-139
 Identities = 262/388 (67%), Positives = 298/388 (76%), Gaps = 4/388 (1%)
 Frame = -3

Query: 1607 SFILPRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISDLGDQLY 1428
            S  + R   R+ IT S S+   +FNI+FA              D ES + S      QL+
Sbjct: 24   SLCIHRTFPRSRITCSSSS--LQFNISFAPPKRKKTQQD----DFESGEGS----EQQLF 73

Query: 1427 IPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTA----PSVEPK 1260
            IPWIVR E+GNL LQT PP R +  LA   TQ                 A    P   PK
Sbjct: 74   IPWIVRGEDGNLKLQTHPPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAAPK 133

Query: 1259 YSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTKVDP 1080
             SKAARRFYN+ FR+ P+RL+KVLAAAGVASRRSSEELIFQG+VTVNGSVCNTPQT+VDP
Sbjct: 134  LSKAARRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDP 193

Query: 1079 GRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKKNPGL 900
             RD+IYVNG RL KKLPPKVYLALNKPKGYICS+GEKE KSVMSLFDD++KSW+K+NPGL
Sbjct: 194  ARDIIYVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGL 253

Query: 899  PKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLITISE 720
            P+PRLFTVGRLDVATTGLIIVTNDG+FA  VSHPSS L KEYIATI+GAVNKRHLI ISE
Sbjct: 254  PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 313

Query: 719  GTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKRVRIG 540
            GTVIEG HCTPD+VELLP QPDI RPR+RIVVHEGRNHEVRELVKNAGL++++LKR+RIG
Sbjct: 314  GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 373

Query: 539  NFRLPSDLALGKHVELTTANLRALGWKS 456
             FRLPSDL +G HVEL  ++L+ +GWKS
Sbjct: 374  GFRLPSDLGIGMHVELKQSDLKLMGWKS 401


>ref|XP_006436494.1| hypothetical protein CICLE_v10031516mg [Citrus clementina]
            gi|557538690|gb|ESR49734.1| hypothetical protein
            CICLE_v10031516mg [Citrus clementina]
          Length = 451

 Score =  503 bits (1294), Expect = e-139
 Identities = 262/388 (67%), Positives = 298/388 (76%), Gaps = 4/388 (1%)
 Frame = -3

Query: 1607 SFILPRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISDLGDQLY 1428
            S  + R   R+ IT S S+   +FNI+FA              D ES + S      QL+
Sbjct: 74   SLCIHRTFPRSRITCSSSS--LQFNISFAPPKRKKTQQD----DFESGEGS----EQQLF 123

Query: 1427 IPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTA----PSVEPK 1260
            IPWIVR E+GNL LQT PP R +  LA   TQ                 A    P   PK
Sbjct: 124  IPWIVRGEDGNLKLQTHPPARLVHTLADAKTQNLKVNKKKNDTSAAAAAAAAGGPKAAPK 183

Query: 1259 YSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTKVDP 1080
             SKAARRFYN+ FR+ P+RL+KVLAAAGVASRRSSEELIFQG+VTVNGSVCNTPQT+VDP
Sbjct: 184  LSKAARRFYNDNFRDTPERLSKVLAAAGVASRRSSEELIFQGQVTVNGSVCNTPQTRVDP 243

Query: 1079 GRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKKNPGL 900
             RD+IYVNG RL KKLPPKVYLALNKPKGYICS+GEKE KSVMSLFDD++KSW+K+NPGL
Sbjct: 244  ARDIIYVNGKRLPKKLPPKVYLALNKPKGYICSAGEKEVKSVMSLFDDYLKSWDKRNPGL 303

Query: 899  PKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLITISE 720
            P+PRLFTVGRLDVATTGLIIVTNDG+FA  VSHPSS L KEYIATI+GAVNKRHLI ISE
Sbjct: 304  PRPRLFTVGRLDVATTGLIIVTNDGDFAQAVSHPSSKLQKEYIATIDGAVNKRHLIAISE 363

Query: 719  GTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKRVRIG 540
            GTVIEG HCTPD+VELLP QPDI RPR+RIVVHEGRNHEVRELVKNAGL++++LKR+RIG
Sbjct: 364  GTVIEGTHCTPDVVELLPPQPDIPRPRIRIVVHEGRNHEVRELVKNAGLKLYSLKRLRIG 423

Query: 539  NFRLPSDLALGKHVELTTANLRALGWKS 456
             FRLPSDL +G HVEL  ++L+ +GWKS
Sbjct: 424  GFRLPSDLGIGMHVELKQSDLKLMGWKS 451


>gb|EOY18774.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
            cacao]
          Length = 398

 Score =  496 bits (1278), Expect = e-138
 Identities = 264/396 (66%), Positives = 302/396 (76%), Gaps = 8/396 (2%)
 Frame = -3

