BLASTX nr result
ID: Rehmannia22_contig00003689
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia22_contig00003689
(595 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 167 8e-62
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 150 9e-58
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 150 1e-57
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 150 1e-57
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 150 3e-57
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 150 3e-57
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 152 3e-56
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 149 3e-56
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 149 3e-56
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 152 4e-56
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 152 4e-56
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 152 4e-56
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 150 4e-56
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 145 5e-56
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 143 1e-55
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 141 2e-55
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 141 2e-55
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 149 2e-55
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 142 2e-55
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 142 2e-55
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 167 bits (422), Expect(2) = 8e-62
Identities = 77/114 (67%), Positives = 94/114 (82%)
Frame = +3
Query: 249 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 428
YTPQQNG+AERMNRT+LERVR ML+ SGLSK FW EA TA ++INRSPS L K P+
Sbjct: 546 YTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKTPQE 605
Query: 429 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLWLKSQ 590
+TGK D+ +LKVFGC+A+ H K DKLEPRAVKC+FLGYP+GVKGY+LW+++Q
Sbjct: 606 KWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQ 659
Score = 96.7 bits (239), Expect(2) = 8e-62
Identities = 39/67 (58%), Positives = 56/67 (83%)
Frame = +2
Query: 11 LEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQT 190
L+Y+H+D+WGP+ V + GG+RYFL++IDD+SRKVW++ LKNKS+ F FK+WK L+E QT
Sbjct: 450 LDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQT 509
Query: 191 GKKIKIL 211
+K+K L
Sbjct: 510 SRKVKKL 516
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 150 bits (379), Expect(2) = 9e-58
Identities = 68/111 (61%), Positives = 87/111 (78%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ + R ML+ +GL K+FW EAV TA Y+INRSPS + K P
Sbjct: 548 PHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 607
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+L+VFGC A+AH KLEPRA+KC+FLGYP GVKGY+LW
Sbjct: 608 KVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLW 658
Score = 99.8 bits (247), Expect(2) = 9e-58
Identities = 39/68 (57%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY ++++DD+SRKVW + LK+K FDVFK+WKT++E Q
Sbjct: 452 ILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 511
Query: 188 TGKKIKIL 211
T +K+KIL
Sbjct: 512 TERKVKIL 519
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 150 bits (378), Expect(2) = 1e-57
Identities = 67/111 (60%), Positives = 88/111 (79%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ + R +L+ +GL K+FW EAV TA Y+INRSPS + K P
Sbjct: 794 PHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 853
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+L+VFGC+A+AH KLEPRA+KC+FLGYP GVKGY+LW
Sbjct: 854 EVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLW 904
Score = 99.8 bits (247), Expect(2) = 1e-57
Identities = 39/68 (57%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY ++++DD+SRKVW + LK+K FDVFK+WKT++E Q
Sbjct: 698 ILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 757
Query: 188 TGKKIKIL 211
T +K+KIL
Sbjct: 758 TERKVKIL 765
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 150 bits (378), Expect(2) = 1e-57
Identities = 67/111 (60%), Positives = 88/111 (79%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ + R +L+ +GL K+FW EAV TA Y+INRSPS + K P
Sbjct: 587 PHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 646
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+L+VFGC+A+AH KLEPRA+KC+FLGYP GVKGY+LW
Sbjct: 647 EVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLW 697
Score = 99.8 bits (247), Expect(2) = 1e-57
Identities = 39/68 (57%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY ++++DD+SRKVW + LK+K FDVFK+WKT++E Q
