BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00006376
         (4556 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlise...  2000   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...  1977   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...  1965   0.0  
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  1954   0.0  
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]         1876   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...  1852   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  1821   0.0  
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...  1793   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...  1761   0.0  
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...  1742   0.0  
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...  1729   0.0  
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...  1729   0.0  
ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III s...  1715   0.0  
gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus...  1714   0.0  
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...  1709   0.0  
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...  1697   0.0  
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...  1689   0.0  
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab...  1680   0.0  
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr...  1679   0.0  
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana...  1673   0.0  

>gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlisea aurea]
          Length = 1368

 Score = 2000 bits (5181), Expect = 0.0
 Identities = 1007/1387 (72%), Positives = 1146/1387 (82%), Gaps = 2/1387 (0%)
 Frame = -2

Query: 4474 IQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDNGLLDPHM 4295
            +Q TKQPY EDVG RRIESI FST SG+EVLKT  VEV +G YYD  KKP+ NGLLD  M
Sbjct: 1    LQSTKQPYIEDVGSRRIESINFSTLSGSEVLKTAVVEVYKGSYYDANKKPVSNGLLDMRM 60

Query: 4294 GPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCSRVLLEEK 4115
            GP NK   C TC+G F ECPGH GYLALALPVYNVGYL+ IVDI+KCICK CSRVLLEEK
Sbjct: 61   GPPNKRSVCGTCHGNFQECPGHYGYLALALPVYNVGYLSNIVDILKCICKNCSRVLLEEK 120

Query: 4114 ERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVKRAPLRIQ 3935
            E   FL+KMRN + EPLKK ++ K +VK+CN+ AGS +  KC RCG+INGMVKRAP ++ 
Sbjct: 121  EHHGFLRKMRNPRLEPLKKTDLFKKIVKRCNSKAGSNKLAKCPRCGHINGMVKRAPYKVM 180

Query: 3934 HDRAKVVDNYLDECQSAISHTKEYRGNANVSSTIDPKIAYQLLKNMLDEDCELLYLNDRP 3755
            +DR +V+D+ ++ECQSA    K  RGN   +ST+D    ++LL+NMLDEDCELLY++DRP
Sbjct: 181  YDRGRVIDSQMEECQSAGPSMKASRGNT--TSTLDALFVFRLLRNMLDEDCELLYIHDRP 238

Query: 3754 EKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLETNLHNRSL 3575
            EKL+VTNILVPP AIRPSVFVDGGTQSNENDITERLK II+ANA+L Q++LETN++ + +
Sbjct: 239  EKLMVTNILVPPTAIRPSVFVDGGTQSNENDITERLKYIIEANANLSQQLLETNIYKKGV 298

Query: 3574 TSWDDLQMEVAQYINSDVRGVPLYMT-AARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 3398
            TSW+ LQ+EVAQYINSD RG+PLY   +++PLSGFVQRLKGKQGRFRGNLSGKRVEYTGR
Sbjct: 299  TSWETLQIEVAQYINSDTRGLPLYGGGSSKPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 358

Query: 3397 TVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKYIRQPDG 3218
            TVISPDPNLKI +VA+PILMA+ILTYPERVSH NI +LR+CVR GPN+YPGAK+IRQPDG
Sbjct: 359  TVISPDPNLKITEVAVPILMAKILTYPERVSHQNIAELRECVRRGPNEYPGAKFIRQPDG 418

Query: 3217 TLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLR 3038
            T ISL  + RK HAD LKYG IVDRHL+DGDIVLFNRQPSLHRMSIM HRARIMPWRTLR
Sbjct: 419  TEISLRFSSRKIHADALKYGDIVDRHLKDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLR 478

Query: 3037 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2858
            FNESVCNPYNADFDGDEMNMHVPQTEE+R EA+MLMGVQNNLCTPKNGE+LVASTQDFLT
Sbjct: 479  FNESVCNPYNADFDGDEMNMHVPQTEESRAEAIMLMGVQNNLCTPKNGEVLVASTQDFLT 538

Query: 2857 SSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVLLRPHAK 2678
            SS+LITRKDTFYDRS+FSL+C+++ D    +DLP PA+VKP ELWTGKQ+FSVLLRP   
Sbjct: 539  SSFLITRKDTFYDRSAFSLICAFVSDGLGTVDLPMPAVVKPVELWTGKQIFSVLLRPDKD 598

Query: 2677 MRVYLNLTLAEKNYGKSKETMCPKDGFVYIRNSELISGQLGKATLGNGNKDGLYSVLLRD 2498
             +V++NLT+AEK Y KS ETMCP+DGFV IRNSELISGQLGKATLGNG+KDGLYS+LLRD
Sbjct: 599  RKVFVNLTVAEKIYVKSGETMCPRDGFVCIRNSELISGQLGKATLGNGSKDGLYSILLRD 658

Query: 2497 YNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYGQCTDYIES 2318
            Y  HAAA CMNRLAKLSARWIGNHGFSIGINDVQPG  LN EKK  ID EYGQC  YIES
Sbjct: 659  YGAHAAADCMNRLAKLSARWIGNHGFSIGINDVQPGDILNTEKKTVIDDEYGQCIRYIES 718

Query: 2317 YKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQCGSKGSPI 2138
            YKSG L+LLPGCN AETLEAKITGTLN IR+TTA VCM NL+WRNSPLIMSQCGSKGSPI
Sbjct: 719  YKSGKLELLPGCNKAETLEAKITGTLNKIRDTTAEVCMTNLSWRNSPLIMSQCGSKGSPI 778

Query: 2137 NICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSATEFFFH 1958
            NICQM+ACVGQQSVGGRRAPNGFLDRTLPHFER AKDPDAKGFVQNSFYTGL  TEFFFH
Sbjct: 779  NICQMVACVGQQSVGGRRAPNGFLDRTLPHFERGAKDPDAKGFVQNSFYTGLLPTEFFFH 838

Query: 1957 TMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMYGGDGMDPA 1778
            TMGGREGLVDTAVKTADTGYMSRRL+KALEDLSV YD+TVRNASG IVQF YG DG+DPA
Sbjct: 839  TMGGREGLVDTAVKTADTGYMSRRLIKALEDLSVQYDSTVRNASGCIVQFTYGDDGLDPA 898

Query: 1777 QMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKSTTTREEGFA 1598
            QMEEK+G PLNFERLFMK KATCP+  Q S               +  S+S         
Sbjct: 899  QMEEKTGFPLNFERLFMKAKATCPSEGQPSLKAEDIDFIINRVIEENHSRSDI------- 951

Query: 1597 HNFASSSDTPSNKEGCLEAFQNSLRNFIMKK-YPSSILMLKSNERQHSEEDRSCLENVAS 1421
                      S  E C E F+ SL  F+ K+ YP+ +L  K N    S +D+S +++V S
Sbjct: 952  ----------SEMEKCSETFEASLLRFLNKRVYPTGMLSEKLNSENISLQDKSYVQSVVS 1001

Query: 1420 NISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASM 1241
            + SGIT+QQL VFL  C +RYH KK               GEPGTQMTLKTFHFAGVASM
Sbjct: 1002 STSGITQQQLEVFLNMCFARYHPKKIECGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 1240 NVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKSIKTSQ 1061
            NVTLGVPRI+EII+AAK+I TP+ITT LQ  +  I A++VKGRIEKTLL ++AKS+K S+
Sbjct: 1062 NVTLGVPRIREIIDAAKKIKTPVITTELQRKDCGITARIVKGRIEKTLLGEIAKSMKVSE 1121

Query: 1060 ASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEVILQAD 881
             +R ASIVI LD K I+ AQL +DAYTVKESIL TPKMKLKEQQ+RVLN +KL V L+A+
Sbjct: 1122 MTRTASIVIKLDTKVIEAAQLFIDAYTVKESILLTPKMKLKEQQIRVLNRQKLTVSLEAE 1181

Query: 880  RNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPTGNKRLKLLVEGTGLLSVMG 701
            R+KL+FE   L+NK+  VVVKGI  VERAII++EA  KDP   K+LKL+VEGTG LSV+G
Sbjct: 1182 RSKLEFESWALQNKLKDVVVKGIKQVERAIIVDEANGKDPNQRKKLKLVVEGTGFLSVLG 1241

Query: 700  IDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADLMTFK 521
            I GVD   T SNHI+EV Q LGIE+AR++IIDEIQYTMS HGMTIDIRHMMLLADLMTFK
Sbjct: 1242 IQGVDARNTKSNHIMEVFQVLGIESARRQIIDEIQYTMSGHGMTIDIRHMMLLADLMTFK 1301

Query: 520  GEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMGIPMQIGT 341
            GEVLGITR+GV+KM+DSVLMLASFE+TADHLFNA VNGRVDRIEGVSECI++GIPM+ GT
Sbjct: 1302 GEVLGITRYGVRKMRDSVLMLASFERTADHLFNAPVNGRVDRIEGVSECIMLGIPMRTGT 1361

Query: 340  GMLKVRQ 320
            GM+K++Q
Sbjct: 1362 GMMKIKQ 1368


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score = 1977 bits (5123), Expect = 0.0
 Identities = 1009/1413 (71%), Positives = 1151/1413 (81%), Gaps = 6/1413 (0%)
 Frame = -2

Query: 4495 MARAQAAIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDN 4316
            M R Q ++Q TKQPY EDVGPR+I+SI+FS FS +E+LK+ EVEV  G YY+ TKKPI N
Sbjct: 1    MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60

Query: 4315 GLLDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCS 4136
            GLLDP MGP NK G C+TC+G F ECPGH GYL LALPVYNVGYL T+VDI+KCICK CS
Sbjct: 61   GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 4135 RVLLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVK 3956
             +LL++KER+  L+KMRN +TE LKK+E+ K VVK+CNAMAG ++   CS+CGY+NGMVK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 3955 RAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTIDPKIAYQLLKNMLDEDCEL 3776
            +  L+I H++   +   LDE   AIS  +E R + +V   +DPK+ Y L KNM DEDCEL
Sbjct: 181  KLQLKITHEQGNRI---LDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDCEL 237

Query: 3775 LYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLET 3596
            LYL+DRPEKL+VT+I VPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASL QEM ++
Sbjct: 238  LYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDS 297

Query: 3595 NLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKR 3416
            +   +SL  W DLQMEVAQYINSDVRGVPL+M A RPLSGF QRLKGKQGRFRGNLSGKR
Sbjct: 298  S-PVKSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKR 356

Query: 3415 VEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKY 3236
            VEYTGRTVISPDPNLKI +VAIPILMA+ILTYPERVS HNIEKLRQCVRNGPNKYPGAK+
Sbjct: 357  VEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKF 416

Query: 3235 IRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM 3056
            IR PDG+ ISLM   RKRHADELK+GYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM
Sbjct: 417  IRHPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM 476

Query: 3055 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAS 2876
            PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK+GEILVAS
Sbjct: 477  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVAS 536

Query: 2875 TQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVL 2696
            TQDFLTSS+LITRKDTFY+R+SFSL+CSYMGDA DP DLP+PA +KP ELWTGKQLF +L
Sbjct: 537  TQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHML 596

Query: 2695 LRPHAKMRVYLNLTLAEKNYGKSKETMCPKDGFVYIRNSELISGQLGKATLGNGNKDGLY 2516
            LRP++KMRVY+NLT+ EK+Y    ETMCP DGFVY RNSELISGQLGKATLGNGNKDGLY
Sbjct: 597  LRPYSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLY 656

Query: 2515 SVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYGQC 2336
            SVLLRDY +HAAA CMNRLAKLSARWIGNHGFSIGI+DV PG  L K+K+  I + Y +C
Sbjct: 657  SVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKC 716

Query: 2335 TDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQCG 2156
             D I  +  G L + PGC+ A+TLEA++T +LN +R+    +CMK L+WRNSPLIMSQCG
Sbjct: 717  EDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCG 776

Query: 2155 SKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSA 1976
            SKGSPINI QMIACVGQQSVGGRRAP+GF+DR+LPHF  ++K P AKGFV +SF+ GLSA
Sbjct: 777  SKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSA 836

Query: 1975 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMYGG 1796
            TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDL+V+YD+TVRNAS  IVQFMYG 
Sbjct: 837  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGD 896

Query: 1795 DGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKSTTT 1616
            DGMDP+QMEEK G PLNF RLFMK KATCP   +KS               +RLS    T
Sbjct: 897  DGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKS----LSYSEICEIVNERLSYHDMT 952

Query: 1615 REEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSN----ERQHSEED 1448
             E                  GC EAF++SL +F++K    ++  L+ +    E Q+  +D
Sbjct: 953  PE-----------------GGCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDD 995

Query: 1447 RSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKT 1268
            R  LE +A NISGIT++QL VFL TCISRYH K+               GEPGTQMTLKT
Sbjct: 996  RGYLEKIALNISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKT 1055

Query: 1267 FHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQ 1088
            FHFAGVASMNVTLGVPRIKEIINAAK+I TPIITT L    N   A+++K RIEKTLL Q
Sbjct: 1056 FHFAGVASMNVTLGVPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQ 1115

Query: 1087 VAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPR 908
            VAKS+K   ASRLASI I+LDM+ IQ +QL +DAYTVK+SILQT K+KLKE Q++VLNPR
Sbjct: 1116 VAKSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPR 1175

Query: 907  KLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKE--KDPTGNKRLKLL 734
            KLEV  QA+++KL FELH LKNK+  VVVKGI +V+RA++  E ++  K+    +  +LL
Sbjct: 1176 KLEVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELL 1235

Query: 733  VEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRH 554
            VEGTGLL+VMGI+GVDG  T SNHI+EVQ TLGIEAAR  IIDEI YTMSSHGMTID+RH
Sbjct: 1236 VEGTGLLAVMGIEGVDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRH 1295

Query: 553  MMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSEC 374
            MMLLADLMT+KGEVLGITRHGVQKMKDSVLMLASFEKT DHLFNASVNGR D+IEGV+EC
Sbjct: 1296 MMLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTEC 1355

Query: 373  IIMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 275
            IIMGIPM IGTGM K+RQ V+ VELNY PDPII
Sbjct: 1356 IIMGIPMTIGTGMFKLRQRVEQVELNYQPDPII 1388


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score = 1965 bits (5091), Expect = 0.0
 Identities = 1004/1413 (71%), Positives = 1145/1413 (81%), Gaps = 6/1413 (0%)
 Frame = -2

Query: 4495 MARAQAAIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDN 4316
            M RAQ ++Q TKQPY EDVGPR+I+SI+FS FS +E+LK  EVEV  G YY+ TKKPI N
Sbjct: 1    MNRAQESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQN 60

Query: 4315 GLLDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCS 4136
            GLLDP MGP NK G C+TC+G F ECPGH GYL LALPVYNVGYL T+VDI+KCICK CS
Sbjct: 61   GLLDPRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 4135 RVLLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVK 3956
             +LL++KER+  L+KMRN +TE LKK+E+ K VVK+CNAMAG ++   CS+CGY+NGMVK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 3955 RAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTIDPKIAYQLLKNMLDEDCEL 3776
            +  L+I H++   +   LDE   AIS  +E R + +V   IDPK+ Y L KNM DEDCEL
Sbjct: 181  KLQLKITHEQGNRI---LDEINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDCEL 237

Query: 3775 LYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLET 3596
            LYL+DRPEKL+VT+I VPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASL QEM ++
Sbjct: 238  LYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDS 297

Query: 3595 NLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKR 3416
            +   +SL  W DLQMEVAQYINSDVRGVPL M   RPLSGF QRLKGKQGRFRGNLSGKR
Sbjct: 298  S-PVKSLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKR 356

Query: 3415 VEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKY 3236
            VEYTGRTVISPDPNLKI +VAIPILMA+ILTYPERVS HNIEKLRQCVRNGPNKYPGAK+
Sbjct: 357  VEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKF 416

Query: 3235 IRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM 3056
            IR PDG  +SLM + RKR+ADELK+GYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM
Sbjct: 417  IRHPDGNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM 476

Query: 3055 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAS 2876
            PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK+GEILVAS
Sbjct: 477  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVAS 536

Query: 2875 TQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVL 2696
            TQDFLTSS+LITRKDTFY+R+SFSL+CSYMGDA DP DLP+PA +KP ELWTGKQLF VL
Sbjct: 537  TQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHVL 596