Query: 1619 LSKTSFILPRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSE----SADSSI 1452
            LS   F+ P R L  + +SS    + +FNITFA          P    ++     ++S  
Sbjct: 7    LSLPPFLRPIRALPPITSSS----SLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESPP 62

Query: 1451 SDLGDQLYIPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTA-- 1278
                 QL+IPWIVR E+GNL LQ  PP R + ALA   TQ            K + +A  
Sbjct: 63   LPSNGQLFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVG 122

Query: 1277 -PSVEP-KYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCN 1104
              SVEP K SKAARRFYNE F EPPQRL+KVLAAAGVASRR SEELIF GKVTVNGSVCN
Sbjct: 123  NASVEPPKLSKAARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCN 182

Query: 1103 TPQTKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKS 924
             PQT+VDP +D+IYVNG+RL KKLPPK+YLALNKPKGYICSSGEKE KSV+ LF+D++K 
Sbjct: 183  APQTRVDPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLFEDYLKR 242

Query: 923  WNKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNK 744
            W+K N G PKPRLFTVGRLDVATTGLIIVTNDG+FA K+SHPSSNL+KEYIATI+G V K
Sbjct: 243  WDKMNRGSPKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATIDGEVKK 302

Query: 743  RHLITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIH 564
            RHLI ISEGT IEG+HC PD VELLP+QPD+SRPRLRIVVHEGRNHEVRELVKNAGL+IH
Sbjct: 303  RHLIAISEGTEIEGIHCIPDSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKNAGLEIH 362

Query: 563  ALKRVRIGNFRLPSDLALGKHVELTTANLRALGWKS 456
            +LKRVRIG FRLP+DL LGKHVEL  ++LRA+GWKS
Sbjct: 363  SLKRVRIGGFRLPADLGLGKHVELKQSDLRAMGWKS 398


>gb|EXB96209.1| putative RNA pseudouridine synthase [Morus notabilis]
          Length = 404

 Score =  494 bits (1271), Expect = e-137
 Identities = 258/402 (64%), Positives = 299/402 (74%), Gaps = 12/402 (2%)
 Frame = -3

Query: 1625 LHLSKTSFILPRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISD 1446
            L LS  S     RH+   +  S S+ T+EFNI+FA             P++   DS    
Sbjct: 20   LSLSSLSLRPSIRHILPRVLCSLSSSTSEFNISFAPAKPKPQ------PEATEVDSLFGA 73

Query: 1445 LGDQLYIPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTAPS-- 1272
             G QL+IPWI+R ++GNL LQ+ PP R L A+AH  T+              KPTA    
Sbjct: 74   DGSQLFIPWIIRGDDGNLKLQSHPPARLLHAMAHADTKNSKKK---------KPTAAEKK 124

Query: 1271 ----------VEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTV 1122
                       EPKYSKAARRFYNE FRE  QRL+KVLAAAGVASRR+SEELI +G+VTV
Sbjct: 125  KKNDKADKSVAEPKYSKAARRFYNENFRESDQRLSKVLAAAGVASRRNSEELILEGRVTV 184

Query: 1121 NGSVCNTPQTKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLF 942
            NGSVCNTPQT+VDP +DVIYVNGNRL K+LPPKVYLALNKPKGYICS G+K  KSVMSLF
Sbjct: 185  NGSVCNTPQTRVDPAKDVIYVNGNRLPKRLPPKVYLALNKPKGYICSVGDK--KSVMSLF 242

Query: 941  DDFVKSWNKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATI 762
            DD++K W+K+N G  KPRLFTVGRLDVATTGLIIVTNDG+FA K+SHPSSNLSKEYIATI
Sbjct: 243  DDYLKIWDKRNLGQSKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATI 302

Query: 761  NGAVNKRHLITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKN 582
             G V+K+HL+ ISEGT I+GVHC PD VELLP QP++ RPRLR+VVH+GR HEVREL+KN
Sbjct: 303  EGTVSKKHLLVISEGTFIDGVHCVPDSVELLPNQPEMPRPRLRVVVHDGRKHEVRELMKN 362

Query: 581  AGLQIHALKRVRIGNFRLPSDLALGKHVELTTANLRALGWKS 456
            AGL+IH+LKRVRIG +RLPSDL LGKHVEL   +L ALGWKS
Sbjct: 363  AGLEIHSLKRVRIGGYRLPSDLGLGKHVELKQGDLSALGWKS 404


>ref|XP_002311995.2| hypothetical protein POPTR_0008s03540g [Populus trichocarpa]
            gi|550332354|gb|EEE89362.2| hypothetical protein
            POPTR_0008s03540g [Populus trichocarpa]
          Length = 397

