BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00005496
         (791 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   252   1e-64
gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ...   249   8e-64
gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus pe...   246   7e-63
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   246   9e-63
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   244   2e-62
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   244   2e-62
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   244   2e-62
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   242   1e-61
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              242   1e-61
ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   241   2e-61
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           236   5e-60
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           236   9e-60
ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   235   1e-59
gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus...   232   1e-58
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   231   3e-58
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   229   6e-58
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   229   1e-57
ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   227   4e-57
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   227   4e-57
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...   221   2e-55

>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  252 bits (643), Expect = 1e-64
 Identities = 136/212 (64%), Positives = 154/212 (72%), Gaps = 26/212 (12%)
 Frame = -2

Query: 559 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTA 386
           S+I PPPP+   PVIRVSN++AHLG PK+GPKPRQL+SLPPFPG PLPGR S  A HVTA
Sbjct: 18  SRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFPGLPLPGRNSM-ASHVTA 76

Query: 385 ISWLKYYFDDIPPPVIQNHFNNGLIQMGC--------YKGQTVSMRKIKPSDIMEVGARV 230
           ISW+KYYFD+I    IQ+HFN GL  + C        Y GQ +S+RKIK +DIME GARV
Sbjct: 77  ISWVKYYFDEILDSAIQSHFNKGLAHIECPNGSGSIEYGGQ-MSLRKIKHNDIMEAGARV 135

Query: 229 YAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KGSLP 98
           +  VSVAE++ISKRFD IP GTLYPNADEI YLQRLVKY                KG+LP
Sbjct: 136 HVAVSVAETRISKRFDTIPSGTLYPNADEIQYLQRLVKYKDSAIIVLNKPPRLPVKGNLP 195

Query: 97  VHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           +HNSMD      LSYDYDEGPKLV RLDRESS
Sbjct: 196 LHNSMDALAAAALSYDYDEGPKLVQRLDRESS 227


>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 471

 Score =  249 bits (636), Expect = 8e-64
 Identities = 129/213 (60%), Positives = 152/213 (71%), Gaps = 27/213 (12%)
 Frame = -2

Query: 559 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTA 386
           S++ PPPP+   PV+RVSN +A+LG PK+GPKPRQL+SLPPFPG+PLPG+       VTA
Sbjct: 18  SRVAPPPPAYADPVLRVSNSVAYLGAPKQGPKPRQLLSLPPFPGYPLPGKNPGGTARVTA 77

Query: 385 ISWLKYYFDDIPPPVIQNHFNNGLIQM-------GCYK--GQTVSMRKIKPSDIMEVGAR 233
           ISWLKYYFD+IP   IQ+HFN GL+QM        C +  G    +RKIK +++MEVG R
Sbjct: 78  ISWLKYYFDEIPDSAIQSHFNKGLVQMESSNAGDTCIERDGLMKPLRKIKHNEVMEVGTR 137

Query: 232 VYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KGSL 101
           V+ PVS+AE++ISKRFD IP GTLYPN DEI YLQRLVKY                KGSL
Sbjct: 138 VWVPVSIAETRISKRFDCIPSGTLYPNKDEIDYLQRLVKYKDYAILVLNKPPKLPVKGSL 197

Query: 100 PVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           PVHNSMD      LSYD+DEGPKLVHRLDRESS
Sbjct: 198 PVHNSMDALAAAALSYDHDEGPKLVHRLDRESS 230


>gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  246 bits (628), Expect = 7e-63
 Identities = 129/218 (59%), Positives = 151/218 (69%), Gaps = 26/218 (11%)
 Frame = -2

Query: 577 VRRNPRSKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTS 404
           V R   S++ PPP     P+IRVSNH+A LG PKEGPKPRQL+SLPPFPGHPLPG++S  
Sbjct: 13  VARREYSRVCPPPAKSAGPLIRVSNHVARLGPPKEGPKPRQLLSLPPFPGHPLPGKRSHE 72

Query: 403 A---EHVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGC-----YKGQTVSMRKIKPSDIM 248
                 VTA+SW+KYYFD I    IQ+HF  GL+QM C      +GQ   MRKI+PS++M
Sbjct: 73  GGVVSRVTAVSWVKYYFDGIYDSTIQSHFKQGLVQMECPGMIEKEGQMKPMRKIRPSEVM 132

Query: 247 EVGARVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY--------------- 113
           EVGARVY PVSV ES++S+RFD IP GTLYPNADEI Y+QR VKY               
Sbjct: 133 EVGARVYVPVSVVESRVSRRFDCIPSGTLYPNADEIEYMQRRVKYKDSAIIVLNKPPKLP 192