Query: 2695 LRPHAKMRVYLNLTLAEKNYGKSKETMCPKDGFVYIRNSELISGQLGKATLGNGNKDGLY 2516
            LRP++KMRVY+NLTL EK+Y    ETMC  DGFVY RNSELISGQLGKATLGNGNKDGLY
Sbjct: 597  LRPYSKMRVYVNLTLTEKSYSGKGETMCSSDGFVYFRNSELISGQLGKATLGNGNKDGLY 656

Query: 2515 SVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYGQC 2336
            SVLLRDY +HAAA CMNRLAKLSARWIGNHGFSIGI+DV PG  L K+K+  I + Y +C
Sbjct: 657  SVLLRDYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKC 716

Query: 2335 TDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQCG 2156
             D I  +  G L + PGC+ A+TLEA++T +LN +R+    +CMK L+WRNSPLIMSQCG
Sbjct: 717  EDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCG 776

Query: 2155 SKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSA 1976
            SKGSPINI QMIACVGQQSVGGRRAP+GF+DR+LPHF  ++K P AKGFV +SF+ GLSA
Sbjct: 777  SKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSA 836

Query: 1975 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMYGG 1796
            TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDL+V+YD+TVRNAS  IVQFMYG 
Sbjct: 837  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGD 896

Query: 1795 DGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKSTTT 1616
            DGMDP++MEEK G PLNF RLFMK KATCP   +KS               +RLS    T
Sbjct: 897  DGMDPSRMEEKKGRPLNFSRLFMKVKATCPPGGEKS----LSYSEICEIVNERLSYHDMT 952

Query: 1615 REEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSN----ERQHSEED 1448
             E                  GC EAF+ SL +F++K    ++  L+ +    E Q+  +D
Sbjct: 953  PE-----------------GGCSEAFRASLSDFLIKSLAETLKNLRESLLLGEEQYEGDD 995

Query: 1447 RSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKT 1268
            R  LE +  NISGIT++QL VFL TCISRYH K+               GEPGTQMTLKT
Sbjct: 996  RGYLEKIVLNISGITKKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKT 1055

Query: 1267 FHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQ 1088
            FHFAGVASMNVTLGVPRIKEIINAAK+I TPIIT  L    N   A+++K RIEKTLL Q
Sbjct: 1056 FHFAGVASMNVTLGVPRIKEIINAAKKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQ 1115

Query: 1087 VAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPR 908
            VAKS+K   ASRLASI I+LDM+ IQ +QL +DAYTVK+SILQT K+KLKE Q++VLNPR
Sbjct: 1116 VAKSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPR 1175

Query: 907  KLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKE--KDPTGNKRLKLL 734
            KLEV  QA+++KL FELH LKNK+  VVVKGI +V+RA++  E ++  K+    +  +LL
Sbjct: 1176 KLEVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELL 1235

Query: 733  VEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRH 554
            VEGTGLL+VMGI+GVDG  T SNHI+EVQ TLGIEAAR  IIDEI YTMSSHGMTID+RH
Sbjct: 1236 VEGTGLLAVMGIEGVDGRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRH 1295

Query: 553  MMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSEC 374
            MMLLADLMT+KGEVLGITRHGVQKMKDSVLMLASFEKT DHLFNASVNGR D+IEGV+EC
Sbjct: 1296 MMLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTEC 1355

Query: 373  IIMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 275
            IIMGIPM IGTGM K+RQ V+ VELNY PDP++
Sbjct: 1356 IIMGIPMTIGTGMFKLRQRVEHVELNYQPDPMM 1388


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score = 1954 bits (5061), Expect = 0.0
 Identities = 1000/1408 (71%), Positives = 1144/1408 (81%), Gaps = 8/1408 (0%)
 Frame = -2

Query: 4474 IQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDNGLLDPHM 4295
            IQFTK+PY EDVGPR+IESI+F+ FS +E+ K  EV+V RG YYD  +KPI+NGLLDP M
Sbjct: 5    IQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRM 64

Query: 4294 GPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCSRVLLEEK 4115
            GPANK G C TC G F +CPGHCGYL LALPVYNVGYL+TIVDI+KCICK CSRVLL+EK
Sbjct: 65   GPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEK 124

Query: 4114 ERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVKRAP--LR 3941
              + +L+KMR+ K E LKK E++K +V+KC AMA SK+AVKCSRCGY+NG+VK+A   L 
Sbjct: 125  ASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLG 184

Query: 3940 IQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTIDPKIAYQLLKNMLDEDCELLYLND 3761
            I HDR+K+ D  L+EC SAISHTKE + + +V   ++P     L K M+DEDC+LL L +
Sbjct: 185  IIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAE 244

Query: 3760 RPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLETNLHNR 3581
            RPEKL++TNI VPPIAIRPSVF+DGGTQSNEND+TERLKRIIQANASL QE+ +T   ++
Sbjct: 245  RPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSK 304

Query: 3580 SLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 3401
             L  WD LQ+EVAQYINSDVRGVPL M AARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG
Sbjct: 305  CLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 364

Query: 3400 RTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKYIRQPD 3221
            RTVISPDPNLKI +VAIPILMA+IL+YPERVSHHNIEKLRQC+ NGP KYPGAK IR PD
Sbjct: 365  RTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPD 424

Query: 3220 GTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 3041
            G++ SLM + RKR ADELKYGYIV+RHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTL
Sbjct: 425  GSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 484

Query: 3040 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2861
            RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 485  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 544

Query: 2860 TSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVLLRPHA 2681
            TSS+LITRKDTFYDR++FSLMCSYMGD  D +DLPTPA++KP ELWTGKQLF+VLLRPHA
Sbjct: 545  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLRPHA 604

Query: 2680 KMRVYLNLTLAEKNYGK--SKETMCPKDGFVYIRNSELISGQLGKATLGNGNKDGLYSVL 2507
             +RVYLNLT+ EK Y K   KETMCP DGFVY RNSELISGQLGKATLGNGNKDGL+SVL
Sbjct: 605  NVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVL 664

Query: 2506 LRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYGQCTDY 2327
            LRDYN HAAAACMNRLAKLSARWIGNHGFSIGI+DVQPG  LN +K   I++ Y  C + 
Sbjct: 665  LRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHEL 724

Query: 2326 IESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQCGSKG 2147
            I+ Y  G L L PGCN A+TLEA+ITG LN IRETTANVCM+ L+WRNSPLIMSQCGSKG
Sbjct: 725  IQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKG 784

Query: 2146 SPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSATEF 1967
            SPINI QMIACVGQQSVGGRRAP+GF+DRTLPHF R++K PDAKGFV +SFYTGL+ATEF
Sbjct: 785  SPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEF 844

Query: 1966 FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMYGGDGM 1787
            FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLS+ YD TVRNA+G IVQF+YG DGM
Sbjct: 845  FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGM 904

Query: 1786 DPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKSTTTREE 1607
            DPA+ME K G PLNF RLF+K KATCPA E  S                ++ ++    +E
Sbjct: 905  DPARMEGKDGFPLNFNRLFLKVKATCPAGENAS------------LSALQIEETVKRLKE 952

Query: 1606 GFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEEDRSCL 1436
               HN        ++ EGC +AF+ +L  F+    +K+ ++   L  +     EE+    
Sbjct: 953  ---HN--------TSAEGCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQ 1001

Query: 1435 ENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFA 1256
            E  A NISGIT +QL VFL+TCISRY  K+               GEPGTQMTLKTFHFA
Sbjct: 1002 EKFAKNISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFA 1061

Query: 1255 GVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKS 1076
            GVASMNVTLGVPRIKEIIN AKRI+TPIIT  L+C+NN   A++VKGRIE+T L QVAKS
Sbjct: 1062 GVASMNVTLGVPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKS 1121

Query: 1075 IKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEV 896
            IK    SRLA I + LDM+ IQ +QLS+D+  V+ESIL+  ++KLK+Q ++VL+  KLEV
Sbjct: 1122 IKIVLTSRLALIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEV 1181

Query: 895  ILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPTGNKRLKLLVEGTGL 716
              Q DR+ + FELH LKN +  VVVKGI +VERA+I  + K K         LLVEGTGL
Sbjct: 1182 HPQGDRSTIHFELHALKNLLPTVVVKGIETVERAVINKDNKVK-------YNLLVEGTGL 1234

Query: 715  LSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLAD 536
             +VMG +GV G +TTSNHIIEVQQTLGIEAARK II+EIQYTM+SHGM+IDIRHMMLLAD
Sbjct: 1235 QTVMGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLAD 1294

Query: 535  LMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMGIP 356
            LMTF+GEVLGITR G+QKM  SVLMLASFEKTADHLFNASV+GR D+IEGVSECIIMGIP
Sbjct: 1295 LMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIP 1354

Query: 355  MQIGTGMLKVRQSVQPV-ELNYGPDPII 275
            MQ+GTG+LKVRQ +Q V EL+YG DPII
Sbjct: 1355 MQLGTGILKVRQRLQQVPELSYGLDPII 1382


>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
          Length = 1395

 Score = 1876 bits (4860), Expect = 0.0
 Identities = 973/1420 (68%), Positives = 1127/1420 (79%), Gaps = 21/1420 (1%)
 Frame = -2

Query: 4471 QFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDNGLLDPHMG 4292
            +FTK+PY EDVGPR+I+SIQFS  S +E+ K  EV+V +  YYD   +PI+ GLLDP MG
Sbjct: 4    KFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMG 63

Query: 4291 PANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCSRVLLEEKE 4112
            PANK G C TC+G FA+CPGH GYL+LALPVYNVGYL+TI+DI+KCICK CSR++L+EK 
Sbjct: 64   PANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKL 123

Query: 4111 RQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRI 3938
             + +L++MR+ K + LKK +I+K++VKKC+AMA SK AVKC RCGY+NG VK+A   L I
Sbjct: 124  CKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSK-AVKCWRCGYVNGTVKKAVAMLGI 182

Query: 3937 QHDRAKVVDNYLDECQSAISHTKEYRGNANVSS-TIDPKIAYQLLKNMLDEDCELLYLND 3761
             HDR+K+ DN L+E +SAISHTKE + + NV++  ++P     L K M D DCELLYL+D
Sbjct: 183  IHDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSD 242

Query: 3760 RPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLETNLHNR 3581
            RPEKLI+TNI VPPI IRPSV +DG +QSNENDITERLKRIIQANASLRQE++ETN   +
Sbjct: 243  RPEKLIITNIAVPPIPIRPSVIMDG-SQSNENDITERLKRIIQANASLRQELVETNAAFK 301

Query: 3580 SLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 3401
             L  W+ LQ+EVAQYINSDVRGVP  M  ++PLSGFVQR+KGK GRFRGNLSGKRVEYTG
Sbjct: 302  CLGGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTG 361

Query: 3400 RTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKYIRQPD 3221
            RTVISPDPNLKI +VAIPI MARILTYPERVS+HNIEKLRQCVRNGP+KYPGA+ +R PD
Sbjct: 362  RTVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPD 421

Query: 3220 GTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 3041
            G+   L+ + RKR ADELK+G +VDRHLEDGDIVLFNRQPSLHRMSIM HRARIMPWRTL
Sbjct: 422  GSARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTL 481

Query: 3040 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 2861
            RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 541

Query: 2860 TSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVLLRPHA 2681
            TSS+LITRKD FYDR++FSL+CSYMGD  D IDLPTPAL+KP ELWTGKQLFSVLLRPHA
Sbjct: 542  TSSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHA 601

Query: 2680 KMRVYLNLTLAEKNYGK-----------SKETMCPKDGFVYIRNSELISGQLGKATLGNG 2534
             +RVYLNL + E+NY K             ETMCP DGFVYIRNSELI GQLGKATLGNG
Sbjct: 602  SVRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNG 661

Query: 2533 NKDGLYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTID 2354
            NKDGLYSVLLRDYN HAAAACMNRLAKLSARWIGNHGFSIGI+DVQPG  LN EK +TI 
Sbjct: 662  NKDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTIS 721

Query: 2353 KEYGQCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPL 2174
             +Y +C + I+++  G L   PG + A+TLEA +T  LNNIR+ T  VCMK L+WRNSPL
Sbjct: 722  GDYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPL 781

Query: 2173 IMSQCGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSF 1994
            IMSQCGSKGS INI QMIACVGQQSVGGRRAPNGF+DR+LPHF R +K P AKGFV NSF
Sbjct: 782  IMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSF 841

Query: 1993 YTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIV 1814
            Y+GL+ATEFFFHTM GREGLVDTAVKTA+TGYMSRRL+KALEDLS+HYDNTVRNASG IV
Sbjct: 842  YSGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIV 901

Query: 1813 QFMYGGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRL 1634
            QF+YG DGMDPA ME KSG PLNF+RL MK KATCP IEQK                   
Sbjct: 902  QFIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVG-------------- 947

Query: 1633 SKSTTTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYP--SSILMLKSNERQH 1460
            S      E+   H+ A           C EAF+ SL+ F+  +      ++ L +N  Q 
Sbjct: 948  SIMQMLEEQLAKHDPAGV---------CSEAFKKSLKGFLKSQTNELDRVMKLVNNCAQK 998

Query: 1459 SEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQM 1280
            SE     LE V   ISGI+ +QL VF+ TCISRY SK                GEPGTQM
Sbjct: 999  SE----ILEKVGHKISGISDRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQM 1054

Query: 1279 TLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKT 1100
            TLKTFHFAGVASMN+T GVPRIKEIINAAKRI+TP+IT  L+ D+N  IA++VKGRIEKT
Sbjct: 1055 TLKTFHFAGVASMNITQGVPRIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKT 1114

Query: 1099 LLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRV 920
            +L QVAKSIK    SR AS+VITLDM+ I  A+L +DA  VKESILQTPK+KLKEQ V+V
Sbjct: 1115 VLGQVAKSIKIVITSRSASVVITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKV 1174

Query: 919  LNPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKE----KDPTGN 752
            L+ RKLEV+  ADR+++ FELH+LKN +  VVVKGI +VER ++ ++ KE    K+    
Sbjct: 1175 LDGRKLEVVPPADRSQIHFELHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETT 1234

Query: 751  KRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGM 572
            K  +LLVEGTGL +VMGI+G+DG +T SNH++E++Q LGIEAARK IIDEI  TM  HGM
Sbjct: 1235 KHFQLLVEGTGLQAVMGIEGIDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGM 1294

Query: 571  TIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRI 392
            TID RHMMLLAD+MTF+GEVLGITR G+QKM  S+LMLASFE+TADHLFNA+VNGR D+I
Sbjct: 1295 TIDRRHMMLLADVMTFRGEVLGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKI 1354

Query: 391  EGVSECIIMGIPMQIGTGMLKVRQSVQPVE-LNYGPDPII 275
            EGV+ECIIMGIPMQIGTG+LKV Q V P   L YGPDP++
Sbjct: 1355 EGVTECIIMGIPMQIGTGILKVIQRVDPPPMLRYGPDPVL 1394


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score = 1852 bits (4796), Expect = 0.0
 Identities = 964/1428 (67%), Positives = 1101/1428 (77%), Gaps = 20/1428 (1%)
 Frame = -2

Query: 4498 QMARAQAAIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPID 4319
            Q+ +   +I FTKQPY EDVGPR+IESIQFS  S +E++K  EV+V +G YY   + PI+
Sbjct: 4    QLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIE 63

Query: 4318 NGLLDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKC 4139
             GLLDP MGPANK   C TC+G F+ CPGH GYL LALPVYNVGYL+TI+DI+KCICK C
Sbjct: 64   GGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYC 123

Query: 4138 SRVLLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMV 3959
            SR+LLEEK  + +L+KMRN K E L+K +++K++VKKC+ MA   +AVKC RCGYINGMV
Sbjct: 124  SRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMAS--KAVKCPRCGYINGMV 181

Query: 3958 KRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTI-DPKIAYQLLKNMLDE 3788
            K+A   L I HDR+KV ++ L E  SAI+HTKE +   NV++ I +P     L K M D 
Sbjct: 182  KKAVAVLGIIHDRSKVTES-LQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDT 240

Query: 3787 DCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQE 3608
            DCE+LYL++RPEKLI+TNI VPPIAIRPSV +DG +QSNENDITERLKRIIQ NASL+QE
Sbjct: 241  DCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITERLKRIIQTNASLQQE 299

Query: 3607 MLETNLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNL 3428
            ++E N   +SL  W+ LQ+EVAQYINSDVRGVP  M  ARPLSGFVQRLKGKQGRFRGNL
Sbjct: 300  LVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNL 359

Query: 3427 SGKRVEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYP 3248
            SGKRVEYTGRTVISPDPNLKI +VAIPI MARILTYPERVS HNIEKLRQC++NGP+KYP
Sbjct: 360  SGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYP 419

Query: 3247 GAKYIRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHR 3068
            GA+ IR PDGT   L    R + A ELK G IVDRHLEDGD+VLFNRQPSLHRMSIM HR
Sbjct: 420  GARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHR 479

Query: 3067 ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEI 2888
            ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL+LMGVQNNLCTPKNGEI
Sbjct: 480  ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEI 539

Query: 2887 LVASTQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQL 2708
            LVASTQDFLTSS+LITRKDTFYDR++FSLMC YMGD  D +DLPTPA++KP ELWTGKQL
Sbjct: 540  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQL 599

Query: 2707 FSVLLRPHAKMRVYLNLTLAEKNYGKSK-----------ETMCPKDGFVYIRNSELISGQ 2561
            FSVL+RPHA MRVY+NLT+ EK Y               ETMCP DGFVY RNSELISGQ
Sbjct: 600  FSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQ 659

Query: 2560 LGKATLGNGNKDGLYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVEL 2381
            LGKATLGNGNKDGLYSVLLRDY  HA + CMNRLAKLSARWIGNHGFSIGI+DVQP  EL
Sbjct: 660  LGKATLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKEL 719

Query: 2380 NKEKKVTIDKEYGQCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMK 2201
            + +K   I + Y  C   I+ Y  G L L PGC+ A+TLEA IT  LN IRE     CM 
Sbjct: 720  SDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMG 779

Query: 2200 NLNWRNSPLIMSQCGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPD 2021
            +L WRNSPLIMSQCGSKGSPINI QM+ACVGQQSVGGRRAPNGF+DR+LPHF R+AK+P 
Sbjct: 780  SLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPA 839

Query: 2020 AKGFVQNSFYTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNT 1841
            AKGFV NSFY+GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLS+ YDN+
Sbjct: 840  AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNS 899

Query: 1840 VRNASGFIVQFMYGGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXX 1661
            VRNA G IVQF+YG DGMDPA ME KSG PLNF+RL MK KATCP   Q+          
Sbjct: 900  VRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQR---------- 949

Query: 1660 XXXXXXKRLSKSTTTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILML 1481
                    LS    +                  KE C EAF NSLR F   +       +
Sbjct: 950  -------YLSPQQVS-------EIVEKQLAAYGKESCSEAFLNSLRKFFEGQQDKLDKKI 995

Query: 1480 KSNERQHSEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXX 1301
            K  E    ++    LE V    SGIT +QL VF++TC SRYH K+               
Sbjct: 996  KFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSI 1055

Query: 1300 GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLV 1121
            GEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN AKRI+TPIIT  L+C++NE  A++V
Sbjct: 1056 GEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVV 1115

Query: 1120 KGRIEKTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKL 941
            KGRIEKTLL QVAKSIK    SRLASIVI LDM+ IQ A L ++A  VKESI+QTPK+KL
Sbjct: 1116 KGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKL 1175

Query: 940  KEQQVRVLNPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKE--- 770
            K+Q ++VL+ RKLE+    D++K+ FEL++LKN +  V+VKGI +VER +I  + KE   
Sbjct: 1176 KQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRK 1235

Query: 769  -KDPTGNKRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQY 593
             K+    K+ +LLVEGTGL +VMG +G+DGCKT SNHI EVQQTLGIEAAR  IIDEI  
Sbjct: 1236 VKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINE 1295

Query: 592  TMSSHGMTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASV 413
            TM +HGM+ID RHMMLLADLMTF+GEVLGITR G+QKM  SVLMLASFEKTADHLFNASV
Sbjct: 1296 TMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV 1355

Query: 412  NGRVDRIEGVSECIIMGIPMQIGTGMLKVRQ-SVQPVELNYG-PDPII 275
            NGR DRIEGVSECIIMGIPM +GTG+LK+RQ    P  L YG PDPI+
Sbjct: 1356 NGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1403


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score = 1821 bits (4717), Expect = 0.0
 Identities = 956/1432 (66%), Positives = 1113/1432 (77%), Gaps = 25/1432 (1%)
 Frame = -2

Query: 4495 MARAQA-AIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPID 4319
            M RAQ   + FTKQPY EDVGPR+I+S+QF+TFSG E+ K  EV+V +G YYD T+KPID
Sbjct: 1    MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 4318 NGLLDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKC 4139
             GLLDP MGPANK   C TC+  F +CPGH GY+ LALPV+NVGY  TI++I+KCICK C
Sbjct: 61   GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 4138 SRVLLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMV 3959
            SR+LLEEK  + FL+KMRN K E L+K +++K ++KKC+ +    ++ +CSRCGY+NG V
Sbjct: 121  SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSV 180

Query: 3958 KRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTI-DPKIAYQLLKNMLDE 3788
            K+A   L I H RA+  D        A   +++ R   NVS+ I +P     L + M DE
Sbjct: 181  KKAVSMLGILHYRARSKD--------AGVVSEDLRAPYNVSNDILNPFRVLCLFQRMSDE 232

Query: 3787 DCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQE 3608
            DCELL+L++RPEKLI+TN+LVPPIAIRPSV +DG +QSNENDITERLKRIIQ NAS+ QE
Sbjct: 233  DCELLFLSNRPEKLIITNVLVPPIAIRPSVIMDG-SQSNENDITERLKRIIQQNASVSQE 291

Query: 3607 MLETNLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNL 3428
            +  +N   + L SWD LQ EVAQ INSDVRG+P  M  ++PL+GFVQRLKGKQGRFRGNL
Sbjct: 292  LSTSNSQAKCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNL 351

Query: 3427 SGKRVEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYP 3248
             GKRVE+TGRTVISPDPNLKI +VA+PI MARILTYPERV+ HNIEKLRQCV NGP+KYP
Sbjct: 352  CGKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYP 411

Query: 3247 GAKYIRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHR 3068
            GA+ +R  DG++ SLM + RKR ADELKYG IV+RHLEDGD+VLFNRQPSLHRMSIM HR
Sbjct: 412  GARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHR 471

Query: 3067 ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEI 2888
             R+MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPKNGEI
Sbjct: 472  VRVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEI 531

Query: 2887 LVASTQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQL 2708
            LVASTQDFLTSS+LITRKDTFYDR++FSLMCSYMGD  D +DLPTPALVKP ELWTGKQL
Sbjct: 532  LVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQL 591

Query: 2707 FSVLLRPHAKMRVYLNLTLAEKNYGKSK------ETMCPKDGFVYIRNSELISGQLGKAT 2546
            FSVL+RPHA M+VYLNLT+ EK+Y K K      ETMCP DGFVY RNSELISGQ+GKAT
Sbjct: 592  FSVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKAT 651

Query: 2545 LGNGNKDGLYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKK 2366
            LGNGNKDGLYSVLLRDY  HAAA CMNRLAKLSARWIGNHGFSIGI+DVQPG +L K+K+
Sbjct: 652  LGNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQ 711

Query: 2365 VTIDKEYGQCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWR 2186
             TI + Y  C   I  + +G+L    GC+ A++LE+KIT  LN IRE TANVCM+NL+WR
Sbjct: 712  TTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWR 771

Query: 2185 NSPLIMSQCGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFV 2006
            NSPLIMSQCGSKGSPINI QM+ACVGQQSVGGRRAP+GF+DR+LPHF R+AK P AKGFV
Sbjct: 772  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFV 831

Query: 2005 QNSFYTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNAS 1826
             NSFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLS+HYD++VRNA 
Sbjct: 832  ANSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAG 891

Query: 1825 GFIVQFMYGGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXX 1646
            G IVQF YG DGMDPAQME KSG PLNFERLF+K KATCP+   K               
Sbjct: 892  GCIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSP----------- 940

Query: 1645 XKRLSKSTTTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMK----KYPSSILMLK 1478
                S+ + T E+        S D  S + GC  AF  SL+ F+ K    +  S   +L 
Sbjct: 941  ----SEFSETVEDRL------SKDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLA 990

Query: 1477 SNER-------QHSEEDRSCLEN-VASNISGITRQQLIVFLETCISRYHSKKXXXXXXXX 1322
             NE          S+ D   + N V  NI+G+T +QL VFL+TC+SRYH+KK        
Sbjct: 991  DNESAVDKSIISSSDNDNIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIG 1050

Query: 1321 XXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNN 1142
                   GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN AKRI+TPI+T  L  D+N
Sbjct: 1051 AIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDN 1110

Query: 1141 EIIAKLVKGRIEKTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESIL 962
              IA++VK RIEKT L Q+AK I+   +SR A I I LDM++I+ A+L VDA  VK++IL
Sbjct: 1111 VNIARMVKARIEKTNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAIL 1170

Query: 961  QTPKMKLKEQQVRVLNPRKLEVILQ-ADRNKLQFELHTLKNKISKVVVKGINSVERAIII 785
             TPK+KLK + + VL+ RKL V+ Q ADRNKL F LH LKN +  VVVKGI +V RA+I 
Sbjct: 1171 VTPKLKLKHEHINVLDDRKLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVI- 1229

Query: 784  NEAKEKDPTGN-KRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKII 608
               +EKD   N K+  LLVEGTGL +VMG +GVDGC T SNHIIEVQQ LGIEAARK II
Sbjct: 1230 --KEEKDKARNAKKFSLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCII 1287

Query: 607  DEIQYTMSSHGMTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHL 428
            +EI+YTM SHGM+IDIRHMMLL DLMTF+GEVLGITR G+QKM  SVLMLASFEKTADHL
Sbjct: 1288 EEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHL 1347

Query: 427  FNASVNGRVDRIEGVSECIIMGIPMQIGTGMLKVRQSVQ-PVELNYGPDPII 275
            FNASVNGR D+IEGVSEC+IMGIPM +GTGMLKVRQ V  P +L YGP  I+
Sbjct: 1348 FNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRVSVPQQLPYGPPAIL 1399


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score = 1793 bits (4644), Expect = 0.0
 Identities = 947/1443 (65%), Positives = 1083/1443 (75%), Gaps = 35/1443 (2%)
 Frame = -2

Query: 4498 QMARAQAAIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPID 4319
            Q+ +   +I FTKQPY EDVGPR+IESIQFS  S +E++K  EV+V +G YY   + PI+
Sbjct: 4    QLQQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIE 63

Query: 4318 NGLLDPHM---------------GPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGY 4184
             GLLDP M               GPANK   C TC+G F+ CPGH GYL LALPVYNVGY
Sbjct: 64   GGLLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGY 123

Query: 4183 LNTIVDIMKCICKKCSRVLLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSK 4004
            L+TI+DI+KCICK CSR+LLEEK  + +L+KMRN K E L+K +++K++VKKC+ MA   
Sbjct: 124  LSTILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMAS-- 181

Query: 4003 RAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTI- 3833
            +AVKC RCGYINGMVK+A   L I HDR+KV ++ L E  SAI+HTKE +   NV++ I 
Sbjct: 182  KAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTES-LQEFASAITHTKESKAAVNVATYIL 240

Query: 3832 DPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITE 3653
            +P     L K M D DCE+LYL++RPEKLI+TNI VPPIAIRPSV +DG +QSNENDITE
Sbjct: 241  NPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDG-SQSNENDITE 299

Query: 3652 RLKRIIQANASLRQEMLETNLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGF 3473
            RLKRIIQ NASL+QE++E N   +SL  W+ LQ+EVAQYINSDVRGVP  M  ARPLSGF
Sbjct: 300  RLKRIIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGF 359

Query: 3472 VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNI 3293
            VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKI +VAIPI MARILTYPERVS HNI
Sbjct: 360  VQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNI 419

Query: 3292 EKLRQCVRNGPNKYPGAKYIRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLF 3113
            EKLRQC++NGP+KYPGA+ IR PDGT   L    R + A ELK G IVDRHLEDGD+VLF
Sbjct: 420  EKLRQCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLF 479

Query: 3112 NRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALML 2933
            NRQPSLHRMSIM HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL+L
Sbjct: 480  NRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLL 539

Query: 2932 MGVQNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPT 2753
            MGVQNNLCTPKNGEILVASTQDFLTSS+LITRKDTFYDR++FSLMC YMGD  D +DLPT
Sbjct: 540  MGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPT 599

Query: 2752 PALVKPQELWTGKQLFSVLLRPHAKMRVYLNLTLAEKNYGKSK-----------ETMCPK 2606
            PA++KP ELWTGKQLFSVL+RPHA MRVY+NLT+ EK Y               ETMCP 
Sbjct: 600  PAILKPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPN 659

Query: 2605 DGFVYIRNSELISGQLGKATLGNGNKDGLYSVLLRDYNTHAAAACMNRLAKLSARWIGNH 2426
            DGFVY RNSELISGQLGKATLG                      CMNRLAKLSARWIGNH
Sbjct: 660  DGFVYFRNSELISGQLGKATLG----------------------CMNRLAKLSARWIGNH 697

Query: 2425 GFSIGINDVQPGVELNKEKKVTIDKEYGQCTDYIESYKSGSLDLLPGCNNAETLEAKITG 2246
            GFSIGI+DVQP  EL+ +K   I + Y  C   I+ Y  G L L PGC+ A+TLEA IT 
Sbjct: 698  GFSIGIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITD 757

Query: 2245 TLNNIRETTANVCMKNLNWRNSPLIMSQCGSKGSPINICQMIACVGQQSVGGRRAPNGFL 2066
             LN IRE     CM +L WRNSPLIMSQCGSKGSPINI QM+ACVGQQSVGGRRAPNGF+
Sbjct: 758  ILNRIREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFI 817

Query: 2065 DRTLPHFEREAKDPDAKGFVQNSFYTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 1886
            DR+LPHF R+AK+P AKGFV NSFY+GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR
Sbjct: 818  DRSLPHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRR 877

Query: 1885 LMKALEDLSVHYDNTVRNASGFIVQFMYGGDGMDPAQMEEKSGLPLNFERLFMKTKATCP 1706
            L+KALEDLS+ YDN+VRNA G IVQF+YG DGMDPA ME KSG PLNF+RL MK KATCP
Sbjct: 878  LIKALEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCP 937

Query: 1705 AIEQKSXXXXXXXXXXXXXXXKRLSKSTTTREEGFAHNFASSSDTPSNKEGCLEAFQNSL 1526
               Q+                  LS    +                  KE C EAF NSL
Sbjct: 938  PAGQR-----------------YLSPQQVS-------EIVEKQLAAYGKESCSEAFLNSL 973

Query: 1525 RNFIMKKYPSSILMLKSNERQHSEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKK 1346
            R F   +       +K  E    ++    LE V    SGIT +QL VF++TC SRYH K+
Sbjct: 974  RKFFEGQQDKLDKKIKFVEDIGWDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKR 1033

Query: 1345 XXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIIT 1166
                           GEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN AKRI+TPIIT
Sbjct: 1034 VEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIIT 1093

Query: 1165 TTLQCDNNEIIAKLVKGRIEKTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDA 986
              L+C++NE  A++VKGRIEKTLL QVAKSIK    SRLASIVI LDM+ IQ A L ++A
Sbjct: 1094 AELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINA 1153

Query: 985  YTVKESILQTPKMKLKEQQVRVLNPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINS 806
              VKESI+QTPK+KLK+Q ++VL+ RKLE+    D++K+ FEL++LKN +  V+VKGI +
Sbjct: 1154 DIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKT 1213

Query: 805  VERAIIINEAKE----KDPTGNKRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTL 638
            VER +I  + KE    K+    K+ +LLVEGTGL +VMG +G+DGCKT SNHI EVQQTL
Sbjct: 1214 VERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTL 1273

Query: 637  GIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLML 458
            GIEAAR  IIDEI  TM +HGM+ID RHMMLLADLMTF+GEVLGITR G+QKM  SVLML
Sbjct: 1274 GIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLML 1333

Query: 457  ASFEKTADHLFNASVNGRVDRIEGVSECIIMGIPMQIGTGMLKVRQ-SVQPVELNYG-PD 284
            ASFEKTADHLFNASVNGR DRIEGVSECIIMGIPM +GTG+LK+RQ    P  L YG PD
Sbjct: 1334 ASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPD 1393