 Score =  493 bits (1269), Expect = e-136
 Identities = 259/391 (66%), Positives = 292/391 (74%), Gaps = 2/391 (0%)
 Frame = -3

Query: 1625 LHLSKTSFILPRRHL-RTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSIS 1449
            LH   T F  P   L    I  +  T + EFNITFA              D+    +S+S
Sbjct: 10   LHHQLTFFRKPSLSLLNKSIRPTRITASLEFNITFAPPKPKPKLPANLQTDA----ASLS 65

Query: 1448 DLGDQLYIPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTAP-S 1272
                QL+IPWIVR E+GNL LQ+ PP R + A+A   TQ                 A   
Sbjct: 66   LPPGQLFIPWIVRGEDGNLKLQSNPPARLIHAIADAKTQPKKKKDKVKKESSGNVKAKLE 125

Query: 1271 VEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQT 1092
             EP  SKAARRFYNE FR+  QRL+KVLAAAGVASRRSSE LIF+GKVTVNGSVCNTPQT
Sbjct: 126  AEPTRSKAARRFYNENFRDQAQRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQT 185

Query: 1091 KVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKK 912
            +VDPGRD IYVNGNRL KKLPPK+Y+ALNKPKGYICS GEKE+KSVM L DD+ +SW+K+
Sbjct: 186  RVDPGRDAIYVNGNRLPKKLPPKIYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKR 245

Query: 911  NPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLI 732
            NPGLPKPRLFTVGRLDVATTGLIIVTNDG+FA +++HPSSNLSKEYIAT++G V+KRHL 
Sbjct: 246  NPGLPKPRLFTVGRLDVATTGLIIVTNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLF 305

Query: 731  TISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKR 552
             +SEGTVIEGV C PD VELLPQQPD  RPRLRIVVHEGRNHEVRELVKNAGL+IH+LKR
Sbjct: 306  AVSEGTVIEGVRCVPDSVELLPQQPDRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKR 365

Query: 551  VRIGNFRLPSDLALGKHVELTTANLRALGWK 459
            VRIG FRLPSDL LGKH EL   +L+ LGWK
Sbjct: 366  VRIGGFRLPSDLGLGKHAELKQTDLKTLGWK 396


>ref|XP_006411139.1| hypothetical protein EUTSA_v10016747mg [Eutrema salsugineum]
            gi|557112308|gb|ESQ52592.1| hypothetical protein
            EUTSA_v10016747mg [Eutrema salsugineum]
          Length = 403

 Score =  490 bits (1262), Expect = e-136
 Identities = 251/388 (64%), Positives = 298/388 (76%), Gaps = 8/388 (2%)
 Frame = -3

Query: 1595 PRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISDLG-DQLYIPW 1419
            P R LR  ++SS S++  EF+ITFA             P   +  S+    G  QL+IPW
Sbjct: 29   PIRTLRCSLSSSSSSEPLEFDITFA-------------PPKPTPSSTRGGAGVQQLFIPW 75

Query: 1418 IVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVK-----PTAPSV--EPK 1260
            IVR E+G L +Q+ PP R + ALA  +TQ                    P++P+   +PK
Sbjct: 76   IVRGEDGKLKVQSQPPARLIHALADATTQNPKKKDKSKKKKPQSTSASTPSSPASHSKPK 135

Query: 1259 YSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTKVDP 1080
             SKAARRFYNE F++PPQRL+KVLAAAGVASRR+SEELIF GKVTVNGS+C  PQ +VDP
Sbjct: 136  LSKAARRFYNENFKDPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGSLCTAPQIRVDP 195

Query: 1079 GRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKKNPGL 900
             RD+IYVNGNR+ KKLPPKVY ALNKPKGYICSSGEKE KSV+SLFDDF+ SW+K+NPG 
Sbjct: 196  TRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFDDFLASWDKRNPGT 255

Query: 899  PKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLITISE 720
            PKPRLFTVGRLDVATTGLI+VTNDG+FA K+SHPSS+L KEYI T+ G V+KRHL+TISE
Sbjct: 256  PKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDVHKRHLMTISE 315

Query: 719  GTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKRVRIG 540
            GT++EGVHC PD VEL+P+Q DI R RLRIVVHEGRNHEVRE+VKNAGL++H+LKRVRIG
Sbjct: 316  GTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVREIVKNAGLEVHSLKRVRIG 375

Query: 539  NFRLPSDLALGKHVELTTANLRALGWKS 456
             FRLPSDL LGKHVEL  + L+A+GWKS
Sbjct: 376  GFRLPSDLGLGKHVELKQSELKAMGWKS 403


>gb|EOY18773.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 453

 Score =  490 bits (1261), Expect = e-136
 Identities = 264/402 (65%), Positives = 302/402 (75%), Gaps = 14/402 (3%)
 Frame = -3