Query: 112 -KGSLPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
            KG+LPVHNSMD      LSY  ++GPKLVHRLDRESS
Sbjct: 193 VKGNLPVHNSMDALAAAALSYGNNKGPKLVHRLDRESS 230


>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  246 bits (627), Expect = 9e-63
 Identities = 131/229 (57%), Positives = 156/229 (68%), Gaps = 31/229 (13%)
 Frame = -2

Query: 595 QKAFSAVRRNPRSKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLP 422
           Q  F  VR    S+I PP P+   PVIRVSN++A LG PKEGPKPRQL+SLPPFP HPLP
Sbjct: 10  QGLFPVVRHY--SRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLP 67

Query: 421 GRKSTSAE----HVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGCY---------KGQTV 281
           G+   +      HVTAISW+KYYFD+IP  V+Q+HFN GL+ M            +GQ  
Sbjct: 68  GKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIK 127

Query: 280 SMRKIKPSDIMEVGARVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY---- 113
            +RKIKP+++ME G R+Y PVSVAE++ISKRFD IP GTL+PNADEI YLQRLV Y    
Sbjct: 128 PLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDPA 187

Query: 112 ------------KGSLPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
                       KG+LPVHNSMD      L++DY+EGPKLVHRLDRESS
Sbjct: 188 ILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESS 236


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score =  244 bits (623), Expect = 2e-62
 Identities = 127/204 (62%), Positives = 149/204 (73%), Gaps = 27/204 (13%)
 Frame = -2

Query: 532 QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAE-----HVTAISWLKY 368
           +PVIRVSN+I HLGR KEG KP QL+SLPPFPGHPLPG+K  +       HVTAISW+KY
Sbjct: 32  EPVIRVSNNITHLGRQKEGAKPSQLLSLPPFPGHPLPGKKVATGPDQPSCHVTAISWIKY 91

Query: 367 YFDDIPPPVIQNHFNNGLIQMG------CYKGQTVSMRKIKPSDIMEVGARVYAPVSVAE 206
           YFD+IP  VIQ HFN GL+Q+         +GQT  +RKIK S++MEVGAR++ P+SVAE
Sbjct: 92  YFDEIPGSVIQTHFNKGLVQLEFNELFTSKEGQTRLLRKIKHSEVMEVGARIHVPISVAE 151

Query: 205 SKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KGSLPVHNSMDXX 74
           ++ISKR+DVIP GTLYPNADEI YLQRLV Y                KG+LPVHNSMD  
Sbjct: 152 TRISKRYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPLKGNLPVHNSMDAL 211

Query: 73  XXXXLSYDYDEGPKLVHRLDRESS 2
               LSY+YDEGP+LVHRLDRESS
Sbjct: 212 AAAALSYEYDEGPRLVHRLDRESS 235


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  244 bits (623), Expect = 2e-62
 Identities = 128/215 (59%), Positives = 151/215 (70%), Gaps = 29/215 (13%)
 Frame = -2

Query: 559 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRK----STSAE 398
           S+I PPPP+  +P+IRVSN+IA LG PKEGPK RQL+SLPPFPG+PLPG+     S  + 
Sbjct: 17  SRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYPLPGKNQVGVSGEST 76

Query: 397 HVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGC-------YKGQTVSMRKIKPSDIMEVG 239
           HVTAI W+KYYFD+I    IQ+HF  GL+Q+ C        KG    MRKI+  +IME G
Sbjct: 77  HVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGGLDEKGNLKPMRKIRSGEIMETG 136

Query: 238 ARVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KG 107
           AR++ PVSVAE K+++RFD IP GTLYPNADEI YLQRLVKY                KG
Sbjct: 137 ARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYKDSAIIVLNKPPKLPVKG 196

Query: 106 SLPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           +LPVHNSMD      LSYDYD+GPKLVHRLDRESS
Sbjct: 197 TLPVHNSMDALADAALSYDYDDGPKLVHRLDRESS 231


>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  244 bits (623), Expect = 2e-62
 Identities = 128/215 (59%), Positives = 151/215 (70%), Gaps = 29/215 (13%)
 Frame = -2

Query: 559 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRK----STSAE 398
           S+I PPPP+  +P+IRVSN+IA LG PKEGPK RQL+SLPPFPG+PLPG+     S  + 
Sbjct: 17  SRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYPLPGKNQVGVSGEST 76

Query: 397 HVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGC-------YKGQTVSMRKIKPSDIMEVG 239
           HVTAI W+KYYFD+I    IQ+HF  GL+Q+ C        KG    MRKI+  +IME G
Sbjct: 77  HVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGGLDEKGNLKPMRKIRSGEIMETG 136

Query: 238 ARVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KG 107
           AR++ PVSVAE K+++RFD IP GTLYPNADEI YLQRLVKY                KG
Sbjct: 137 ARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYKDSAIIVLNKPPKLPVKG 196

Query: 106 SLPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           +LPVHNSMD      LSYDYD+GPKLVHRLDRESS
Sbjct: 197 TLPVHNSMDALADAALSYDYDDGPKLVHRLDRESS 231


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
           gi|550341843|gb|ERP62872.1| hypothetical protein
           POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  242 bits (617), Expect = 1e-61
 Identities = 126/200 (63%), Positives = 146/200 (73%), Gaps = 25/200 (12%)
 Frame = -2

Query: 526 VIRVS-NHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTAISWLKYYFDDIP 350
           V+RV+  ++A LG PKEGPKPRQL+SLPPFPG PLPG+KS +A HVTAISW+KYYFD+I 
Sbjct: 22  VVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFPLPGKKSLNACHVTAISWVKYYFDEIQ 81

Query: 349 PPVIQNHFNNGLIQMGC--------YKGQTVSMRKIKPSDIMEVGARVYAPVSVAESKIS 194
             VIQ+HFN  L+Q+ C         +G    MRKIKPSD+MEVGAR++ PVSVAE+ IS
Sbjct: 82  DSVIQSHFNKSLVQIECPSSSDSVEMEGLGKPMRKIKPSDVMEVGARIHIPVSVAETAIS 141

Query: 193 KRFDVIPCGTLYPNADEIHYLQRLVKY----------------KGSLPVHNSMDXXXXXX 62
           KRFD IP GTLYPNADEI YLQRLVKY                KG++P+HNSMD      
Sbjct: 142 KRFDTIPSGTLYPNADEIEYLQRLVKYKDSALLVLNKPPKVPVKGNMPIHNSMDALAAAA 201

Query: 61  LSYDYDEGPKLVHRLDRESS 2
           LSY YDEGPKLVHRLDRESS
Sbjct: 202 LSYGYDEGPKLVHRLDRESS 221


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  242 bits (617), Expect = 1e-61
 Identities = 130/231 (56%), Positives = 155/231 (67%), Gaps = 33/231 (14%)
 Frame = -2

Query: 595 QKAFSAVRRNPRSKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLP 422
           Q  F  VR    S+I PP P+   PVIRVSN++A LG PKEGPKPRQL+SLPPFP HPLP
Sbjct: 10  QGLFPVVRHY--SRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLP 67

Query: 421 GRKSTSAE----HVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGCY---------KGQTV 281
           G+   +      HVTAISW+KYYFD+IP  V+Q+HFN GL+ M            +GQ  
Sbjct: 68  GKSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIK 127

Query: 280 SMRKIKPSDIMEVGARVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRL------- 122
            +RKIKP+++ME G R+Y PVSVAE++ISKRFD IP GTL+PNADEI YLQRL       
Sbjct: 128 PLRKIKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQD 187

Query: 121 -----------VKYKGSLPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
                      V  KG+LPVHNSMD      L++DY+EGPKLVHRLDRESS
Sbjct: 188 PAILVLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESS 238


>ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 469

 Score =  241 bits (615), Expect = 2e-61
 Identities = 127/210 (60%), Positives = 147/210 (70%), Gaps = 24/210 (11%)
 Frame = -2

Query: 559 SKIRPPPPSQ----PVIRVSNHIAHLGRPKEGPKPRQLISLPPFP-GHPLPGRKST---S 404
           S   PPPP+     P+IRVSNH+A LG PK GPKPRQL+SLPPFP G  LPG+KS    +
Sbjct: 19  SSTSPPPPASAAPPPLIRVSNHVAKLGPPKAGPKPRQLLSLPPFPAGRHLPGKKSYHDGA 78

Query: 403 AEHVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGCYKGQTVSMRKIKPSDIMEVGARVYA 224
             HVTA+SWL+YYF +I    I++HFN GL+QM C       MRKI+PS++ME GARVY 
Sbjct: 79  VSHVTAVSWLRYYFHEIDDAAIRSHFNKGLVQMECESSIGKHMRKIRPSEVMEEGARVYV 138