Sbjct: 491 ILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 550
Query: 188 TGKKIKIL 211
T +K+KIL
Sbjct: 551 TERKVKIL 558
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 150 bits (379), Expect(2) = 3e-57
Identities = 70/110 (63%), Positives = 87/110 (79%)
Frame = +3
Query: 249 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 428
+TPQQNGVAERMN+TL++R R M +GLSKKFW EAV TAAY++NRSPS + K P+
Sbjct: 900 HTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQE 959
Query: 429 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++GK ++S LK+FGC A+AH KLEPRA+KC+FLGY GVKGYRLW
Sbjct: 960 VWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLW 1009
Score = 98.2 bits (243), Expect(2) = 3e-57
Identities = 39/68 (57%), Positives = 55/68 (80%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
+LEY+H+D+WGP+ V +H G RY+++ IDDFSRKVWV+ LK K +VF FK+WKT++E +
Sbjct: 803 VLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKR 862
Query: 188 TGKKIKIL 211
TGK +K L
Sbjct: 863 TGKVVKTL 870
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 150 bits (379), Expect(2) = 3e-57
Identities = 70/110 (63%), Positives = 87/110 (79%)
Frame = +3
Query: 249 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 428
+TPQQNGVAERMN+TL++R R M +GLSKKFW EAV TAAY++NRSPS + K P+
Sbjct: 687 HTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQE 746
Query: 429 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++GK ++S LK+FGC A+AH KLEPRA+KC+FLGY GVKGYRLW
Sbjct: 747 VWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLW 796
Score = 98.2 bits (243), Expect(2) = 3e-57
Identities = 39/68 (57%), Positives = 55/68 (80%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
+LEY+H+D+WGP+ V +H G RY+++ IDDFSRKVWV+ LK K +VF FK+WKT++E +
Sbjct: 590 VLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKR 649
Query: 188 TGKKIKIL 211
TGK +K L
Sbjct: 650 TGKVVKTL 657
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 152 bits (384), Expect(2) = 3e-56
Identities = 70/111 (63%), Positives = 88/111 (79%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA TA Y+INRSPS+PL+ K P
Sbjct: 579 PHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPI 638
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G D+S LKVFGC+A+AH KLEPRAVKC+FLGY GVKGY+LW
Sbjct: 639 EVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW 689
Score = 92.8 bits (229), Expect(2) = 3e-56
Identities = 38/67 (56%), Positives = 52/67 (77%)
Frame = +2
Query: 11 LEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQT 190
L+Y+HAD+WGP+ + GG+RY L+VIDD+SRKVW + LK+K D F FK WK +IE QT
Sbjct: 484 LDYVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQT 543
Query: 191 GKKIKIL 211
+K+K+L
Sbjct: 544 ERKVKLL 550
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 149 bits (376), Expect(2) = 3e-56
Identities = 67/111 (60%), Positives = 86/111 (77%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ + R ML+ +GL K+FW EAV TA Y+INRSP + K P
Sbjct: 572 PHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPI 631
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+LKVFGC+A+AH KLEPR +KC+FLGYP GVKGY+LW
Sbjct: 632 KVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLW 682
Score = 95.9 bits (237), Expect(2) = 3e-56
Identities = 37/68 (54%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY +++++D+SRKVW + LK+K F+VFK+WKT++E Q
Sbjct: 476 ILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQ 535
Query: 188 TGKKIKIL 211
T +K+KIL
Sbjct: 536 TERKVKIL 543
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 149 bits (376), Expect(2) = 3e-56
Identities = 67/111 (60%), Positives = 86/111 (77%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ + R ML+ +GL K+FW EAV TA Y+INRSP + K P
Sbjct: 404 PHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPI 463
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+LKVFGC+A+AH KLEPR +KC+FLGYP GVKGY+LW
Sbjct: 464 KVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLGYPSGVKGYKLW 514
Score = 95.9 bits (237), Expect(2) = 3e-56
Identities = 37/68 (54%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY +++++D+SRKVW + LK+K F+VFK+WKT++E Q
Sbjct: 308 ILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQ 367
Query: 188 TGKKIKIL 211
T +K+KIL
Sbjct: 368 TERKVKIL 375
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 152 bits (384), Expect(2) = 4e-56
Identities = 70/111 (63%), Positives = 88/111 (79%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA TA Y+INRSPS+PL+ K P