Query: 1619 LSKTSFILPRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSE----SADSSI 1452
            LS   F+ P R L  + +SS    + +FNITFA          P    ++     ++S  
Sbjct: 56   LSLPPFLRPIRALPPITSSS----SLQFNITFAPPNPKLKPRTPPNLKNDVVLDDSESPP 111

Query: 1451 SDLGDQLYIPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTA-- 1278
                 QL+IPWIVR E+GNL LQ  PP R + ALA   TQ            K + +A  
Sbjct: 112  LPSNGQLFIPWIVRGEDGNLKLQAHPPARLIHALADAKTQKPKKKVDKAVKKKKEISAVG 171

Query: 1277 -PSVEP-KYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCN 1104
              SVEP K SKAARRFYNE F EPPQRL+KVLAAAGVASRR SEELIF GKVTVNGSVCN
Sbjct: 172  NASVEPPKLSKAARRFYNENFTEPPQRLSKVLAAAGVASRRGSEELIFDGKVTVNGSVCN 231

Query: 1103 TPQ------TKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLF 942
             PQ      T+VDP +D+IYVNG+RL KKLPPK+YLALNKPKGYICSSGEKE KSV+ LF
Sbjct: 232  APQASDNLQTRVDPAKDIIYVNGSRLPKKLPPKIYLALNKPKGYICSSGEKEFKSVLDLF 291

Query: 941  DDFVKSWNKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATI 762
            +D++K W+K N G PKPRLFTVGRLDVATTGLIIVTNDG+FA K+SHPSSNL+KEYIATI
Sbjct: 292  EDYLKRWDKMNRGSPKPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLNKEYIATI 351

Query: 761  NGAVNKRHLITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKN 582
            +G V KRHLI ISEGT IEG+HC PD VELLP+QPD+SRPRLRIVVHEGRNHEVRELVKN
Sbjct: 352  DGEVKKRHLIAISEGTEIEGIHCIPDSVELLPRQPDLSRPRLRIVVHEGRNHEVRELVKN 411

Query: 581  AGLQIHALKRVRIGNFRLPSDLALGKHVELTTANLRALGWKS 456
            AGL+IH+LKRVRIG FRLP+DL LGKHVEL  ++LRA+GWKS
Sbjct: 412  AGLEIHSLKRVRIGGFRLPADLGLGKHVELKQSDLRAMGWKS 453


>ref|XP_004308770.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Fragaria vesca subsp. vesca]
          Length = 397

 Score =  486 bits (1251), Expect = e-134
 Identities = 256/390 (65%), Positives = 297/390 (76%)
 Frame = -3

Query: 1625 LHLSKTSFILPRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISD 1446
            L   ++  + P R L  +  SS    + EFNITFA             PD  S  +S S 
Sbjct: 15   LFFKRSLSLTPFRTLPRLTCSS----SLEFNITFAPAPKPK-------PDPNSLPASSSS 63

Query: 1445 LGDQLYIPWIVRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTAPSVE 1266
             G QL+IPWIVR E+G L LQ+ PP R L  +A   T+              K    + E
Sbjct: 64   SGQQLFIPWIVRGEDGKLKLQSHPPARLLHEMAQADTKTKSKKNKDTAQK--KQRVLTAE 121

Query: 1265 PKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTKV 1086
            PK+SKAARRFYNE FRE  QRL+KVLAAAGVASRRSSE+LIF GKVTVNGSVCNTPQT V
Sbjct: 122  PKHSKAARRFYNENFRES-QRLSKVLAAAGVASRRSSEQLIFDGKVTVNGSVCNTPQTPV 180

Query: 1085 DPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKKNP 906
            DPGRD+IYVNGNRL KKLPPKVYLALNKPKGYIC++GEK  KSV+SLFDD++KSW+K+NP
Sbjct: 181  DPGRDIIYVNGNRLPKKLPPKVYLALNKPKGYICAAGEK--KSVLSLFDDYLKSWDKRNP 238

Query: 905  GLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLITI 726
            G P+PRLFTVGRLDVATTGLI+VTNDG+FA  +SHPS+NL+KEYIA I G+V+K+ LI I
Sbjct: 239  GTPRPRLFTVGRLDVATTGLIVVTNDGDFAQSISHPSANLTKEYIAVIEGSVSKKSLIAI 298

Query: 725  SEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKRVR 546
            SEGTVI+GVHCTPD VELLPQQP+ISR RLRIVVHEGRNHEVRELVK AGL+IH+LKRVR
Sbjct: 299  SEGTVIDGVHCTPDSVELLPQQPEISRSRLRIVVHEGRNHEVRELVKKAGLEIHSLKRVR 358

Query: 545  IGNFRLPSDLALGKHVELTTANLRALGWKS 456
            IG FRLP++L LG H+EL   +L ALGWK+
Sbjct: 359  IGGFRLPTNLGLGTHMELRQGDLSALGWKT 388