Query: 223 PVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KGSLPVH 92
            VS+AESK+S+RFD IP  TLYPNADEI YLQRLVKY                KG++PVH
Sbjct: 139 AVSIAESKVSRRFDCIPSETLYPNADEIDYLQRLVKYKDSAIIVLNKPPKLPVKGNVPVH 198

Query: 91  NSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           NSMD      LSYDYDEGPKLVHRLDRESS
Sbjct: 199 NSMDALAAAALSYDYDEGPKLVHRLDRESS 228


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  236 bits (603), Expect = 5e-60
 Identities = 127/209 (60%), Positives = 151/209 (72%), Gaps = 23/209 (11%)
 Frame = -2

Query: 559 SKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTA 386
           S+IRPP  ++  PVIRVSN++A LG PKEGPKPRQL+SLPPFPG PLPG+KS   E VTA
Sbjct: 10  SRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLPGKKS---ERVTA 66

Query: 385 ISWLKYYFDDIPPPVIQNHFNNGLIQMGCYK-GQTVS--------MRKIKPSDIMEVGAR 233
           I+W+KYYF+++   VIQ+HFN  L+QM C   G  ++        MRKIKP+++M  G R
Sbjct: 67  ITWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMRKIKPNEVMVEGTR 126

Query: 232 VYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRL------------VKYKGSLPVHN 89
           +Y PVSVAES+ISKRFDVIP GTL+PNADEI YLQRL            +  KG LPVHN
Sbjct: 127 IYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRLDSAILVLNKPPRLPVKGHLPVHN 186

Query: 88  SMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           SMD      LSYDY EGPKLVHRLDR+SS
Sbjct: 187 SMDALAAAALSYDYSEGPKLVHRLDRDSS 215


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  236 bits (601), Expect = 9e-60
 Identities = 127/209 (60%), Positives = 150/209 (71%), Gaps = 23/209 (11%)
 Frame = -2

Query: 559 SKIRPPPPSQ--PVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTA 386
           S+IRPP  ++  PVIRVSN++A LG PKEGPKPRQL+SLPPFPG PLPG+ S   E VTA
Sbjct: 10  SRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLPGKNS---ERVTA 66

Query: 385 ISWLKYYFDDIPPPVIQNHFNNGLIQMGCYK-GQTVS--------MRKIKPSDIMEVGAR 233
           ISW+KYYF+++   VIQ+HFN  L+QM C   G  ++        MRKIKP+++M  G R
Sbjct: 67  ISWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMRKIKPNEVMVEGTR 126

Query: 232 VYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRL------------VKYKGSLPVHN 89
           +Y PVSVAES+ISKRFDVIP GTL+PNADEI YLQRL            +  KG LPVHN
Sbjct: 127 IYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRLDSAILVLNKPPRLPVKGHLPVHN 186

Query: 88  SMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           SMD      LSYDY EGPKLVHRLDR+SS
Sbjct: 187 SMDALAAAALSYDYSEGPKLVHRLDRDSS 215


>ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Solanum
           lycopersicum]
          Length = 475

 Score =  235 bits (600), Expect = 1e-59
 Identities = 124/204 (60%), Positives = 148/204 (72%), Gaps = 27/204 (13%)
 Frame = -2

Query: 532 QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAE-----HVTAISWLKY 368
           +PVIRVSN+I HLGR K+G KP QL+SLPPFPG PLPG+K  +       HVTAISW+KY
Sbjct: 32  EPVIRVSNNITHLGRQKDGVKPSQLLSLPPFPGCPLPGKKVATGPDQPSCHVTAISWIKY 91

Query: 367 YFDDIPPPVIQNHFNNGLIQMGCYK------GQTVSMRKIKPSDIMEVGARVYAPVSVAE 206
           YFD+IP  VIQ+HFN GL+Q+   +      GQT  +RKIK S++MEVGAR++ P+SVAE
Sbjct: 92  YFDEIPGSVIQSHFNKGLVQLELNELFTSKEGQTRLLRKIKHSEVMEVGARIHVPISVAE 151

Query: 205 SKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KGSLPVHNSMDXX 74
           ++ISKR+DVIP GTLYPNADEI YLQRLV Y                KG+L VHNSMD  
Sbjct: 152 TRISKRYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNKPPKLPVKGNLHVHNSMDAL 211