Sbjct: 579 PHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPI 638
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G D+S LKVFGC+A+AH KLEPRAVKC+FLGY GVKGY+LW
Sbjct: 639 EVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW 689
Score = 92.4 bits (228), Expect(2) = 4e-56
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +2
Query: 11 LEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQT 190
L+Y+HAD+WGP+ + GG+RY L++IDD+SRKVW + LK+K D F FK WK +IE QT
Sbjct: 484 LDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQT 543
Query: 191 GKKIKIL 211
+K+K+L
Sbjct: 544 ERKVKLL 550
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 152 bits (384), Expect(2) = 4e-56
Identities = 70/111 (63%), Positives = 88/111 (79%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA TA Y+INRSPS+PL+ K P
Sbjct: 581 PHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPI 640
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G D+S LKVFGC+A+AH KLEPRAVKC+FLGY GVKGY+LW
Sbjct: 641 EVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW 691
Score = 92.4 bits (228), Expect(2) = 4e-56
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +2
Query: 11 LEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQT 190
L+Y+HAD+WGP+ + GG+RY L++IDD+SRKVW + LK+K D F FK WK +IE QT
Sbjct: 486 LDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQT 545
Query: 191 GKKIKIL 211
+K+K+L
Sbjct: 546 ERKVKLL 552
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 152 bits (384), Expect(2) = 4e-56
Identities = 70/111 (63%), Positives = 88/111 (79%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA TA Y+INRSPS+PL+ K P
Sbjct: 579 PHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPI 638
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G D+S LKVFGC+A+AH KLEPRAVKC+FLGY GVKGY+LW
Sbjct: 639 EVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGYKLW 689
Score = 92.4 bits (228), Expect(2) = 4e-56
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +2
Query: 11 LEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQT 190
L+Y+HAD+WGP+ + GG+RY L++IDD+SRKVW + LK+K D F FK WK +IE QT
Sbjct: 484 LDYVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQT 543
Query: 191 GKKIKIL 211
+K+K+L
Sbjct: 544 ERKVKLL 550
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 150 bits (380), Expect(2) = 4e-56
Identities = 67/111 (60%), Positives = 89/111 (80%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
PYTPQQNGVAERMNRT++ + R ML+ + ++K+FW EA TA Y+INRSPS+PL+ K P
Sbjct: 580 PYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPI 639
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
+++G D+S L+VFGC+A+AH +KLEPRA+KC+FLGY GVKGY+LW
Sbjct: 640 EIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGYKLW 690
Score = 94.0 bits (232), Expect(2) = 4e-56
Identities = 38/68 (55%), Positives = 54/68 (79%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+HAD+WGP+ + GG+RY L++IDD+SRKVW + LK+K D F FK+WK +IE Q
Sbjct: 484 ILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQ 543
Query: 188 TGKKIKIL 211
T K++K+L
Sbjct: 544 TEKEVKVL 551
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 145 bits (367), Expect(2) = 5e-56
Identities = 66/111 (59%), Positives = 85/111 (76%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ + R ML+ +GL K+FW EAV TA Y+INRSPS + K P
Sbjct: 408 PHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 467
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++ +S+L+VF C+A+AH KLEPRA+KC+FLGYP GVKGY+LW
Sbjct: 468 EVWSSSPAKYSDLRVFSCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLW 518
Score = 98.6 bits (244), Expect(2) = 5e-56
Identities = 39/68 (57%), Positives = 56/68 (82%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGP T+ GG+RY +++IDD+SRKVW + LK+K FDVFK+WKT++E Q
Sbjct: 312 ILDYVHSDLWGPTCKTSFGGARYMMTIIDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 371
Query: 188 TGKKIKIL 211
T +K+KIL
Sbjct: 372 TERKVKIL 379
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 143 bits (361), Expect(2) = 1e-55
Identities = 65/111 (58%), Positives = 85/111 (76%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMNRT++ + R ML+ + L K+FW EAV TA Y+INRSPS + K P
Sbjct: 496 PHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKTPI 555
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+L+VFGC+A+AH KLEPR +KC+FLGY GVKGY+LW
Sbjct: 556 EVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLW 606
Score = 99.8 bits (247), Expect(2) = 1e-55