>ref|XP_002879786.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297325625|gb|EFH56045.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 412

 Score =  484 bits (1247), Expect = e-134
 Identities = 246/395 (62%), Positives = 297/395 (75%), Gaps = 15/395 (3%)
 Frame = -3

Query: 1595 PRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISDLGDQLYIPWI 1416
            P R LR  ++SS S++  EF+I+FA             P  + + +       QL+IPWI
Sbjct: 30   PIRTLRCSVSSSSSSEPIEFDISFAP------------PKPKPSSTRGGATPQQLFIPWI 77

Query: 1415 VRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTAPS------------ 1272
            VR ++G L LQ+ PP R +  LA  +T             + + T+ S            
Sbjct: 78   VRGDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKPKKKQPQATSSSASATASASSPAS 137

Query: 1271 ---VEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNT 1101
               V+PK SKAARRFYNE F+EPPQRL+KVLAAAGVASRR+SEELIF GKVTVNG +CNT
Sbjct: 138  HSEVKPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNT 197

Query: 1100 PQTKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSW 921
            PQT+VDP RD+IYVNGNR+ KKLPPKVY ALNKPKGYICSSGEKE KSV+SLFD+++ SW
Sbjct: 198  PQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSVISLFDEYLSSW 257

Query: 920  NKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKR 741
            +K+NPG PKPRLFTVGRLDVATTGLI+VTNDG+FA K+SHPSS+L KEYI T+ G ++KR
Sbjct: 258  DKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKR 317

Query: 740  HLITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHA 561
            HL+ ISEGT++EGVHC PD VEL+P+Q DI R RLRIVVHEGRNHEVRELVKNAGL++H+
Sbjct: 318  HLMAISEGTIVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHS 377

Query: 560  LKRVRIGNFRLPSDLALGKHVELTTANLRALGWKS 456
            LKRVRIG FRLPSDL LGKHVEL  + L+A+GWK+
Sbjct: 378  LKRVRIGGFRLPSDLGLGKHVELKQSELKAMGWKN 412


>ref|XP_004140075.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cucumis sativus] gi|449490423|ref|XP_004158601.1|
            PREDICTED: uncharacterized RNA pseudouridine synthase
            aq_1464-like [Cucumis sativus]
          Length = 398

 Score =  483 bits (1244), Expect = e-134
 Identities = 254/374 (67%), Positives = 292/374 (78%), Gaps = 4/374 (1%)
 Frame = -3

Query: 1565 SSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSI---SDLGDQLYIPWIVRDENGN 1395
            SS S+ + EFNITFA             P SE  D       + G QL+IPWIVR E+GN
Sbjct: 41   SSSSSSSLEFNITFAPPKPK--------PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGN 92

Query: 1394 LTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTAPSVEP-KYSKAARRFYNERFR 1218
            L LQ+ PP RFL +++   T+             V    P  EP K+SKAARRFYNE  R
Sbjct: 93   LKLQSHPPTRFLHSVSEDETKPKKKK--------VSAGKPITEPPKHSKAARRFYNENIR 144

Query: 1217 EPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTKVDPGRDVIYVNGNRLAK 1038
            E  QRL+KVLAAAGVASRRSSEELIF G+VTVNGSVCNTPQT+VDP RD+IYVNGNRL K
Sbjct: 145  ESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPK 204

Query: 1037 KLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKKNPGLPKPRLFTVGRLDVA 858
            KLPPKVYLALNKPKGYICSSG+KE+KSV+SLFDD++KSW+K  PG PKPRLFTVGRLDVA
Sbjct: 205  KLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVA 264

Query: 857  TTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLITISEGTVIEGVHCTPDLV 678
            TTGLIIVTNDG+FA  +SHPSS LSKEYIA I+G V+K++LI ISEGT+I+GVHCTPD V
Sbjct: 265  TTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTVSKQNLIAISEGTIIDGVHCTPDSV 324

Query: 677  ELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKRVRIGNFRLPSDLALGKHV 498
            ELLP+QPDIS+ RLRIVVHEGRNHEVRELVK AGL+I++LKRVRIG FRLPSDL LG + 
Sbjct: 325  ELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYT 384

Query: 497  ELTTANLRALGWKS 456
            EL  + L+A+GWKS
Sbjct: 385  ELKQSELKAIGWKS 398


>emb|CBI31423.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score =  479 bits (1234), Expect = e-132
 Identities = 231/275 (84%), Positives = 258/275 (93%)
 Frame = -3

Query: 1280 APSVEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNT 1101
            A +VEPKYSKAARRFYNE FR+PPQRL+KVLAAAGVASRR+SEELIF+G+VTVNGSVCNT
Sbjct: 22   AVAVEPKYSKAARRFYNENFRDPPQRLSKVLAAAGVASRRNSEELIFEGRVTVNGSVCNT 81