Query: 73  XXXXLSYDYDEGPKLVHRLDRESS 2
               LSY+YDEGP+LVHRLDRESS
Sbjct: 212 AAAALSYEYDEGPRLVHRLDRESS 235


>gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  232 bits (592), Expect = 1e-58
 Identities = 123/217 (56%), Positives = 152/217 (70%), Gaps = 31/217 (14%)
 Frame = -2

Query: 559 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTS----AE 398
           S+I+PP P   +PVIRVSN++A L  PKEGPKPRQL+SLPPFPGHPLP + STS     +
Sbjct: 23  SRIQPPRPVSVEPVIRVSNNVARLDAPKEGPKPRQLLSLPPFPGHPLPAKSSTSDPGQRD 82

Query: 397 HVTAISWLKYYFDDIPPPVIQNHFNNGLIQM------GCY---KGQTVSMRKIKPSDIME 245
           +VTA++W+KYYF      VI++HF  GL+QM        Y   +     MRKI+P+++M+
Sbjct: 83  YVTAVNWIKYYFKGAWGSVIESHFREGLVQMEDEVTADSYTQKENLMKPMRKIRPNEVMK 142

Query: 244 VGARVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY---------------- 113
            GARV+ PVS+AE+++SKR+D IPCGTLYPNADEI YLQRLV Y                
Sbjct: 143 HGARVHVPVSIAETRVSKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPV 202

Query: 112 KGSLPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           KG+LPVHNSMD      LSYDYDEGPKLVHRLDRE+S
Sbjct: 203 KGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETS 239


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  231 bits (588), Expect = 3e-58
 Identities = 123/211 (58%), Positives = 146/211 (69%), Gaps = 25/211 (11%)
 Frame = -2

Query: 559 SKIRPPPPSQPVIRVSNH-IAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTAI 383
           S+I PP P+  VIRVS   +AHLG PK GPKPRQL+SLPPFPGH LPG+      HVTA+
Sbjct: 19  SRISPPRPA--VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHWGRQCHVTAV 76

Query: 382 SWLKYYFDDIPPPVIQNHFNNGLIQMGC--------YKGQTVSMRKIKPSDIMEVGARVY 227
           SW+KYYFD++   VIQ+HFN GL+QM C         +GQ   +RKIK +++ME GAR++
Sbjct: 77  SWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF 136

Query: 226 APVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KGSLPV 95
            PVS+ E +ISKR+D IP GTL PNADEI YL+RLVKY                KG LPV
Sbjct: 137 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 196

Query: 94  HNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           HNSMD      LSYDY+EGPKLVHRLDRESS
Sbjct: 197 HNSMDALAAAALSYDYNEGPKLVHRLDRESS 227


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 476

 Score =  229 bits (585), Expect = 6e-58
 Identities = 123/214 (57%), Positives = 147/214 (68%), Gaps = 28/214 (13%)
 Frame = -2

Query: 559 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSA----E 398
           S+I+PP P   +PVI VSN+IA L  PKEGPKPRQL+SLPPFPGHPLP + S S     +
Sbjct: 22  SRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISGSRQRD 81

Query: 397 HVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGCYKGQTVS------MRKIKPSDIMEVGA 236
           +VTA++W+KYYF      VI++HF  GL+QM      T        MRKI+P+++M+ GA
Sbjct: 82  YVTAVNWIKYYFKGTWGSVIESHFREGLVQMEADDSSTQKEEQMKPMRKIRPNEVMKRGA 141

Query: 235 RVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KGS 104
           RV+ PVS+ E++ISKR+D IP GTLYPNADEI YLQRLV Y                KGS
Sbjct: 142 RVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGS 201

Query: 103 LPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           LPVHNSMD      LSYDYDEGPKLVHRLDRESS
Sbjct: 202 LPVHNSMDALAAAALSYDYDEGPKLVHRLDRESS 235


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  229 bits (583), Expect = 1e-57
 Identities = 122/211 (57%), Positives = 146/211 (69%), Gaps = 25/211 (11%)
 Frame = -2

Query: 559 SKIRPPPPSQPVIRVSNH-IAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSAEHVTAI 383
           S+I PP P+  VIRVS   +AHLG PK GPKPRQL+SLPPFPGH LPG+      HVTA+
Sbjct: 19  SRISPPRPA--VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHWGRQGHVTAV 76

Query: 382 SWLKYYFDDIPPPVIQNHFNNGLIQMGC--------YKGQTVSMRKIKPSDIMEVGARVY 227
           SW+KYYFD++   VIQ+HFN GL+QM C         +GQ   +RKIK +++ME GAR++
Sbjct: 77  SWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF 136