Query: 283  PII 275
            PI+
Sbjct: 1394 PIM 1396


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score = 1761 bits (4561), Expect = 0.0
 Identities = 920/1415 (65%), Positives = 1080/1415 (76%), Gaps = 25/1415 (1%)
 Frame = -2

Query: 4489 RAQAAIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDNGL 4310
            RAQ  I +TKQPY EDVGPRRI+SIQFST SG+++LK  E +V  G YYD  KK I  GL
Sbjct: 4    RAQDII-YTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGL 62

Query: 4309 LDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCSRV 4130
            LD  MG  NK G C+TC G F +CPGH GYL L LPVYNVGYL+TI+DI+KCICK CSRV
Sbjct: 63   LDTRMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRV 122

Query: 4129 LLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVKRA 3950
            L++EK R+++L++MRN +TEPLKKNE++K +VKKC++MA SK AVKC RCGY+NGMVK+A
Sbjct: 123  LVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSK-AVKCLRCGYMNGMVKKA 181

Query: 3949 P--LRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTI-DPKIAYQLLKNMLDEDCE 3779
               + I HDR+K++D YL+EC+SAI HT+E R    +++ I +P     L + M++EDCE
Sbjct: 182  GSVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCE 241

Query: 3778 LLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLE 3599
            LLYL  RPEKLI+T I VPPI+IRPSVF +G +QSNENDITERLK+IIQ NA LR E+LE
Sbjct: 242  LLYLQGRPEKLIITTIAVPPISIRPSVFTEG-SQSNENDITERLKQIIQFNAKLRLELLE 300

Query: 3598 TNLHN-RSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSG 3422
                  + L  WD+LQ  V  YINSDVR +PL M   RPLSGFVQRL GKQGRFR NL+G
Sbjct: 301  GRRTGIKYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAG 359

Query: 3421 KRVEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGA 3242
            KRVE+TGRTVISPDPNLKI +VAIPI MARILTYPERV+HHNIEKLRQCV NG  KYPGA
Sbjct: 360  KRVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGA 419

Query: 3241 KYIRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 3062
            + +  PDG+   L  N RKR A+ELK G IV RHLEDGD+VLFNRQPSLHRMSIM HRAR
Sbjct: 420  RMVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRAR 479

Query: 3061 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILV 2882
            IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA +LMGVQNNLCTPKNGEILV
Sbjct: 480  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILV 539

Query: 2881 ASTQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFS 2702
            ASTQDFLTSS+LITRKDTFYDR++FSLMCSYM D  D +DLPTP+++KP ELWTGKQLFS
Sbjct: 540  ASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFS 599

Query: 2701 VLLRPHAKMRVYLNLTLAEKNYG-------KSKETMCPKDGFVYIRNSELISGQLGKATL 2543
            VLLRPHA +RVY+NL L EKNY        K +ETMCP DG+VY RNSELISGQLGKATL
Sbjct: 600  VLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATL 659

Query: 2542 GNGNKDGLYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKV 2363
            GNGNKDGLYS+LLRDYN +AAA CMNRLAKLSARWIGNHGFSIGI+DVQPG +L  EK  
Sbjct: 660  GNGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGK 719

Query: 2362 TIDKEYGQCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRN 2183
            TI   Y  C   I  Y  G L L  GC+  +TLE +IT  LN +RE   +VCMK L+WRN
Sbjct: 720  TISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKELHWRN 779

Query: 2182 SPLIMSQCGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQ 2003
            SPLIMSQCGSKGSPINI QMIACVGQQSVGG RAP+GF+DR+LPHF R++K P AKGFV 
Sbjct: 780  SPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVA 839

Query: 2002 NSFYTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASG 1823
            NSFY+GLSATEFFFHTMGGREGLVDTAVKTADTGYM+RRL K LEDL V YDNTV++A G
Sbjct: 840  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGG 899

Query: 1822 FIVQFMYGGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXX 1643
             IVQF+YG DG+DPA ME K+G+PLNF+RLFMK KATC A E +                
Sbjct: 900  GIVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDE---------YLSPSDI 950

Query: 1642 KRLSKSTTTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSN 1472
              + +S   +  G                 C E+F+ SL +F+    K+    + ++   
Sbjct: 951  SNIVQSLLLKHNGTLDGI------------CSESFRKSLSSFLGDQAKRLECLMKLVDGV 998

Query: 1471 ERQHSEEDRSC---------LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXX 1319
            E ++ E  ++           E +A  +SGIT +QL VFL+TC+ RY  K+         
Sbjct: 999  EVENFENIKNVEGLTGISKNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGA 1058

Query: 1318 XXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNE 1139
                  GEPGTQMTLKTFHFAGVASMN+T GVPRIKEIIN AKRI+TPIIT  L+ ++N 
Sbjct: 1059 IGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITVELEHNSNV 1118

Query: 1138 IIAKLVKGRIEKTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQ 959
              A+++KGRI+KT+L QVAKSIK    SR AS+ +TLDMK I+ AQLS+DA  V+E IL+
Sbjct: 1119 NAARIIKGRIQKTVLGQVAKSIKIVMTSRSASVKVTLDMKTIREAQLSLDANIVRELILE 1178

Query: 958  TPKMKLKEQQVRVLNPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINE 779
            TPK+K K Q++ VL   KLEV    DRNKL FELH+LKN +  VVVKGI +VER +I  +
Sbjct: 1179 TPKIKRKLQRINVLEDGKLEVFPGGDRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQK 1238

Query: 778  AKE--KDPTGNKRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIID 605
              +  ++  G  +  + VEG GL +VMG +GVDG KT SNHIIEVQ+TLGIEAARK IID
Sbjct: 1239 KLDDAENDQGGPKYNMFVEGMGLQAVMGTEGVDGRKTKSNHIIEVQETLGIEAARKCIID 1298

Query: 604  EIQYTMSSHGMTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLF 425
            EI+ TM SHGM+IDIRHMMLLAD+MT +G VLGITR G+QKM  SVLMLASFEKT+DHLF
Sbjct: 1299 EIKGTMESHGMSIDIRHMMLLADVMTSRGVVLGITRFGIQKMDKSVLMLASFEKTSDHLF 1358

Query: 424  NASVNGRVDRIEGVSECIIMGIPMQIGTGMLKVRQ 320
            NASV G+ D+IEGVSECIIMGIP+ IGTG+LK++Q
Sbjct: 1359 NASVKGKDDKIEGVSECIIMGIPVAIGTGVLKIQQ 1393


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max]
          Length = 1391

 Score = 1742 bits (4512), Expect = 0.0
 Identities = 907/1423 (63%), Positives = 1073/1423 (75%), Gaps = 16/1423 (1%)
 Frame = -2

Query: 4495 MARAQA-AIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPID 4319
            M RA+   I FTK+P+ ED GPR+I++++FST S +E+ K  EV+V +G YYD  KKPI 
Sbjct: 1    MNRARTEGITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIH 60

Query: 4318 NGLLDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKC 4139
             GLLDP MGPANK   C TC G F +CPGH GYL LALPV+NVGYL+TIV+I+KCICK C
Sbjct: 61   GGLLDPRMGPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGC 120

Query: 4138 SRVLLEEKERQTFLQKMRNTKTEPLKKNEILK-NVVKKCNAMAGSKRAVKCSRCGYINGM 3962
            +R+LL+E  R+  L+KMR++K   L K + +K  V+K C+      + V C RCGYING 
Sbjct: 121  ARILLDEDTRKKHLKKMRSSKKSELDKIDFVKVRVIKDCS------KVVNCPRCGYINGS 174

Query: 3961 VKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTI-DPKIAYQLLKNMLD 3791
            VK+ P  L I HD +K  +  ++E  SA+S  K+ R   NVS+ I +P     L K MLD
Sbjct: 175  VKKLPASLTIIHDCSKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLD 234

Query: 3790 EDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQ 3611
            EDCELLY+ +RPEKLI+TN++VPPIAIRPSV +D    SNENDITERLK IIQANA LRQ
Sbjct: 235  EDCELLYVAERPEKLIMTNVVVPPIAIRPSVVMDESL-SNENDITERLKNIIQANAVLRQ 293

Query: 3610 EMLETNLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGN 3431
            E+ E+   ++ L  WD LQ EVAQ+INSDVRG+P YM   + L+GFVQRLKGK GRFRGN
Sbjct: 294  ELQESTFSSKFLDGWDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGN 353

Query: 3430 LSGKRVEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKY 3251
            LSGKRVEYTGRTVISPDPNLKI++VAIPI MARILTYPERV+HHNIEKLRQCVRNGP+KY
Sbjct: 354  LSGKRVEYTGRTVISPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKY 413

Query: 3250 PGAKYIRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSH 3071
            PGA+ +R+  G   SL    RKR ADEL+ G IVDRHLEDGDIVLFNRQPSLHRMSIM H
Sbjct: 414  PGARMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCH 473

Query: 3070 RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGE 2891
            RARIMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGV+NNLCTPKNGE
Sbjct: 474  RARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGE 533

Query: 2890 ILVASTQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQ 2711
            ILVASTQDFLTSS+LITRKDTFYDRS+FSL+CSY+GD  DPIDLPTPA+VKP ELW+GKQ
Sbjct: 534  ILVASTQDFLTSSFLITRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQ 593

Query: 2710 LFSVLLRPHAKMRVYLNLTLAEKNYGKSK---------ETMCPKDGFVYIRNSELISGQL 2558
            LFS++LRPHA MRVY+NLT+ E+NY + K         +T+CP DGFVY RNSELISGQ+
Sbjct: 594  LFSIILRPHANMRVYVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQV 653

Query: 2557 GKATLGNGNKDGLYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELN 2378
            GK TLGNGNKDGL+SVLLRDY  HAAA+CMNRLAKLSARWIGNHGFSIGI+DVQP   L 
Sbjct: 654  GKVTLGNGNKDGLFSVLLRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILI 713

Query: 2377 KEKKVTIDKEYGQCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKN 2198
             +K  TI + Y +C  +IE++  G L+LL GC+ A+TLE +ITG LN +R+T   VCM+ 
Sbjct: 714  NKKDETISEGYRECDKHIEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCMQT 773

Query: 2197 LNWRNSPLIMSQCGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDA 2018
            L+WRNSPLIMSQCGSKGS INI QM+ACVGQQSVGGRR PNGF+DR+LPHF R++K P A
Sbjct: 774  LHWRNSPLIMSQCGSKGSSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTPAA 833

Query: 2017 KGFVQNSFYTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTV 1838
            KGFV NSFY+GLSATEFFFHTMGGREGLVDTAVKTADTGYMSR+LMK+LEDL +HYD TV
Sbjct: 834  KGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTV 893

Query: 1837 RNASGFIVQFMYGGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXX 1658
            RNA G IVQF YG DGMDPA ME K+G PLNFERLF+K+KA CP  E             
Sbjct: 894  RNAGGSIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKV 953

Query: 1657 XXXXXKRLSKSTTTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLK 1478
                      S    +  F   F++              F  SL++FI           K
Sbjct: 954  VHEKLSEFDMSRLAEKGVFEVGFSAD-------------FVESLQSFIKDN-------AK 993

Query: 1477 SNERQHSEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXG 1298
              E   ++E    L+     ISGITR+QL VFL  C+SRYHSKK               G
Sbjct: 994  LTEEGFTDEHSQNLKKFGQRISGITRKQLDVFLNICLSRYHSKKMEAGAPVGATGAHSIG 1053

Query: 1297 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVK 1118
            EPGTQMTLKTFHFAGVASMNVTLGVPR+KEI+N  K+I+TPIIT  L+ D+N   A++VK
Sbjct: 1054 EPGTQMTLKTFHFAGVASMNVTLGVPRVKEIMNGNKKISTPIITAILERDDNANTARIVK 1113

Query: 1117 GRIEKTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLK 938
            GRIEKT L QVAKSIK    SR AS+VITLDMKRIQ A L++DA  VKESIL+T K KLK
Sbjct: 1114 GRIEKTNLGQVAKSIKVVMTSRSASVVITLDMKRIQDAHLNIDANIVKESILRTKKTKLK 1173

Query: 937  EQQVRVLNPRKLEVILQ-ADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDP 761
             + +++L+ +KLEV+ Q  DR+K+ F+LH LKN +  VVVKGI +V+R +I  + K    
Sbjct: 1174 PEHIKILDIKKLEVVPQDVDRSKIHFQLHYLKNLLPTVVVKGIKTVDRVVISKDTKA--- 1230

Query: 760  TGNKRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTM-S 584
               ++ +LLVEGTG   VMG++G+DG KT SNHI EV+ TLGIEAAR+ I+ EI+YTM  
Sbjct: 1231 ---EKFRLLVEGTGFREVMGVEGIDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVD 1287

Query: 583  SHGMTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGR 404
            +HGM IDIRHMMLLAD+MT  G +LGI R G+ KM  SVLMLASFE+TAD LF ASV GR
Sbjct: 1288 THGMNIDIRHMMLLADMMTATGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGR 1347

Query: 403  VDRIEGVSECIIMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 275
             D I GVSE IIMGIP+QIGTGM+KV+Q + P EL +G  PI+
Sbjct: 1348 DDSIGGVSESIIMGIPIQIGTGMIKVKQRLDPPELPHGTSPIL 1390


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score = 1729 bits (4479), Expect = 0.0
 Identities = 882/1263 (69%), Positives = 1015/1263 (80%), Gaps = 6/1263 (0%)
 Frame = -2

Query: 4495 MARAQAAIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDN 4316
            M R Q ++Q TKQPY EDVGPR+I+SI+FS FS +E+LK+ EVEV  G YY+ TKKPI N
Sbjct: 1    MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60

Query: 4315 GLLDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCS 4136
            GLLDP MGP NK G C+TC+G F ECPGH GYL LALPVYNVGYL T+VDI+KCICK CS
Sbjct: 61   GLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCS 120

Query: 4135 RVLLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVK 3956
             +LL++KER+  L+KMRN +TE LKK+E+ K VVK+CNAMAG ++   CS+CGY+NGMVK
Sbjct: 121  SILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVK 180

Query: 3955 RAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTIDPKIAYQLLKNMLDEDCEL 3776
            +  L+I H++   +   LDE   AIS  +E R + +V   +DPK+ Y L KNM DEDCEL
Sbjct: 181  KLQLKITHEQGNRI---LDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDCEL 237

Query: 3775 LYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLET 3596
            LYL+DRPEKL+VT+I VPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASL QEM ++
Sbjct: 238  LYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDS 297

Query: 3595 NLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKR 3416
            +   +SL  W DLQMEVAQYINSDVRGVPL+M A RPLSGF QRLKGKQGRFRGNLSGKR
Sbjct: 298  S-PVKSLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKR 356

Query: 3415 VEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKY 3236
            VEYTGRTVISPDPNLKI +VAIPILMA+ILTYPERVS HNIEKLRQCVRNGPNKYPGAK+
Sbjct: 357  VEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKF 416

Query: 3235 IRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM 3056
            IR PDG+ ISLM   RKRHADELK+GYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM
Sbjct: 417  IRHPDGSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM 476

Query: 3055 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAS 2876
            PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK+GEILVAS
Sbjct: 477  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVAS 536

Query: 2875 TQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVL 2696
            TQDFLTSS+LITRKDTFY+R+SFSL+CSYMGDA DP DLP+PA +KP ELWTGKQLF +L
Sbjct: 537  TQDFLTSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHML 596

Query: 2695 LRPHAKMRVYLNLTLAEKNYGKSKETMCPKDGFVYIRNSELISGQLGKATLGNGNKDGLY 2516
            LRP++KMRVY+NLT+ EK+Y    ETMCP DGFVY RNSELISGQLGKATLGNGNKDGLY
Sbjct: 597  LRPYSKMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLY 656

Query: 2515 SVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYGQC 2336
            SVLLRDY +HAAA CMNRLAKLSARWIGNHGFSIGI+DV PG  L K+K+  I + Y +C
Sbjct: 657  SVLLRDYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKC 716

Query: 2335 TDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQCG 2156
             D I  +  G L + PGC+ A+TLEA++T +LN +R+    +CMK L+WRNSPLIMSQCG
Sbjct: 717  EDCITQFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCG 776