Query: 1100 PQTKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSW 921
            PQT+VDP RD+IYVNGNRL KKLPPKVYLALNKPKGYICSSGEKE+KSV+ LFDD++KSW
Sbjct: 82   PQTRVDPARDMIYVNGNRLPKKLPPKVYLALNKPKGYICSSGEKESKSVLCLFDDYLKSW 141

Query: 920  NKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKR 741
            NK+NPG+PKPR+FTVGRLDVATTGLII+TNDG+FA K+SHPSS LSKEYIATI+G VNKR
Sbjct: 142  NKQNPGVPKPRIFTVGRLDVATTGLIILTNDGDFAQKLSHPSSKLSKEYIATIDGVVNKR 201

Query: 740  HLITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHA 561
            HLI ISEGTVIEGVHCTPD VELLP QP+IS+PRLR+VVHEGRNHEVRELVK+AGLQIH+
Sbjct: 202  HLIAISEGTVIEGVHCTPDSVELLPPQPNISKPRLRVVVHEGRNHEVRELVKSAGLQIHS 261

Query: 560  LKRVRIGNFRLPSDLALGKHVELTTANLRALGWKS 456
            LKR+RIG FRLPSDL  GKHVEL   +L+ALGWKS
Sbjct: 262  LKRIRIGGFRLPSDLGHGKHVELKQGDLKALGWKS 296


>ref|NP_181447.2| protein SUPPRESSOR OF VARIEGATION 1 [Arabidopsis thaliana]
            gi|21617894|gb|AAM66944.1| unknown [Arabidopsis thaliana]
            gi|26450440|dbj|BAC42334.1| unknown protein [Arabidopsis
            thaliana] gi|330254545|gb|AEC09639.1| pseudouridine
            synthase family protein [Arabidopsis thaliana]
          Length = 410

 Score =  477 bits (1228), Expect = e-132
 Identities = 246/394 (62%), Positives = 295/394 (74%), Gaps = 14/394 (3%)
 Frame = -3

Query: 1595 PRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISDLGDQLYIPWI 1416
            P R LR  ++SS S++  EF+I+FA             P   S    ++    QL+IPWI
Sbjct: 30   PIRTLRCSVSSS-SSEPIEFDISFAPPK----------PKPSSTHGGVTP--QQLFIPWI 76

Query: 1415 VRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTAPS------------ 1272
            VR ++G L LQ+ PP R +  LA  +T             + + T+ S            
Sbjct: 77   VRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKSKKKQPQATSSSSATTTASSPASH 136

Query: 1271 --VEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTP 1098
              V+PK SKAARRFYNE F+E PQRL+KVLAAAGVASRR+SEELIF GKVTVNG +CNTP
Sbjct: 137  SEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNTP 196

Query: 1097 QTKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWN 918
            QT+VDP RD+IYVNGNR+ KKLPPKVY ALNKPKGYICSSGEKE KS +SLFD+++ SW+
Sbjct: 197  QTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWD 256

Query: 917  KKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRH 738
            K+NPG PKPRLFTVGRLDVATTGLI+VTNDG+FA K+SHPSS+L KEYI T+ G ++KRH
Sbjct: 257  KRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRH 316

Query: 737  LITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHAL 558
            L+ ISEGT++EGVHC PD VEL+P+Q DI R RLRIVVHEGRNHEVRELVKNAGL++H+L
Sbjct: 317  LMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSL 376

Query: 557  KRVRIGNFRLPSDLALGKHVELTTANLRALGWKS 456
            KRVRIG FRLPSDL LGKHVEL  + L+ALGWK+
Sbjct: 377  KRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410


>ref|XP_006294188.1| hypothetical protein CARUB_v10023183mg, partial [Capsella rubella]
            gi|482562896|gb|EOA27086.1| hypothetical protein
            CARUB_v10023183mg, partial [Capsella rubella]
          Length = 456

 Score =  476 bits (1226), Expect = e-131
 Identities = 246/394 (62%), Positives = 292/394 (74%), Gaps = 15/394 (3%)
 Frame = -3

Query: 1595 PRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISDLGDQLYIPWI 1416
            P R LR  ++SS  ++  EF+I+FA             P   S    +S    QL+IPWI
Sbjct: 76   PIRTLRCSVSSS--SEPLEFDISFAPPK----------PKPASTRGGVSP--QQLFIPWI 121

Query: 1415 VRDENGNLTLQTTPPERFLKALAHQSTQXXXXXXXXXXXXKVKPTA-------------- 1278
            VR ++G L LQ+ PP R + +LA  +T             + + T+              
Sbjct: 122  VRGDDGTLKLQSQPPARLIHSLAIDATTQNPKKKEKSKKKQTQATSSSATASSSASASSP 181