Query: 226 APVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY----------------KGSLPV 95
            PVS+ E +ISKR+D IP GTL PNADEI YL+RLVKY                KG+LPV
Sbjct: 137 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGNLPV 196

Query: 94  HNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           HNSMD      LSYD +EGPKLVHRLDRESS
Sbjct: 197 HNSMDALAAAALSYDNNEGPKLVHRLDRESS 227


>ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X2 [Cicer arietinum]
          Length = 360

 Score =  227 bits (578), Expect = 4e-57
 Identities = 126/217 (58%), Positives = 148/217 (68%), Gaps = 31/217 (14%)
 Frame = -2

Query: 559 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSA----E 398
           S+IRPP P   + VIRVSN+IA L  PKEGPKPRQL+SLPPFP HPLPG+ STSA    +
Sbjct: 22  SRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLPGKNSTSAPGKRD 81

Query: 397 HVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGCY---------KGQTVSMRKIKPSDIME 245
           HVTA++W+KYYF      VI++HF  GL+QM            K     MRKI+P+++M+
Sbjct: 82  HVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMRKIRPNEVMK 141

Query: 244 VGARVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY---------------- 113
            GARV+  VS+AE+KISKRFD IP GTL PNADEI YLQRLV Y                
Sbjct: 142 PGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIMLNKPPKLPV 201

Query: 112 KGSLPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           KG+LPVHNSMD      LSYDYD+GPKLVHRLDRESS
Sbjct: 202 KGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESS 238


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score =  227 bits (578), Expect = 4e-57
 Identities = 126/217 (58%), Positives = 148/217 (68%), Gaps = 31/217 (14%)
 Frame = -2

Query: 559 SKIRPPPPS--QPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKSTSA----E 398
           S+IRPP P   + VIRVSN+IA L  PKEGPKPRQL+SLPPFP HPLPG+ STSA    +
Sbjct: 22  SRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLPGKNSTSAPGKRD 81

Query: 397 HVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGCY---------KGQTVSMRKIKPSDIME 245
           HVTA++W+KYYF      VI++HF  GL+QM            K     MRKI+P+++M+
Sbjct: 82  HVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMRKIRPNEVMK 141

Query: 244 VGARVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY---------------- 113
            GARV+  VS+AE+KISKRFD IP GTL PNADEI YLQRLV Y                
Sbjct: 142 PGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIMLNKPPKLPV 201

Query: 112 KGSLPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
           KG+LPVHNSMD      LSYDYD+GPKLVHRLDRESS
Sbjct: 202 KGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESS 238


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
           gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
           pseudouridine synthase 3, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 3; AltName:
           Full=RNA-uridine isomerase 3; Flags: Precursor
           gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis
           thaliana] gi|56790228|gb|AAW30031.1| At1g78910
           [Arabidopsis thaliana] gi|332198052|gb|AEE36173.1| RNA
           pseudourine synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score =  221 bits (563), Expect = 2e-55
 Identities = 115/219 (52%), Positives = 150/219 (68%), Gaps = 33/219 (15%)
 Frame = -2

Query: 559 SKIRPPPPSQPVIRVSNHIAHLGRPKEGPKPRQLISLPPFPGHPLPGRKS-------TSA 401
           S++ PPP S  VIRV+N++AHLG PK+GP PRQLISLPPFPGHPLPG+ +        S 
Sbjct: 21  SRVAPPPSS--VIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADGDDGDSG 78

Query: 400 EHVTAISWLKYYFDDIPPPVIQNHFNNGLIQMGCYKGQ----------TVSMRKIKPSDI 251
            HVTAISW+KYYF++I    IQ HF  GL+QM  ++G+           + MRKIK +++
Sbjct: 79  GHVTAISWVKYYFEEIYDKAIQTHFTKGLVQME-FRGRRDASREKEDGAIPMRKIKHNEV 137

Query: 250 MEVGARVYAPVSVAESKISKRFDVIPCGTLYPNADEIHYLQRLVKY-------------- 113
           M++G +++ PVS+AE +ISKR+D IP GTLYPNADEI YLQRLV++              
Sbjct: 138 MQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKL 197

Query: 112 --KGSLPVHNSMDXXXXXXLSYDYDEGPKLVHRLDRESS 2
             KG++P+HNSMD      LS+  DEGP+LVHRLDRE+S
Sbjct: 198 PVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETS 236