Query: 2155 SKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSA 1976
            SKGSPINI QMIACVGQQSVGGRRAP+GF+DR+LPHF  ++K P AKGFV +SF+ GLSA
Sbjct: 777  SKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSA 836

Query: 1975 TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMYGG 1796
            TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDL+V+YD+TVRNAS  IVQFMYG 
Sbjct: 837  TEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGD 896

Query: 1795 DGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKSTTT 1616
            DGMDP+QMEEK G PLNF RLFMK KATCP   +KS               +RLS    T
Sbjct: 897  DGMDPSQMEEKKGRPLNFSRLFMKVKATCPPGGEKS----LSYSEICEIVNERLSYHDMT 952

Query: 1615 REEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSN----ERQHSEED 1448
             E                  GC EAF++SL +F++K    ++  L+ +    E Q+  +D
Sbjct: 953  PE-----------------GGCSEAFRSSLSDFLIKNLAETLKNLRESLLLGEEQYEGDD 995

Query: 1447 RSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKT 1268
            R  LE +A NISGIT++QL VFL TCISRYH K+               GEPGTQMTLKT
Sbjct: 996  RGYLEKIALNISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKT 1055

Query: 1267 FHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQ 1088
            FHFAGVASMNVTLGVPRIKEIINAAK+I TPIITT L    N   A+++K RIEKTLL Q
Sbjct: 1056 FHFAGVASMNVTLGVPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQ 1115

Query: 1087 VAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPR 908
            VAKS+K   ASRLASI I+LDM+ IQ +QL +DAYTVK+SILQT K+KLKE Q++VLNPR
Sbjct: 1116 VAKSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPR 1175

Query: 907  KLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKE--KDPTGNKRLKLL 734
            KLEV  QA+++KL FELH LKNK+  VVVKGI +V+RA++  E ++  K+    +  +LL
Sbjct: 1176 KLEVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELL 1235

Query: 733  VEG 725
            VEG
Sbjct: 1236 VEG 1238


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
            polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score = 1729 bits (4477), Expect = 0.0
 Identities = 917/1406 (65%), Positives = 1067/1406 (75%), Gaps = 31/1406 (2%)
 Frame = -2

Query: 4399 SGTEVLKTGEVEVSRGGYYDHTKKPIDNGLLDPHMGPANKMGF-CKTCYGKFAECPGHCG 4223
            SG E+LK  E +V  G YYD T+KPI  GLLDP +GPA K    C+TC   F ECPGH G
Sbjct: 3    SGAEILKAAECQVHLGSYYDSTRKPIQAGLLDPRLGPATKQSSACETCGADFHECPGHFG 62

Query: 4222 YLALALPVYNVGYLNTIVDIMKCICKKCSRVLLEEKERQTFLQKMRNTKTEPLKKNEILK 4043
            YL L LPV+NVGY++ I+DI+KCICK CSR+L +EK  +  L+KMRN + E L+K+E++K
Sbjct: 63   YLNLVLPVFNVGYMSNILDILKCICKSCSRILYDEKLCKADLKKMRNPRIEHLRKSELVK 122

Query: 4042 NVVKKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTK 3869
             +VKKC++M  +K AVKC+RCG +NGMVK+A   L I HDRAK+VD YL+EC+SAI+HTK
Sbjct: 123  KIVKKCSSMTSNK-AVKCTRCGDMNGMVKKAGSVLSIIHDRAKLVDGYLEECRSAIAHTK 181

Query: 3868 EYRGNANVSSTI-DPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFV 3692
            E R   ++++ I  P     L K + +EDCE+L L DRPEKLI+TNI VPPI+IRPSVF 
Sbjct: 182  ESRAPISLATYILTPVKVLSLFKRIPEEDCEVLGLYDRPEKLIITNIAVPPISIRPSVFT 241

Query: 3691 DGGTQSNENDITERLKRIIQANASLRQEMLETNLH-NRSLTSWDDLQMEVAQYINSDVRG 3515
            DG  QSNENDITERLK+IIQANASLR E+LE  +  N+ L SWD LQ  VA Y+NSDVR 
Sbjct: 242  DG-LQSNENDITERLKQIIQANASLRMELLEGRMSVNKYLDSWDGLQAAVALYMNSDVR- 299

Query: 3514 VPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKINQVAIPILMA 3335
            VP  +   +PLSGFVQRLKGKQGRFRGNLSGKRVE+TGRTVISPDPNLKI +VAIPI MA
Sbjct: 300  VPNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKITEVAIPIHMA 359

Query: 3334 RILTYPERVSHHNIEKLRQCVRNGPNKYPGAKYIRQPDGTLISLMNNLRKRHADELKYGY 3155
            RIL+YPERVSHHNIEKLRQ V NGP KYPGA  +R PDG+   L+ + RK  A+EL +G 
Sbjct: 360  RILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRYPDGSSKRLIGSYRKTIAEELTFGC 419

Query: 3154 IVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 2975
            IVDRHLEDGD+VLFNRQPSLHRMSIM HRARIMPWRTLRFNESVCNPYNADFDGDEMNMH
Sbjct: 420  IVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMH 479

Query: 2974 VPQTEEARTEALMLMGV-QNNLCTPKNGEILVASTQDFLTSSYLITRKDTFYDRSSFSLM 2798
            VPQTEEARTEAL+LMGV QNNLCTPKNGEILVASTQDFLTSS+LITR+DTFYDR++FSLM
Sbjct: 480  VPQTEEARTEALLLMGVSQNNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRAAFSLM 539

Query: 2797 CSYMGDATDPIDLPTPALVKPQELWTGKQLFSVLLRPHAKMRVYLNLTLAEKNYGK---- 2630
            CSYM D  D IDLPTPA++KP ELWTGKQLFSVLLRP+A +RVY+NL + EK Y K    
Sbjct: 540  CSYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIYSKPKKG 599

Query: 2629 ---SKETMCPKDGFVYIRNSELISGQLGKATLGNGNKDGLYSVLLRDYNTHAAAACMNRL 2459
                KETMCP DGFVYIRNSELISGQLGKATLGNGNKDGLYS+LLRDYN HAAA CMNRL
Sbjct: 600  DKREKETMCPNDGFVYIRNSELISGQLGKATLGNGNKDGLYSILLRDYNPHAAATCMNRL 659

Query: 2458 AKLS--ARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYGQCTDYIESYKSGSLDLLPG 2285
            AKL   ARWIGNHGFSIGI+DVQPG +L   K  TI   Y QC   IE Y  G L L PG
Sbjct: 660  AKLRQVARWIGNHGFSIGIDDVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKPG 719

Query: 2284 CNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQCGSKGSPINICQMIACVGQ 2105
            C+  +TLE++IT  LN +RE   +VCMK L+WRNSPLIMSQCGSKGS INI QM+ACVGQ
Sbjct: 720  CDATQTLESEITEKLNKLREEAGDVCMKELHWRNSPLIMSQCGSKGSVINISQMVACVGQ 779

Query: 2104 QSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSATEFFFHTMGGREGLVDT 1925
            QSVGGRRAP+GF+DR+LPHF R++K P AKGFV NSFY+GL ATEFFFHTM GREGLVDT
Sbjct: 780  QSVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLMATEFFFHTMAGREGLVDT 839

Query: 1924 AVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMYGGDGMDPAQMEEKSGLPLN 1745
            AVKTADTGYMSRRL+K LEDLS+ YDNTVRNASG IVQF+YG DG+DPA ME K G+PLN
Sbjct: 840  AVKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYGDDGLDPASMEGKGGVPLN 899

Query: 1744 FERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKSTTTREEGFAHNFASSSDTPS 1565
             +RLF K KATCP  E+                   L  S         H+ A       
Sbjct: 900  LDRLFSKVKATCPVREE--------------DYLSPLDISDVVENLLLKHDMALGGI--- 942

Query: 1564 NKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNERQHSEE--------DRSCLENVASN 1418
                C EAF+ SL +F+    K+  S + +    E   SE         +   +E +A  
Sbjct: 943  ----CSEAFKKSLTSFLGSHAKRLESMMKLADGVEDPTSENIQTGGIRGNSKIIERLAHK 998

Query: 1417 ISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHFAGVASMN 1238
            I G++ +Q+ VF++TCI+RY  K+               GEPGTQMTLKTFHFAGVASMN
Sbjct: 999  IFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1058

Query: 1237 VTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKSIKTSQA 1058
            +T GVPRIKEIIN AK+I+TPIIT  L+ + N   A++ KGRI+KT+L QVAKSIK    
Sbjct: 1059 ITQGVPRIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQKTVLGQVAKSIKIVMT 1118

Query: 1057 SRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEVILQADR 878
            SR AS+VITLDMK IQ AQLS+DA  VKE+IL+TP++KLK Q ++VL+ RKLEVI   DR
Sbjct: 1119 SRSASVVITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHIKVLDTRKLEVIPLGDR 1178

Query: 877  NKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPTGNKR----LKLLVEGTGLLS 710
             ++ FELH LKN +  ++V+GI +VERA+I    K+ D   N +      +LVEG GL  
Sbjct: 1179 ERVHFELHNLKNLLPSIIVQGIKTVERAVIAQ--KKHDGKANDQELPTYNMLVEGMGLDL 1236

Query: 709  VMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADLM 530
            VMG +GVDGCKTTSNH++EVQ+ LGIEAARK IIDEI  TM  HGM+IDIRHMMLL DLM
Sbjct: 1237 VMGTEGVDGCKTTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDLM 1296

Query: 529  TFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMGIPMQ 350
            TFKGEVLGITR G+QKM  SVLMLASFEKTADHL++A+V GR D+IEGVSECIIMGIPMQ
Sbjct: 1297 TFKGEVLGITRFGIQKMDKSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPMQ 1356

Query: 349  IGTGMLKVRQSVQPVE-LNYGPDPII 275
            IGTG+LKV+Q V P   LNYG D II
Sbjct: 1357 IGTGILKVQQRVDPPPVLNYGSDSII 1382


>ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Cicer arietinum]
          Length = 1399

 Score = 1715 bits (4442), Expect = 0.0
 Identities = 884/1409 (62%), Positives = 1081/1409 (76%), Gaps = 11/1409 (0%)
 Frame = -2

Query: 4468 FTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDNGLLDPHMGP 4289
            FTK+P+ ED+GPR+I  I +ST S  E+ K GEV+V +G YYD  +KP  +GLLD  MGP
Sbjct: 11   FTKEPFIEDLGPRKIAGITYSTLSEAEISKIGEVQVWKGTYYDAFRKPEADGLLDSRMGP 70

Query: 4288 ANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCSRVLLEEKER 4109
            ANK   C TC+G FA+C GH GYL L  PV+NVGYLNT+V I+KCICK C+ +LL+E  R
Sbjct: 71   ANKSLVCATCHGNFADCQGHYGYLPLVQPVFNVGYLNTMVKILKCICKGCAGILLDEDTR 130

Query: 4108 QTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVK--RAPLRIQ 3935
            + +L+KMRN+K + L+K ++L++++K+      S + +KC RCGYING+VK  R+ LRI 
Sbjct: 131  KKYLKKMRNSKLDELQKIQLLESIMKRFR----SAKFIKCQRCGYINGIVKLTRSTLRIV 186

Query: 3934 HDRAKVVDNYLDECQSAISHTKEYRGNANVSS-TIDPKIAYQLLKNMLDEDCELLYLNDR 3758
            HD +   ++ + E QSA+SH KEYR   +++S  +DPK  + L   M DEDC LLYL +R
Sbjct: 187  HDCSHGKNDVVSELQSALSHMKEYRATNDLASRNLDPKSVHSLFTKMSDEDCALLYLAER 246

Query: 3757 PEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLETNLHNRS 3578
            PEKLI+TNI VPPI IRPSV +DG +QSNENDITE+L++IIQANA+L +E+ E+    + 
Sbjct: 247  PEKLIITNIAVPPIVIRPSVIMDG-SQSNENDITEKLRKIIQANAALHKELEEST---KF 302

Query: 3577 LTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGR 3398
               ++ LQ  VAQYINSDV+G P  M A++PL+GFVQR+KGKQGRFR NLSGKRVEYTGR
Sbjct: 303  QGGFEMLQFLVAQYINSDVKGGPYSMQASKPLTGFVQRIKGKQGRFRSNLSGKRVEYTGR 362

Query: 3397 TVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKYIRQPDG 3218
            TVISPDPNLKI +VAIPI MARILTYPERV+HHNIEKLRQC+RNGP+KYPGAK +R   G
Sbjct: 363  TVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCLRNGPDKYPGAKLLRHAGG 422

Query: 3217 TLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLR 3038
            T  +L  + RKR ADEL++G IVDRHLEDGD+VLFNRQPSLHRMS+M HRARIMPWRTLR
Sbjct: 423  TTWNLKVSCRKRLADELRFGDIVDRHLEDGDVVLFNRQPSLHRMSMMCHRARIMPWRTLR 482

Query: 3037 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 2858
            FNESVCNPYNADFDGDEMN+HVPQTEEARTEAL+LM VQNNLCTPKNGEILVASTQDFLT
Sbjct: 483  FNESVCNPYNADFDGDEMNLHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQDFLT 542

Query: 2857 SSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVLLRPHAK 2678
            SS+LITRKDTFYDRS+FSL+CSYMGD  DPIDLPTPA++KP ELW+GKQLFS+LLRPHA 
Sbjct: 543  SSFLITRKDTFYDRSTFSLICSYMGDGMDPIDLPTPAIIKPVELWSGKQLFSILLRPHAN 602

Query: 2677 MRVYLNLTLAEKNYG-------KSKETMCPKDGFVYIRNSELISGQLGKATLGNGNKDGL 2519
            +RVY+NLT+ EK +        +  +TMCP DGFVY RNSELISGQLGK TLGNGNKDGL
Sbjct: 603  VRVYVNLTVKEKTHNAKLDDRKREMKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGL 662

Query: 2518 YSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYGQ 2339
            +SVLLRDY  HAAA+CMNRLAK SARWIGNHGFSIGI+DVQP   L   KK TI   Y +
Sbjct: 663  FSVLLRDYKAHAAASCMNRLAKFSARWIGNHGFSIGIDDVQPKEILIHRKKETITTGYSE 722

Query: 2338 CTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQC 2159
            C  +IE++  G L+L PGC+ A+TLEAKI   LN++R+TTA VCM+ L+WRNSPLIMSQC
Sbjct: 723  CDGFIEAFNKGKLELAPGCDAAQTLEAKIFQKLNSLRDTTAKVCMQTLHWRNSPLIMSQC 782

Query: 2158 GSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLS 1979
            GSKGSPINICQM+ACVGQQSVGG RA NGF+DR+LPHF ++AK P  KGFV NSF+TGLS
Sbjct: 783  GSKGSPINICQMVACVGQQSVGGCRAANGFVDRSLPHFTKKAKTPADKGFVANSFFTGLS 842

Query: 1978 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMYG 1799
            ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDL +HYD TVR+ +G IVQF YG
Sbjct: 843  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLFLHYDYTVRDTNGGIVQFCYG 902

Query: 1798 GDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKSTT 1619
             DGMDP+ ME K+G PLNF+RLF+K+KA CP+                      +  S  
Sbjct: 903  DDGMDPSGMEGKNGKPLNFDRLFLKSKAICPSDGDDIILSSSDVCEVIRKKLSEVGMSKL 962

Query: 1618 TREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNERQHSEEDRSC 1439
              ++      AS +D  S   G  + F  SL+ F+          L     ++  ++ + 
Sbjct: 963  VEKD------ASENDIMS-VVGFSDDFIKSLQAFVKDN-----TKLTEAIAENDSKNLTN 1010

Query: 1438 LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHF 1259
            L+N    ISGI+R+QL VFL+ C+SRY  KK               GEPGTQMTLKTFHF
Sbjct: 1011 LKNFIPRISGISRRQLEVFLDICLSRYRIKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHF 1070

Query: 1258 AGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAK 1079
            AGVASMNVTLGVPRI EIIN AK I TPI+T  L+ D+N   A++VKGRIEKT L QVAK
Sbjct: 1071 AGVASMNVTLGVPRIIEIINGAKDIKTPIMTAILERDDNANTARMVKGRIEKTNLGQVAK 1130