Query: 1277 -PSVEPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNT 1101
             P   PK SKAARRFYNE F+EPPQRL+KVLAAAGVASRR+SEELIF GKVTVNG +CNT
Sbjct: 182  PPQSVPKLSKAARRFYNENFKEPPQRLSKVLAAAGVASRRTSEELIFDGKVTVNGILCNT 241

Query: 1100 PQTKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSW 921
            PQT+VDP RD+IYVNGNR+ KKLPPKVY ALNKPKGYICSSGEKE KSV+SLFD+++ SW
Sbjct: 242  PQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKGYICSSGEKEVKSVISLFDEYMASW 301

Query: 920  NKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKR 741
            +K+NPG PKPRLFTVGRLDVATTGLIIVTNDG+FA ++SHPSS+L KEYI T+ G ++KR
Sbjct: 302  DKRNPGTPKPRLFTVGRLDVATTGLIIVTNDGDFAQQLSHPSSSLPKEYITTVVGDIHKR 361

Query: 740  HLITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHA 561
            HL+ ISEGT++EGVHC PDLVEL+P+Q DI R RLRIVVHEGRNHEVRELVKNAGL +H+
Sbjct: 362  HLMAISEGTIVEGVHCVPDLVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLVVHS 421

Query: 560  LKRVRIGNFRLPSDLALGKHVELTTANLRALGWK 459
            LKRVRIG FRLPSDL LGKH EL  + L+ LGWK
Sbjct: 422  LKRVRIGGFRLPSDLGLGKHAELKQSELKVLGWK 455


>gb|EPS61841.1| hypothetical protein M569_12954, partial [Genlisea aurea]
          Length = 273

 Score =  475 bits (1223), Expect = e-131
 Identities = 232/273 (84%), Positives = 253/273 (92%)
 Frame = -3

Query: 1268 EPKYSKAARRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTK 1089
            EPK+SKAARRFYNERFREPPQRLAKVLA+AGVASRRS EELIFQGKV+VNGSVC TPQT+
Sbjct: 1    EPKFSKAARRFYNERFREPPQRLAKVLASAGVASRRSCEELIFQGKVSVNGSVCKTPQTR 60

Query: 1088 VDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKKN 909
            VDPG+DVIYVNG RLAKKLPPKVYLALNKPKGYICS GEKETKSV+SL DDF KSW ++N
Sbjct: 61   VDPGQDVIYVNGCRLAKKLPPKVYLALNKPKGYICSVGEKETKSVISLLDDFTKSWRRRN 120

Query: 908  PGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLIT 729
            PG+P+PRLFTVGRLDVAT+GLIIVTNDGEFANK+SHPSSNLSKEYIATING V+K+ L+T
Sbjct: 121  PGVPQPRLFTVGRLDVATSGLIIVTNDGEFANKISHPSSNLSKEYIATINGTVSKQSLLT 180

Query: 728  ISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKRV 549
            IS+GT I+GVHCTPD VELLP QPD+S+PR+RIVVHEGR HEVRELV+NAGLQIHALKRV
Sbjct: 181  ISKGTTIDGVHCTPDSVELLPPQPDVSKPRIRIVVHEGRKHEVRELVENAGLQIHALKRV 240

Query: 548  RIGNFRLPSDLALGKHVELTTANLRALGWKS*E 450
            RIG FRLP DL LGKHVEL  ANLRALGWK  E
Sbjct: 241  RIGGFRLPRDLGLGKHVELNDANLRALGWKDLE 273


>ref|XP_004496237.1| PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464-like
            [Cicer arietinum]
          Length = 410

 Score =  467 bits (1201), Expect = e-129
 Identities = 243/380 (63%), Positives = 285/380 (75%), Gaps = 8/380 (2%)
 Frame = -3

Query: 1580 RTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISDLGDQLYIPWIVRDEN 1401
            RT+   + S+   +FNI+F+             P +ES +    D   QL IPWIVR E+
Sbjct: 27   RTLPRFTCSSSPFKFNISFSPSKPKPNPKPE--PQTESPNQFPDDNEGQLIIPWIVRGED 84

Query: 1400 GNLTLQTTPPERFLKALAHQST--------QXXXXXXXXXXXXKVKPTAPSVEPKYSKAA 1245
            GN  L + PP  FLKA+A+  T        Q            KV+ TAP   P+YSKAA
Sbjct: 85   GNFKLLSEPPPSFLKAMANDKTGTKKSDKNQTTKNKKKSENETKVRATAP---PQYSKAA 141