Identities = 39/68 (57%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY ++++DD+SRKVW + LK+K FDVFK+WKT++E Q
Sbjct: 400 ILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 459
Query: 188 TGKKIKIL 211
T +K+KIL
Sbjct: 460 TERKVKIL 467
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 141 bits (356), Expect(2) = 2e-55
Identities = 64/111 (57%), Positives = 83/111 (74%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMN ++ + R ML+ + L K+FW EAV T Y+INRSPS K P
Sbjct: 622 PHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPI 681
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+L+VFGC+A+AH KLEPRA+KC+FLGYP GVKGY+LW
Sbjct: 682 EVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLW 732
Score = 100 bits (250), Expect(2) = 2e-55
Identities = 40/68 (58%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY ++++DD+SRKVW + LK+K FDVFK+WKT++E Q
Sbjct: 526 ILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 585
Query: 188 TGKKIKIL 211
T KK+KIL
Sbjct: 586 TEKKVKIL 593
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 141 bits (356), Expect(2) = 2e-55
Identities = 64/111 (57%), Positives = 83/111 (74%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
P+TPQQNGVAERMN ++ + R ML+ + L K+FW EAV T Y+INRSPS K P
Sbjct: 622 PHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPI 681
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+L+VFGC+A+AH KLEPRA+KC+FLGYP GVKGY+LW
Sbjct: 682 EVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLW 732
Score = 100 bits (250), Expect(2) = 2e-55
Identities = 40/68 (58%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY ++++DD+SRKVW + LK+K FDVFK+WKT++E Q
Sbjct: 526 ILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 585
Query: 188 TGKKIKIL 211
T KK+KIL
Sbjct: 586 TEKKVKIL 593
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 149 bits (377), Expect(2) = 2e-55
Identities = 67/111 (60%), Positives = 87/111 (78%)
Frame = +3
Query: 246 PYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPE 425
PYTPQQNGVAERMNRT++ + ML+ + ++K+FW EA TA Y+INRSPS+PL+ K P
Sbjct: 317 PYTPQQNGVAERMNRTIISKAHCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPI 376
Query: 426 FVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G D+S L+VFGC+A+AH KLEPRA+KC+FLGY GVKGY+LW
Sbjct: 377 EVWSGMSADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGYKLW 427
Score = 92.4 bits (228), Expect(2) = 2e-55
Identities = 38/68 (55%), Positives = 53/68 (77%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+HAD+WGP+ + GG+RY L++IDD SRKVW + LK+K D F FK+WK +IE Q
Sbjct: 221 ILDYVHADLWGPSHKPSLGGARYMLTIIDDHSRKVWPYFLKHKDDTFAAFKEWKVMIERQ 280
Query: 188 TGKKIKIL 211
T K++K+L
Sbjct: 281 TEKEVKVL 288
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 142 bits (358), Expect(2) = 2e-55
Identities = 65/110 (59%), Positives = 84/110 (76%)
Frame = +3
Query: 249 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 428
YTPQQNGVAERMNRT++ + R ML+ +GL K+FW AV T Y+INRSPS + K P
Sbjct: 416 YTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475
Query: 429 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+L+VFGC+A+AH KLEPRA+KC+FLGY GVKGY+LW
Sbjct: 476 VWSGFPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLW 525
Score = 99.8 bits (247), Expect(2) = 2e-55
Identities = 39/68 (57%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY ++++DD+SRKVW + LK+K FDVFK+WKT++E Q
Sbjct: 323 ILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 382
Query: 188 TGKKIKIL 211
T +K+KIL
Sbjct: 383 TERKVKIL 390
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 142 bits (358), Expect(2) = 2e-55
Identities = 65/110 (59%), Positives = 84/110 (76%)
Frame = +3
Query: 249 YTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEF 428
YTPQQNGVAERMNRT++ + R ML+ +GL K+FW AV T Y+INRSPS + K P
Sbjct: 416 YTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIK 475
Query: 429 VFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLGYPEGVKGYRLW 578
V++G ++S+L+VFGC+A+AH KLEPRA+KC+FLGY GVKGY+LW
Sbjct: 476 VWSGFPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYSSGVKGYKLW 525
Score = 99.8 bits (247), Expect(2) = 2e-55
Identities = 39/68 (57%), Positives = 57/68 (83%)
Frame = +2
Query: 8 ILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVFLLKNKSDVFDVFKQWKTLIENQ 187
IL+Y+H+D+WGPA T+ GG+RY ++++DD+SRKVW + LK+K FDVFK+WKT++E Q
Sbjct: 323 ILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQ 382
Query: 188 TGKKIKIL 211
T +K+KIL
Sbjct: 383 TERKVKIL 390