Query: 1078 SIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLE 899
            SIK    SR A++VI+LDM+RIQ A L++DA+TVKESIL+T K+KLK + V+VL+ +KL+
Sbjct: 1131 SIKVVMTSRSATVVISLDMERIQDAHLNIDAHTVKESILRTAKLKLKAENVKVLDIKKLQ 1190

Query: 898  VILQ-ADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPTGNKRLKLLVEGT 722
            V  + + RN++ F+L+ LKN +  VVVKG+ +VERA++  + K+K     ++  LLVEGT
Sbjct: 1191 VYPRLSGRNEIHFQLNILKNLLPSVVVKGVKTVERAVLEIDKKDKKV---EKFALLVEGT 1247

Query: 721  GLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLL 542
            GL  V+GI+GVDG KT SNH++E+   LGIEAAR  IID+IQYTM SHGM+ID+RH+MLL
Sbjct: 1248 GLQQVLGIEGVDGRKTRSNHVMEMLNVLGIEAARSTIIDQIQYTMGSHGMSIDVRHIMLL 1307

Query: 541  ADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMG 362
            AD+MT +G+VLG+TRHG+QKM  SVLMLASFE + DHLF+AS+ GR D IEGVS+CIIMG
Sbjct: 1308 ADIMTVRGQVLGMTRHGIQKMGRSVLMLASFESSTDHLFDASMRGRGDPIEGVSDCIIMG 1367

Query: 361  IPMQIGTGMLKVRQSVQPVELNYGPDPII 275
             P+++GTGM+ ++Q + P  L  G DPI+
Sbjct: 1368 KPIRVGTGMIDIKQRLDPPVLPKGIDPIL 1396


>gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score = 1714 bits (4440), Expect = 0.0
 Identities = 893/1418 (62%), Positives = 1075/1418 (75%), Gaps = 18/1418 (1%)
 Frame = -2

Query: 4474 IQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDNGLLDPHM 4295
            I FTK+P+ ED GPR+I++++FS  S +E+ K GEV+V +G YYD  KKPI  GLLDP M
Sbjct: 9    ITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRM 68

Query: 4294 GPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCSRVLLEEK 4115
            GPANK   C TC+G F +CPGH GYL LALPV+NVGYL +IV+I+KCICK C+R+LL+E 
Sbjct: 69   GPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDED 128

Query: 4114 ERQTFLQKMRNTKTEPLKKNEILK-NVVKKCNAMAGSKRAVKCSRCGYINGMVKRAP--L 3944
             R+  L+KMR++K   L K + +K  ++K C+      + V C RCGYING VK+ P  L
Sbjct: 129  TRKKHLKKMRSSKKSELDKMDFVKVRIIKDCS------KVVNCPRCGYINGSVKKLPASL 182

Query: 3943 RIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTI-DPKIAYQLLKNMLDEDCELLYL 3767
             I HD +K  +N ++E +S +S  K+ +  ANVS+ I +P     L + MLDEDCELLY+
Sbjct: 183  IIMHDCSKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYV 242

Query: 3766 NDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLETNLH 3587
             +RPEKLI+TNI+VPPIAIRPSV +D    SNENDITERLK IIQANA LRQE+ E+++ 
Sbjct: 243  AERPEKLIITNIVVPPIAIRPSVVMDESL-SNENDITERLKNIIQANAVLRQELQESSVS 301

Query: 3586 NRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKRVEY 3407
            ++ L  W+ LQ EVAQ+INS+VRG+P YM + + L+GFVQRLKGK GRFRGNLSGKRVEY
Sbjct: 302  SKFLDGWEILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEY 361

Query: 3406 TGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKYIRQ 3227
            TGRTVISPDPNLKI++VAIPILMA ILTYPERV+HHNIEKLRQCVRNGP+KYPGA+ +R+
Sbjct: 362  TGRTVISPDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRR 421

Query: 3226 PDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 3047
              G   SL    RKR ADEL+ G IVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR
Sbjct: 422  DGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWR 481

Query: 3046 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 2867
            TLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQD
Sbjct: 482  TLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQD 541

Query: 2866 FLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVLLRP 2687
            FLTSS+L+TRKDTFYDRS+F+ +C+++GD  D IDLPTPA+VKP ELW+GKQLFS+LLRP
Sbjct: 542  FLTSSFLVTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRP 601

Query: 2686 HAKMRVYLNLTLAEKNYGK------SKETMCPKDGFVYIRNSELISGQLGKATLGNGNKD 2525
            HA  +VY+NLT+ EK Y K        +T+CP DGFVY RN+ELISGQ+GK TLGNGNKD
Sbjct: 602  HANFKVYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKD 661

Query: 2524 GLYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEY 2345
            GL+SVLLRDY  HAAA+CMNRLAKLSARWIGNHGFSIGI+DVQP   L K+K  T+ + Y
Sbjct: 662  GLFSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLSEGY 721

Query: 2344 GQCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMS 2165
             +C ++I+++  G L+LL GC+  +TLE +ITG LN +R+    VCM+ L+WRNSPLIMS
Sbjct: 722  KKCDNHIQAFNKGKLELLAGCDAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPLIMS 781

Query: 2164 QCGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTG 1985
            QCGSKGSPINI QM+ACVGQQSVGGRRAPNGFLDR+LPHF   AK P AKGFV NSFY+G
Sbjct: 782  QCGSKGSPINISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSFYSG 841

Query: 1984 LSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFM 1805
            LSATEFFFHTMGGREGLVDTAVKTADTGYMSR+LMK++EDL +HYD TVRNA G IVQF 
Sbjct: 842  LSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGSIVQFC 901

Query: 1804 YGGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKS 1625
            YG DGMDP  ME K+G PLNFERLF+K+KA CP    K                ++LS+ 
Sbjct: 902  YGDDGMDPGGMEGKNGKPLNFERLFLKSKAICP---NKDDDEVLSSSDVCKVVQEKLSEF 958

Query: 1624 TTTREEGFAHNFASSSDTPSNKEGCLEA-----FQNSLRNFIMKKYPSSILMLKSNERQH 1460
              +RE                ++G LE      F  SL++FI           K  E   
Sbjct: 959  GVSREV---------------EKGVLEVGFSADFVQSLQSFIKDN-------TKLTEETF 996

Query: 1459 SEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQM 1280
            ++++   L+     ISGITR QL VFL  C+SRYHSKK               GEPGTQM
Sbjct: 997  TDDNSQILKKFGERISGITRAQLEVFLNICLSRYHSKKIEAGAPVGATGAHSIGEPGTQM 1056

Query: 1279 TLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKT 1100
            TLKTFHFAGVASMNVTLGVPR+KEI+N  K+I+TPIIT  L+  +    A++VKGRIEKT
Sbjct: 1057 TLKTFHFAGVASMNVTLGVPRVKEIMNGNKKISTPIITAILERTDCANTARIVKGRIEKT 1116

Query: 1099 LLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRV 920
             L QVAKSIK    SRLAS+VITLDM+RIQ A L++DA  VKESILQT K KLK + +++
Sbjct: 1117 NLGQVAKSIKVVVTSRLASVVITLDMERIQDAHLNIDANIVKESILQTKKAKLKPEHIKI 1176

Query: 919  LNPRKLEVILQ-ADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDP-TGNKR 746
            L+ +KL V+ Q  DR+KL F+L+ LKN +  VVVKGI + +R +I   +KE+D  T  ++
Sbjct: 1177 LDVKKLRVVPQDGDRSKLHFQLNYLKNLLPSVVVKGIKTADRVVI---SKEEDKITKAEK 1233

Query: 745  LKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTM-SSHGMT 569
             KLLVEGTG   VMG++GVDGCKT SNHI EV+ TLGIEAAR+ I+ EI+Y M  +HGM 
Sbjct: 1234 FKLLVEGTGFREVMGVEGVDGCKTVSNHIHEVRDTLGIEAARECIVKEIKYVMVDTHGMN 1293

Query: 568  IDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIE 389
            ID RHMMLLAD+MT  G +LGI R G+ KM  SVLMLASFE+TAD LF ASV GR D I 
Sbjct: 1294 IDTRHMMLLADVMTATGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIG 1353

Query: 388  GVSECIIMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 275
            GVSE IIMGIP+ IGTGM+KV+Q ++  +L +G  PI+
Sbjct: 1354 GVSESIIMGIPITIGTGMIKVKQRLELPDLPHGASPIL 1391


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 1709 bits (4427), Expect = 0.0
 Identities = 893/1420 (62%), Positives = 1059/1420 (74%), Gaps = 13/1420 (0%)
 Frame = -2

Query: 4495 MARAQAAIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDN 4316
            MAR +  ++ TK+P+ EDVG RRI+SI+FS FSG EV ++ EV+V     Y+H  KP+ N
Sbjct: 1    MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60

Query: 4315 GLLDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCS 4136
            GLLD  MG ANK+G C TC+G FAECPGH GYL LALPV+NVG+ N I+D++KCICK CS
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS 120

Query: 4135 RVLLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVK 3956
            RVLL EK+R  FL+KMRN K +PL+K+ I+K V  KC       +  +C  CG+ING+ K
Sbjct: 121  RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKC-------KLSRCPWCGFINGVAK 173

Query: 3955 --RAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTIDPKIAYQLLKNMLDEDC 3782
              RA L I HD +K +D   +E + A+SH KE + + +    +DP I   L K M DEDC
Sbjct: 174  KGRAGLIILHDCSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDC 232

Query: 3781 ELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEML 3602
            ELL L DRPEKLIVT I VPP+ IRPSVFV GG  SNE+ IT  LK I   N+ L++ + 
Sbjct: 233  ELLNLGDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQ 292

Query: 3601 ETNLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSG 3422
                  +    W  LQ++V +YINSD   +P          G VQRLKGK GRFRGNLSG
Sbjct: 293  TGGQFMKCFDCWQHLQLQVVEYINSDAPSLP-----ESQHRGLVQRLKGKTGRFRGNLSG 347

Query: 3421 KRVEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGA 3242
            KR EYTGRTVISPDPNL+I +VAIPILMAR+LTYPERVS++NIEKLRQC+RNGP+K+PGA
Sbjct: 348  KRTEYTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGA 407

Query: 3241 KYIRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 3062
             +I QPDGT + L    R+  A +LKYG +V+RHLEDGDIVLFNRQPSLHRMSIMSHRAR
Sbjct: 408  NFIIQPDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRAR 467

Query: 3061 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILV 2882
            IMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILV
Sbjct: 468  IMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILV 527

Query: 2881 ASTQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFS 2702
            ASTQDFLTSS+L+TRKD FYDRSSFSL+CSY+GDA + IDLPTPAL+KP ELWTGKQLFS
Sbjct: 528  ASTQDFLTSSFLVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFS 587

Query: 2701 VLLRPHAKMRVYLNLTLAEKNYGKSK------ETMCPKDGFVYIRNSELISGQLGKATLG 2540
            VL+RP+A  +V+LNLT+ EK Y   K      E MCP DGFVY RNSEL+SGQ+GKATLG
Sbjct: 588  VLVRPNACTKVFLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLG 647

Query: 2539 NGNKDGLYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVT 2360
            NGNKDG++S L+RDYN+HAAA+CMNRLAK SAR+IGNHGFSIG++DVQPG  LN+EKK+ 
Sbjct: 648  NGNKDGMFSTLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMK 707

Query: 2359 IDKEYGQCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNS 2180
            ID  Y  C D I SY  G+L L PGCN A+TLE  IT  LN IRE    VCM  L+WRNS
Sbjct: 708  IDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNS 767

Query: 2179 PLIMSQCGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQN 2000
            PLIMSQCGSKGSPINI QM+ACVGQQSVGGRRAPNGF+DRTLPHF   +K P AKGFV N
Sbjct: 768  PLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVAN 827

Query: 1999 SFYTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGF 1820
            SFYTGL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRLMK LEDLSV YD TVRNASG 
Sbjct: 828  SFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGG 887

Query: 1819 IVQFMYGGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXK 1640
            IVQF+YG DGMDPA+ME K G PLN ++LFMK  ATCP   Q +                
Sbjct: 888  IVQFLYGDDGMDPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNT---------------- 931

Query: 1639 RLSKSTTTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFI---MKKYPSSILMLKSNE 1469
             LS     +      N   S    S+ +GC E F+  L  F+   +K   S+   L  +E
Sbjct: 932  -LSPGEILQ----ILNDKLSEHDASSDDGCSEKFKQLLTYFLEDRIKLLKSTRRALLLDE 986

Query: 1468 RQHSEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPG 1289
                E   S  E++A+NISGI+ +QL VFL+TC+SRYH KK               GEPG
Sbjct: 987  DHVGERHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPG 1046

Query: 1288 TQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRI 1109
            TQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK+I+TPIIT  L  + + + A++VKG +
Sbjct: 1047 TQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSM 1106

Query: 1108 EKTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQ 929
            EK +L +VA++IK    S   ++V+ LDM+RI+   + + A +V+ SIL  PK+KLK + 
Sbjct: 1107 EKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEH 1166

Query: 928  VRVLNPRKLEVI-LQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPTGN 752
            VRV++  KL +     D++KL +ELH LK+ + KV+VKGI +VERA+I    +E D    
Sbjct: 1167 VRVIDKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEEND---- 1222

Query: 751  KRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGM 572
            KR KLLVEGT LL+VMG  GVD  KT SNHI+EV +TLGIEAAR+ IIDEIQYTM SHGM
Sbjct: 1223 KRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGM 1282

Query: 571  TIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRI 392
             ID RHMMLLADLMT+KGE+LGITR+G+ KMK SVLMLASFEKTA+HLFNAS +GR D+I
Sbjct: 1283 NIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQI 1342

Query: 391  EGVSECIIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 275
            EGVSECIIMGIPMQ+GTG+LKVRQ +  + E  Y PDPI+
Sbjct: 1343 EGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1382


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
            gi|548832896|gb|ERM95665.1| hypothetical protein
            AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score = 1697 bits (4394), Expect = 0.0
 Identities = 888/1421 (62%), Positives = 1066/1421 (75%), Gaps = 13/1421 (0%)
 Frame = -2

Query: 4495 MARAQAAIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTK-KPID 4319
            M   + A  FTK+P+ ED+GPR+I+S+QF   SG E++K  E +V +  YY+ T  KP +
Sbjct: 1    MDSEKEAFNFTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAE 60

Query: 4318 NGLLDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKC 4139
            +G+LD  MG + K G C TC+G F  CPGH GYL LALPV++VGY  T + +++CICK C
Sbjct: 61   HGVLDTRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSC 120

Query: 4138 SRVLLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMV 3959
            +R+LL E+ER+ FL+K+RN + E  +KN+ +K V+ KC      KR   C RCG  NG+V
Sbjct: 121  ARILLFEEERKQFLKKIRNPRAELHQKNDFVKKVIDKC------KRVRICPRCGDYNGVV 174

Query: 3958 KRA--PLRIQHDRAKV-VDNYLDECQSAISHTKEYRGNANVSSTIDPKIAYQLLKNMLDE 3788
            K+A    RI HDR+K   D    EC++AIS TK    + N+   + P+ A  L + M+DE
Sbjct: 175  KKAGPTFRISHDRSKANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDE 234

Query: 3787 DCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQE 3608
            DC+LLYL DRPEKLI+T+I VPP  IRP+     G++ NEN++T +L  I+Q N +L   
Sbjct: 235  DCDLLYLYDRPEKLIITHIAVPPAGIRPTY--QSGSRLNENELTTKLWEIVQINHTLIDH 292

Query: 3607 MLETNLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNL 3428
            + + NL    + +W  LQ+ VA YINS++  +PL    ++   G VQRLKGKQGRFR NL
Sbjct: 293  VNKGNLPQYYMDTWVLLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNL 352

Query: 3427 SGKRVEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYP 3248
             GKRV++TGRTVISPDPNLKI +VAIP LMA+ILTY ERV+ HNIEKLRQCVRNGP KYP
Sbjct: 353  EGKRVDFTGRTVISPDPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYP 412

Query: 3247 GAKYIRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHR 3068
            GA ++     TL SL    +KR ADELK+G  V+RHLEDG+IVLFNRQPSLHRMSIM HR
Sbjct: 413  GANFVISGGDTL-SLRYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHR 471

Query: 3067 ARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEI 2888
            AR+MPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQ+NLCTPKNGEI
Sbjct: 472  ARVMPWRTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEI 531