Query: 1244 RRFYNERFREPPQRLAKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTKVDPGRDVI 1065
            RRFYNE F++   RL+KVLAA+GVASRRS E+LIF+GKVTVNGSVCNTPQT+VDP +DVI
Sbjct: 142  RRFYNENFKDSGTRLSKVLAASGVASRRSCEDLIFEGKVTVNGSVCNTPQTRVDPAKDVI 201

Query: 1064 YVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFVKSWNKKNPGLPKPRL 885
            YVNG+RL K+ P KVYLALNKPKGYICSSGEKE+KSV+SLFDDF+ SW+KK+PG+P PRL
Sbjct: 202  YVNGSRLPKRQPHKVYLALNKPKGYICSSGEKESKSVLSLFDDFLSSWDKKHPGVPMPRL 261

Query: 884  FTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAVNKRHLITISEGTVIE 705
            FTVGRLDVATTGL+IVTNDG+FA ++SHPSSN SKEYIAT+NG V+KRHL  ISEGT IE
Sbjct: 262  FTVGRLDVATTGLLIVTNDGDFAQRLSHPSSNFSKEYIATVNGLVHKRHLTAISEGTTIE 321

Query: 704  GVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQIHALKRVRIGNFRLP 525
            GVHC PD VELLP  PD  R RLRIVVH+GR HEVRELVKNAGL+IH+LKRVRIG FRLP
Sbjct: 322  GVHCVPDSVELLPSMPDAQRARLRIVVHDGRKHEVRELVKNAGLEIHSLKRVRIGGFRLP 381

Query: 524  SDLALGKHVELTTANLRALG 465
             DL LGK++EL    L+ALG
Sbjct: 382  PDLGLGKYIELNPTKLKALG 401


>gb|ESW15747.1| hypothetical protein PHAVU_007G098900g [Phaseolus vulgaris]
          Length = 403

 Score =  463 bits (1192), Expect = e-128
 Identities = 252/398 (63%), Positives = 294/398 (73%), Gaps = 10/398 (2%)
 Frame = -3

Query: 1619 LSKTSF-ILPRRHLRTVITSSFSTKTTEFNITFAXXXXXXXXXXPSGPDSESADSSISDL 1443
            LS  SF ILPR      +T SFS+ +  FNI+FA             P++      +S+ 
Sbjct: 22   LSLASFRILPR------LTCSFSS-SINFNISFAPPKPKPK------PNNLHPHPDLSNE 68

Query: 1442 GD-QLYIPWIVRDENGNLTLQTTPPERFLKALA-------HQSTQXXXXXXXXXXXXKVK 1287
             D  L IPWIVR E+GNL LQ+ PP   L A+A         S Q            K++
Sbjct: 69   PDGPLLIPWIVRGEDGNLKLQSEPPPSLLNAIATAQTGTRKDSNQKTKTTAATTKPQKIR 128

Query: 1286 PTAPSVEPKYSKAARRFYNERFREPP-QRLAKVLAAAGVASRRSSEELIFQGKVTVNGSV 1110
             TAP   P++SKAARRFYN+  +E    RL+KVLAA+GVASRRS EELIF+GKVTVNGSV
Sbjct: 129  ATAP---PQHSKAARRFYNQNIKESSGARLSKVLAASGVASRRSCEELIFEGKVTVNGSV 185

Query: 1109 CNTPQTKVDPGRDVIYVNGNRLAKKLPPKVYLALNKPKGYICSSGEKETKSVMSLFDDFV 930
            CNTPQT+VDP +DVIYVNGNRL K+ P KVYLALNKPKGYICSSGE E+KSV+SLFDDF+
Sbjct: 186  CNTPQTRVDPAKDVIYVNGNRLPKRQPQKVYLALNKPKGYICSSGENESKSVISLFDDFL 245

Query: 929  KSWNKKNPGLPKPRLFTVGRLDVATTGLIIVTNDGEFANKVSHPSSNLSKEYIATINGAV 750
             +W KK PG+P PRLFTVGRLDVATTGLIIVTNDG+FA K+SHPSSNLSKEYIAT++G V
Sbjct: 246  NTWGKKRPGVPTPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATVDGLV 305

Query: 749  NKRHLITISEGTVIEGVHCTPDLVELLPQQPDISRPRLRIVVHEGRNHEVRELVKNAGLQ 570
             KRHL+ ISEGT IEGVHC PD VE+LP+Q D+ R R+RIVVHEGR HEVRELVKNAGL+
Sbjct: 306  YKRHLMAISEGTTIEGVHCVPDAVEILPRQADMQRARIRIVVHEGRKHEVRELVKNAGLE 365

Query: 569  IHALKRVRIGNFRLPSDLALGKHVELTTANLRALGWKS 456
            IH+LKR+RIG FRLP DL LGK++EL   NL ALGWKS
Sbjct: 366  IHSLKRIRIGGFRLPPDLGLGKYIELNPTNLNALGWKS 403