Query: 2887 LVASTQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQL 2708
            LVASTQDFLTSSYLITRKDTFYDR++FSLMCSYMGD  + IDLPTPAL+KP ELWTGKQL
Sbjct: 532  LVASTQDFLTSSYLITRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQL 591

Query: 2707 FSVLLRPHAKMRVYLNLTLAEKNYGKSKETMCPKDGFVYIRNSELISGQLGKATLGNGNK 2528
            FSVL+RPHA M+VY+NL+L EKNY K  ETMC  DGFVYIRNSELISGQLGKATLGNGNK
Sbjct: 592  FSVLIRPHAHMKVYVNLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNK 651

Query: 2527 DGLYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKE 2348
            DGL+SVLLRDYN+HAAA+CMNRLAKLSARWIGNHGFSIGI+DV PG  L K+K+  I   
Sbjct: 652  DGLFSVLLRDYNSHAAASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGG 711

Query: 2347 YGQCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIM 2168
            Y  C  +I++Y  G L L PGCN A+TLEA+IT  LN IR+  A VCM+ L+WRNSPLIM
Sbjct: 712  YSNCDAFIDAYDKGKLSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIM 771

Query: 2167 SQCGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYT 1988
            SQCGSKGSPINI QMIACVGQQSVGGRRAPNGF+DR+LPHF R  K P AKGFV NSFYT
Sbjct: 772  SQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYT 831

Query: 1987 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQF 1808
            GL+A EFFFHTMGGREGLVDTAVKTADTGY+SRRL+K+LEDLS HYD+TVRN+SG I+QF
Sbjct: 832  GLTAAEFFFHTMGGREGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQF 891

Query: 1807 MYGGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSK 1628
             YG DGMDPA+ME KSG+PLN +RLFMK KATCPA                      +S 
Sbjct: 892  SYGDDGMDPAKMEGKSGVPLNLDRLFMKIKATCPA---------------------SVSA 930

Query: 1627 STTTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPS---SILMLKSNERQHS 1457
            S +  E     N   S    + + GC  AF+  L NFI K+  +   +  ML  +E    
Sbjct: 931  SLSPSEISTIVNDRLSKHDMTPERGCSMAFKEELSNFIKKRMDAIKKTRNMLGLDEDCVD 990

Query: 1456 EEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMT 1277
            +E  S LE+VA+NISGI+RQQL VFLETCISRYH K+               GEPGTQMT
Sbjct: 991  KEKFSGLEHVAANISGISRQQLRVFLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMT 1050

Query: 1276 LKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTL 1097
            LKTFHFAGVASMN+TLGVPRIKEI+ A+K+I+TPIIT TL CDN+E  A++VKGRIEKTL
Sbjct: 1051 LKTFHFAGVASMNITLGVPRIKEILGASKKISTPIITATLVCDNDEKSARIVKGRIEKTL 1110

Query: 1096 LEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRV- 920
            L +VAK++K S     ASI ITLDMKRI+  Q+++DA TV +SI +  K K+   +++V 
Sbjct: 1111 LGEVAKTVKISVTPTQASINITLDMKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVK 1170

Query: 919  ---LNPRKLEVIL-QADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPTGN 752
                 P KL+++L +  R ++ + LH L++ + K++VKGI +VERA +IN  K K     
Sbjct: 1171 PTFTLPDKLKILLPEIGRKEVLYSLHLLQSLLPKIIVKGIPTVERA-VINNVKGK----- 1224

Query: 751  KRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGM 572
              L LLVEGT LL+VMG  GVDG  TTSNHI+EV+ TLGIEAARK IIDEIQYTM SHGM
Sbjct: 1225 --LNLLVEGTNLLAVMGTPGVDGRNTTSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGM 1282

Query: 571  TIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRI 392
            +ID+RHMMLLADLMTF+G VLGI R G+ KMK+SVLMLASFE+TAD LF+A+  GRVD I
Sbjct: 1283 SIDLRHMMLLADLMTFRGLVLGIQRFGITKMKESVLMLASFERTADILFDATTRGRVDTI 1342

Query: 391  EGVSECIIMGIPMQIGTGMLKVRQ-SVQPVELNYGPDPIIC 272
             GVSECIIMG+PMQIGTG+L V+Q   Q  +L YGPDPIIC
Sbjct: 1343 AGVSECIIMGVPMQIGTGILSVQQRPEQLAKLTYGPDPIIC 1383


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score = 1689 bits (4373), Expect = 0.0
 Identities = 885/1434 (61%), Positives = 1060/1434 (73%), Gaps = 27/1434 (1%)
 Frame = -2

Query: 4495 MARAQAAIQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDN 4316
            MAR +  ++ TK+P+ ED G RRI+SI+FS FSG EV ++ EV+V     Y+   +P+ N
Sbjct: 1    MARPEEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPN 60

Query: 4315 GLLDPHMGPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCS 4136
            GLLD  MG ANK+G C TC+G FAECPGH GYL LALPV+NVG+ N I+D++KCICK CS
Sbjct: 61   GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCS 120

Query: 4135 RVLLEEKERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVK 3956
            RVLL EK+R  FL+KMRN K +PL+K+ I+K V  KC       +  +C  CG+ING+ K
Sbjct: 121  RVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKC-------KLSRCPWCGFINGVAK 173

Query: 3955 --RAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSSTIDPKIAYQLLKNMLDEDC 3782
              RA L I HD +K +D   +E + A+SH KE    + V   +DP     L K M DEDC
Sbjct: 174  KGRAGLIILHDCSKTLDGSTEELKEALSHKKEKLSFSAVHM-LDPATVLSLFKRMTDEDC 232

Query: 3781 ELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEML 3602
            ELL L DRPEKLIVT I VPP+ IRPSVFV GG  SNE+ IT  LK I   N+ L++ + 
Sbjct: 233  ELLNLGDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQ 292

Query: 3601 ETNLHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSG 3422
                  +    W  LQ++V +YINSD   +P          G VQRLKGK GRFRGNLSG
Sbjct: 293  TGGQFMKCFDCWQHLQLQVVEYINSDAPSLP-----ESQHRGLVQRLKGKTGRFRGNLSG 347

Query: 3421 KRVEYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGA 3242
            KR EYTGRTVISPDPNL+I +VAIPILMAR+LTYPERVS++NIEKLRQC+RNGP+K+PGA
Sbjct: 348  KRTEYTGRTVISPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGA 407

Query: 3241 KYIRQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRAR 3062
             +I Q DGT + L    R+  A +LKYG +V+RHLEDGDIVLFNRQPSLHRMSIMSHRAR
Sbjct: 408  NFIIQTDGTKLHLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRAR 467

Query: 3061 IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILV 2882
            IMPWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILV
Sbjct: 468  IMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILV 527

Query: 2881 ASTQDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFS 2702
            ASTQDFLTSS+L+TRKD FYDRSSF+L+CSY+GDA + IDLPTPALVKP ELWTGKQLFS
Sbjct: 528  ASTQDFLTSSFLVTRKDNFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQLFS 587

Query: 2701 VLLRPHAKMRVYLNLTLAEKNYGKSKETMCPKDGFVYIRNSELISGQLGKATLGNGNKDG 2522
            VL+RP+A  +V+LNLT+ EK Y KS+ETMCP DGFVY RNSEL+SGQ+GK TLGNGNKDG
Sbjct: 588  VLVRPNACTKVFLNLTVKEKIYSKSRETMCPNDGFVYFRNSELLSGQVGKKTLGNGNKDG 647

Query: 2521 LYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYG 2342
            ++S+L+RDYN+HAAA+CMNRLAK SAR+IGNHGFSIG++DV+PG  L+++KK  ID+ Y 
Sbjct: 648  MFSILVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVRPGEHLDQQKKKKIDEGYK 707

Query: 2341 QCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQ 2162
            +C D I S+  G+L L PGCN A+TLE KIT  LN IRE   N+CM  L+WRNSPLIMSQ
Sbjct: 708  ECHDLITSFSKGALTLQPGCNAAQTLEHKITHVLNKIREAAGNICMDTLHWRNSPLIMSQ 767

Query: 2161 CGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGL 1982
            CGSKGSPINI QM+ CVGQQSVGG RAPNGF+DRTLPHF   +K P AKGFV NSFY GL
Sbjct: 768  CGSKGSPINISQMVVCVGQQSVGGHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYNGL 827

Query: 1981 S-----------------ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVH 1853
            +                 ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRLMK LEDLSV 
Sbjct: 828  TATEFFFHTMGGIYIVLPATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVF 887

Query: 1852 YDNTVRNASGFIVQFMYGGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXX 1673
            YD TVRNASG IVQF+YG DGMDPA+ME + G PLN ++LFMK  ATCP   Q +     
Sbjct: 888  YDQTVRNASGGIVQFLYGDDGMDPAKMEGEDGKPLNLDQLFMKVMATCPQRGQNT----- 942

Query: 1672 XXXXXXXXXXKRLSKSTTTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSS 1493
                        LS     +      N   S    S+ +GC E F+  L++F+  +    
Sbjct: 943  ------------LSPGEILQ----ILNDKLSEHDASSDDGCSEKFKQLLKDFLEDR---- 982

Query: 1492 ILMLKSNER------QHSEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXX 1331
            I +LKS  R       H  +D S  E++A+NISGI+ +QL VFL+TC+SRYHSKK     
Sbjct: 983  IKLLKSTRRALCLDENHVGKDSSIEESIAANISGISAKQLQVFLDTCLSRYHSKKIEAGA 1042

Query: 1330 XXXXXXXXXXGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQC 1151
                      GEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK+I+TPIIT  L  
Sbjct: 1043 SIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLS 1102

Query: 1150 DNNEIIAKLVKGRIEKTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKE 971
              + + A++VKG +EK +L +VA+ IK    S   ++V+ LDM+RI+   + + A +V+ 
Sbjct: 1103 GKDVLSARVVKGSMEKAVLGEVAEDIKIVLKSSQPNLVVKLDMQRIEDLHMGISADSVQL 1162

Query: 970  SILQTPKMKLKEQQVRVLNPRKLEVILQA-DRNKLQFELHTLKNKISKVVVKGINSVERA 794
            SIL  P++KLK + VRV++  KL V   A D++KL +ELH LK+ + KV+VKGI +VERA
Sbjct: 1163 SILNHPRIKLKSEHVRVIDKAKLRVYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERA 1222

Query: 793  IIINEAKEKDPTGNKRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKK 614
            +I         TG+K   LLVEGT LL+VMG  GVD  KT SNHI+EV +TLGIEAAR+ 
Sbjct: 1223 VI-------SQTGDK-YSLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRS 1274

Query: 613  IIDEIQYTMSSHGMTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTAD 434
            IIDEIQYTM+SHGM ID RHMMLLADLMT+KGE+LGITR+G+ KMK SVLMLASFEKTA+
Sbjct: 1275 IIDEIQYTMTSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAE 1334

Query: 433  HLFNASVNGRVDRIEGVSECIIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 275
            HLFNAS +GR D+IEGVSECIIMGIPMQ+GTG+LKVRQ +  + E  Y PDPI+
Sbjct: 1335 HLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1388


>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
            lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
            ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
          Length = 1376

 Score = 1681 bits (4352), Expect = 0.0
 Identities = 874/1411 (61%), Positives = 1040/1411 (73%), Gaps = 11/1411 (0%)
 Frame = -2

Query: 4474 IQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDNGLLDPHM 4295
            I+FTKQPY EDVGP +I+SI FS  S  EV+K  EV+V +  YY+   KP +NGLLD  M
Sbjct: 7    IEFTKQPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWKNNYYETNLKPYENGLLDARM 66

Query: 4294 GPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCSRVLLEEK 4115
            GP NK   C TC G F  CPGH GYL L LPVYNVG+ N I+DI+KCICK+CS +LL+EK
Sbjct: 67   GPPNKKSICTTCDGNFQNCPGHYGYLKLDLPVYNVGFFNFILDILKCICKRCSNMLLDEK 126

Query: 4114 ERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVKRAPLR-- 3941
              +  L+KMRN K EPLKK E+ K VVKKC+ MA S+R + C +CGY+NGMVK+   +  
Sbjct: 127  LYEDHLRKMRNPKMEPLKKTELAKAVVKKCSTMA-SQRIITCKKCGYLNGMVKKIAAQMG 185

Query: 3940 --IQHDRAKVVDNYLDECQSAISHTKEYRGNAN-VSSTIDPKIAYQLLKNMLDEDCELLY 3770
              I HDR+K+    +DEC+SAISHTKE     N ++  +DP +   L K M D+DCELLY
Sbjct: 186  IGISHDRSKIHGGEVDECKSAISHTKESTRAINPLTYVLDPNLVLGLFKGMSDKDCELLY 245

Query: 3769 LNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLETNL 3590
            +  RPE LI T +LVPP++IRPSV + GGT+SNENDITERLK IIQ NA L + + +   
Sbjct: 246  IAHRPENLITTCMLVPPLSIRPSVMI-GGTRSNENDITERLKLIIQNNACLHRILSQPTT 304

Query: 3589 HNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKRVE 3410
              +++  WD +Q EVA+YINS+VRGV        PLSG +QRLKGKQGRFR NLSGKRVE
Sbjct: 305  SPKNMQVWDTVQSEVAKYINSEVRGVQ-NQPEKTPLSGLLQRLKGKQGRFRANLSGKRVE 363

Query: 3409 YTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKYIR 3230
            YTGRTVISPDPNLKI +V IPILMARILT+PE VS HNIEKLRQCVRNGPNKYPGA+ +R
Sbjct: 364  YTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVR 423

Query: 3229 QPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 3050
             PDG+  +L+ + RKR ADEL  G IVDRHLE+GD VLFNRQPSLHRMSIM HRARIMPW
Sbjct: 424  YPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARIMPW 483

Query: 3049 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 2870
            RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGEILVASTQ
Sbjct: 484  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQ 543

Query: 2869 DFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVLLR 2690
            DFLT+S+LITRKDTFYDR++FSL+CSYMGD  D IDLPTP ++KP ELWTGKQLFSVLLR
Sbjct: 544  DFLTTSFLITRKDTFYDRAAFSLICSYMGDGMDAIDLPTPTILKPIELWTGKQLFSVLLR 603

Query: 2689 PHAKMRVYLNLTLAEKNYGKSK----ETMCPKDGFVYIRNSELISGQLGKATLGNGNKDG 2522
            P+A +RVY+ L + EKN+ K +    ETMC  DG+VY RNSELISGQLGKATLGNGNKDG
Sbjct: 604  PNASVRVYVTLNVKEKNFKKGEHGFDETMCVNDGWVYFRNSELISGQLGKATLGNGNKDG 663

Query: 2521 LYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYG 2342
            LYS+LLRDYN+HAAA CMNRLAKLSARWIG HGFSIGI+DVQPG ELNKE+K +I   Y 
Sbjct: 664  LYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELNKERKDSIQFGYD 723

Query: 2341 QCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQ 2162
            QC   IE +  G+L L  G + A++LEA+ITG LN IRE T   CM  L+WRNSPLIMSQ
Sbjct: 724  QCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQ 783

Query: 2161 CGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGL 1982
            CGSKGSPINI QM+ACVGQQ+V G RAP+GF+DR+LPHF R +K P AKGFV NSFY+GL
Sbjct: 784  CGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGL 843

Query: 1981 SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMY 1802
            +ATEFFFHTMGGREGLVDTAVKTA TGYMSRRLMKALEDL VHYDNTVRNASG I+QF Y
Sbjct: 844  TATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTY 903

Query: 1801 GGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKST 1622
            G DGMDPA ME K G PLNF+RLF+K +ATCP                        S   
Sbjct: 904  GDDGMDPALMEGKDGAPLNFDRLFLKIQATCPP----------------------RSHHN 941

Query: 1621 TTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNERQHSEEDRS 1442
                E  +  F            C +AF  SLR F+      S+L +KS          +
Sbjct: 942  YLSSEELSQKFEEELVRHDKSRVCTDAFVKSLREFV------SLLGVKS----------A 985

Query: 1441 CLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKTFH 1262
                V    SG+T +QL VF++ C+SRY  KK               GEPGTQMTLKTFH
Sbjct: 986  STPQVLYKASGVTDKQLEVFVKICVSRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFH 1045

Query: 1261 FAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVA 1082
            FAGVASMN+T GVPRI EIINA+K I+TP+I+  L+       A+ VKGRIEKT L QVA
Sbjct: 1046 FAGVASMNITQGVPRINEIINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVA 1105

Query: 1081 KSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKL 902
            +SI+    S  AS+ I LD K I+ A LS+  ++VK SIL+TP++KL +  +RVL+   L
Sbjct: 1106 ESIEVLMTSTSASVRIILDNKIIEEACLSISPWSVKNSILKTPRIKLNDNDIRVLD-TGL 1164

Query: 901  EVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEA-KEKDPTGNKRLKLLVEG 725
            ++    D+++  F LH LKN +  ++V GI +VER ++  +  K K   G  R KL VEG
Sbjct: 1165 DITPVVDKSRTHFNLHNLKNVLPNIIVNGIKTVERVVVAEDMDKNKQIDGKTRWKLFVEG 1224

Query: 724  TGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMML 545
            T LL+VMG  G++G  TTSN+++EV +TLGIEAAR  IIDEI   M +HGM+IDIRHMML
Sbjct: 1225 TNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMML 1284

Query: 544  LADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIM 365
            LAD+MT++GEVLGI R G+QKM  SVLM ASFE+T DHLF+A+++G+VD IEGV+EC+IM
Sbjct: 1285 LADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAISGKVDNIEGVTECVIM 1344

Query: 364  GIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 275
            GIPM++GTG+LKV Q    + +L YG DPII
Sbjct: 1345 GIPMKLGTGILKVLQRTDDLPKLKYGADPII 1375


>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
            gi|557101978|gb|ESQ42341.1| hypothetical protein
            EUTSA_v10012446mg [Eutrema salsugineum]
          Length = 1375

 Score = 1679 bits (4348), Expect = 0.0
 Identities = 868/1410 (61%), Positives = 1045/1410 (74%), Gaps = 10/1410 (0%)
 Frame = -2

Query: 4474 IQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDNGLLDPHM 4295
            I+FTKQPY EDVGP +I+SI FS FS  E++K  EV+V R  YY+   KP++ GLLDP M
Sbjct: 7    IEFTKQPYIEDVGPLKIKSINFSIFSDLEIMKAAEVQVWRNNYYESNFKPVEGGLLDPRM 66

Query: 4294 GPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCSRVLLEEK 4115
            GP NK   C TC+  F  CPGH GYL L LPVYNVG+LN I+DI+KCICK+CS +L++EK
Sbjct: 67   GPPNKKSICATCHADFQNCPGHFGYLKLDLPVYNVGFLNYILDILKCICKRCSNILIDEK 126

Query: 4114 ERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVKRAPLR-- 3941
              +  L+KMRN K EPLKK E+ K VVKKC+ MA S+R + C  CGY+NGMVK+   +  
Sbjct: 127  LYEDHLKKMRNPKMEPLKKTELAKAVVKKCSMMA-SQRIITCKNCGYLNGMVKKVAAQMG 185

Query: 3940 ---IQHDRAKVVDNYLDECQSAISHTKEYRGNAN-VSSTIDPKIAYQLLKNMLDEDCELL 3773
               I HDR+K+    +DE +SAISHT+E  G  N ++  +DP +   L K M D+DCELL
Sbjct: 186  IIGISHDRSKIHGGEVDEFKSAISHTRESTGAINPLTYVLDPNLVLGLFKGMSDKDCELL 245

Query: 3772 YLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLETN 3593
            Y+  RPE L +  + VPP+  RPSV + GGTQSNEND+TER+K+I+Q NAS ++ + +  
Sbjct: 246  YIAHRPENLFIICMFVPPLPTRPSVRI-GGTQSNENDLTERVKKILQDNASCKKILNQAT 304

Query: 3592 LHNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKRV 3413
               +++  WD +Q EVAQYINS+VRG+P     ++PLSG +QRLKGKQGRFR NLSGKRV
Sbjct: 305  TSPKNMQVWDTVQSEVAQYINSEVRGIP-NQPDSKPLSGILQRLKGKQGRFRANLSGKRV 363

Query: 3412 EYTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKYI 3233
            EYTGRTVISPDPNLKI +V IPILMARILT+PE VS HNIEKLRQCVRNGPNKYPGA+ +
Sbjct: 364  EYTGRTVISPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPGARSV 423

Query: 3232 RQPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMP 3053
            R PDG+  +L+ + RKR ADEL  G IVDRHLE+GD VLFNRQPSLHRMSIM HRARIMP
Sbjct: 424  RYPDGSSRTLVGDYRKRIADELTIGCIVDRHLEEGDAVLFNRQPSLHRMSIMCHRARIMP 483

Query: 3052 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAST 2873
            WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGEILVAST
Sbjct: 484  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVAST 543

Query: 2872 QDFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVLL 2693
            QDFLTSSYLITRKDTFYDR++FSL+CSYMGDA D IDLPTP ++KP ELWTGKQ+FSVLL
Sbjct: 544  QDFLTSSYLITRKDTFYDRAAFSLICSYMGDAMDAIDLPTPTILKPIELWTGKQVFSVLL 603

Query: 2692 RPHAKMRVYLNLTLAEKNY--GKSKETMCPKDGFVYIRNSELISGQLGKATLGNGNKDGL 2519
            RP+A +RVY+ L + EKN+  GK  ETMC  DG+VY RNSELISGQLGKATLGNGNKDGL
Sbjct: 604  RPNASVRVYVTLNVKEKNFKKGKYDETMCTNDGWVYFRNSELISGQLGKATLGNGNKDGL 663

Query: 2518 YSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYGQ 2339
            YSVLLRDYN+HAAA CMNRLAKLSARWIG HGFS+GI+DVQPG EL +E++  I+K Y  
Sbjct: 664  YSVLLRDYNSHAAAVCMNRLAKLSARWIGIHGFSLGIDDVQPGEELREEREKIINKGYED 723

Query: 2338 CTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQC 2159
            C   I  +  G L L  G + A++LE+ ITG LN IRE T  +CM+ L+WRNSPLIMSQC
Sbjct: 724  CGLKIRDFNEGRLQLKAGLDTAKSLESDITGILNRIREATGKLCMEGLHWRNSPLIMSQC 783

Query: 2158 GSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLS 1979
            GSKGSPINI QM+ACVGQQ+V G RAP+GF+DR+LPHF R +K P+AKGFV NSFY+GL+
Sbjct: 784  GSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKTPEAKGFVANSFYSGLT 843

Query: 1978 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMYG 1799
            ATEFFFHTMGGREGLVDTAVKTA TGYMSRRLMKALEDL VHYDNTVRNASG I+QF YG
Sbjct: 844  ATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYG 903

Query: 1798 GDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKSTT 1619
             DGMDP  ME K G PLNF+RLF+K +ATCP                      R   S  
Sbjct: 904  DDGMDPVLMEGKDGAPLNFDRLFLKIQATCP---------------------PRSHHSFL 942

Query: 1618 TREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNERQHSEEDRSC 1439
            + EE     F            C +AF  SLR F+      S+L L+S            
Sbjct: 943  SSEE-LLQKFEEELVRHDTSRVCTDAFVKSLREFL------SLLGLRSTSP--------- 986

Query: 1438 LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKTFHF 1259
               V    SG+T +Q+ VF++ C+SRY  K                GEPGTQMTLKTFHF
Sbjct: 987  -SQVFYKASGVTDKQIEVFVKICVSRYREKTIEAGTAIGTIGAQSIGEPGTQMTLKTFHF 1045

Query: 1258 AGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAK 1079
            AGVASMN+T GVPRI EIINA+K I+TP+I+  L+       A+ VKGRIEKT L QVA+
Sbjct: 1046 AGVASMNITQGVPRINEIINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAE 1105

Query: 1078 SIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLE 899
            SI+    S  AS+ I LD KRI+ A LS+  ++VK SIL+TP++KL +  +R+L+   L+
Sbjct: 1106 SIEVLMTSTSASVRIILDNKRIEEACLSISPWSVKTSILKTPRIKLNDDNIRILD-SGLD 1164

Query: 898  VILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEA-KEKDPTGNKRLKLLVEGT 722
            +    D++ + F LH LKN +  ++V GI +VER ++  +  K+K   G KR KL VEGT
Sbjct: 1165 ITPVGDKSGIHFGLHNLKNVLPNIIVNGIKTVERVVVAEDTDKKKQIDGKKRWKLFVEGT 1224

Query: 721  GLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLL 542
             LL+VMG  G++G  TTSN+I+EV +TLGIEAAR  IIDEI   M +HGM+IDIRHMMLL
Sbjct: 1225 NLLAVMGTPGINGRTTTSNNIVEVSKTLGIEAARTTIIDEIGSVMGNHGMSIDIRHMMLL 1284

Query: 541  ADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMG 362
            AD+MT++GEVLGI R G+QKM  SVLM ASFE+T DHLF+A+V+G+VD IEGV+EC+IMG
Sbjct: 1285 ADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAVSGKVDNIEGVTECVIMG 1344

Query: 361  IPMQIGTGMLKVRQSVQPV-ELNYGPDPII 275
            IPM++GTG+LKV Q    + +L YG DPII
Sbjct: 1345 IPMKLGTGILKVLQRTDDLPKLKYGADPII 1374


>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
            gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
            [Arabidopsis thaliana]
          Length = 1376

 Score = 1673 bits (4333), Expect = 0.0
 Identities = 867/1411 (61%), Positives = 1041/1411 (73%), Gaps = 11/1411 (0%)
 Frame = -2

Query: 4474 IQFTKQPYAEDVGPRRIESIQFSTFSGTEVLKTGEVEVSRGGYYDHTKKPIDNGLLDPHM 4295
            I+FTK+PY EDVGP +I+SI FS  S  EV+K  EV+V   G YDH+ KP +NGLLDP M
Sbjct: 7    IEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRM 66

Query: 4294 GPANKMGFCKTCYGKFAECPGHCGYLALALPVYNVGYLNTIVDIMKCICKKCSRVLLEEK 4115
            GP NK   C TC G F  CPGH GYL L LPVYNVGY N I+DI+KCICK+CS +LL+EK
Sbjct: 67   GPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEK 126

Query: 4114 ERQTFLQKMRNTKTEPLKKNEILKNVVKKCNAMAGSKRAVKCSRCGYINGMVKRAPLR-- 3941
              +  L+KMRN + EPLKK E+ K VVKKC+ MA S+R + C +CGY+NGMVK+   +  
Sbjct: 127  LYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMA-SQRIITCKKCGYLNGMVKKIAAQFG 185

Query: 3940 --IQHDRAKVVDNYLDECQSAISHTKEYRGNAN-VSSTIDPKIAYQLLKNMLDEDCELLY 3770
              I HDR+K+    +DEC+SAISHTK+     N ++  +DP +   L K M D+DCELLY
Sbjct: 186  IGISHDRSKIHGGEIDECKSAISHTKQSTAAINPLTYVLDPNLVLGLFKRMSDKDCELLY 245

Query: 3769 LNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQEMLETNL 3590
            +  RPE LI+T +LVPP++IRPSV + GG QSNEND+T RLK+II  NASL + + +   
Sbjct: 246  IAYRPENLIITCMLVPPLSIRPSVMI-GGIQSNENDLTARLKQIILGNASLHKILSQPTS 304

Query: 3589 HNRSLTSWDDLQMEVAQYINSDVRGVPLYMTAARPLSGFVQRLKGKQGRFRGNLSGKRVE 3410
              +++  WD +Q+EVA+YINS+VRG         PLSG +QRLKGK GRFR NLSGKRVE
Sbjct: 305  SPKNMQVWDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGKRVE 363

Query: 3409 YTGRTVISPDPNLKINQVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKYIR 3230
            +TGRTVISPDPNLKI +V IPILMA+ILT+PE VS HNIEKLRQCVRNGPNKYPGA+ +R
Sbjct: 364  FTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVR 423

Query: 3229 QPDGTLISLMNNLRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPW 3050
             PDG+  +L+ + RKR ADEL  G IVDRHL++GD+VLFNRQPSLHRMSIM HRARIMPW
Sbjct: 424  YPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPW 483

Query: 3049 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 2870
            RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGEILVASTQ
Sbjct: 484  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQ 543

Query: 2869 DFLTSSYLITRKDTFYDRSSFSLMCSYMGDATDPIDLPTPALVKPQELWTGKQLFSVLLR 2690
            DFLTSS+LITRKDTFYDR++FSL+CSYMGD  D IDLPTP ++KP ELWTGKQ+FSVLLR
Sbjct: 544  DFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLR 603

Query: 2689 PHAKMRVYLNLTLAEKNYGKSK----ETMCPKDGFVYIRNSELISGQLGKATLGNGNKDG 2522
            P+A +RVY+ L + EKN+ K +    ETMC  DG+VY RNSELISGQLGKATLGNGNKDG
Sbjct: 604  PNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGNKDG 663

Query: 2521 LYSVLLRDYNTHAAAACMNRLAKLSARWIGNHGFSIGINDVQPGVELNKEKKVTIDKEYG 2342
            LYS+LLRDYN+HAAA CMNRLAKLSARWIG HGFSIGI+DVQPG EL+KE+K +I   Y 
Sbjct: 664  LYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYD 723

Query: 2341 QCTDYIESYKSGSLDLLPGCNNAETLEAKITGTLNNIRETTANVCMKNLNWRNSPLIMSQ 2162
            QC   IE +  G+L L  G + A++LEA+ITG LN IRE T   CM  L+WRNSPLIMSQ
Sbjct: 724  QCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQ 783

Query: 2161 CGSKGSPINICQMIACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGL 1982
            CGSKGSPINI QM+ACVGQQ+V G RAP+GF+DR+LPHF R +K P AKGFV NSFY+GL
Sbjct: 784  CGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGL 843

Query: 1981 SATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDNTVRNASGFIVQFMY 1802
            +ATEFFFHTMGGREGLVDTAVKTA TGYMSRRLMKALEDL VHYDNTVRNASG I+QF Y
Sbjct: 844  TATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTY 903

Query: 1801 GGDGMDPAQMEEKSGLPLNFERLFMKTKATCPAIEQKSXXXXXXXXXXXXXXXKRLSKST 1622
            G DGMDPA ME K G PLNF RLF+K +ATCP                        S  T
Sbjct: 904  GDDGMDPALMEGKDGAPLNFNRLFLKVQATCPP----------------------RSHHT 941

Query: 1621 TTREEGFAHNFASSSDTPSNKEGCLEAFQNSLRNFIMKKYPSSILMLKSNERQHSEEDRS 1442
                E  +  F            C +AF  SLR F+      S+L +KS          +
Sbjct: 942  YLSSEELSQKFEEELVRHDKSRVCTDAFVKSLREFV------SLLGVKS----------A 985

Query: 1441 CLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXGEPGTQMTLKTFH 1262
                V    SG+T +QL VF++ C+ RY  KK               GEPGTQMTLKTFH
Sbjct: 986  SPPQVLYKASGVTDKQLEVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFH 1045

Query: 1261 FAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVA 1082
            FAGVASMN+T GVPRI EIINA+K I+TP+I+  L+       A+ VKGRIEKT L QVA
Sbjct: 1046 FAGVASMNITQGVPRINEIINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVA 1105

Query: 1081 KSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKL 902
            +SI+    S  AS+ I LD K I+ A LS+  ++VK SIL+TP++KL +  +RVL+   L
Sbjct: 1106 ESIEVLMTSTSASVRIILDNKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVLD-TGL 1164

Query: 901  EVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEA-KEKDPTGNKRLKLLVEG 725
            ++    D+++  F LH LKN +  ++V GI +VER ++  +  K K   G  + KL VEG
Sbjct: 1165 DITPVVDKSRAHFNLHNLKNVLPNIIVNGIKTVERVVVAEDMDKSKQIDGKTKWKLFVEG 1224

Query: 724  TGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMML 545
            T LL+VMG  G++G  TTSN+++EV +TLGIEAAR  IIDEI   M +HGM+IDIRHMML
Sbjct: 1225 TNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMML 1284

Query: 544  LADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIM 365
            LAD+MT++GEVLGI R G+QKM  SVLM ASFE+T DHLF+A+ +G+VD IEGV+EC+IM
Sbjct: 1285 LADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIM 1344

Query: 364  GIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 275
            GIPM++GTG+LKV Q    + +L YGPDPII
Sbjct: 1345 GIPMKLGTGILKVLQRTDDLPKLKYGPDPII 1375