BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00003481
         (906 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   184   4e-44
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   178   2e-42
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   176   1e-41
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        176   1e-41
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     174   3e-41
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    174   3e-41
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               172   1e-40
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                172   1e-40
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         172   2e-40
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           172   2e-40
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   171   3e-40
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   171   3e-40
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   171   4e-40
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   171   4e-40
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  171   4e-40
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     170   8e-40
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   170   8e-40
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   169   1e-39
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   168   2e-39
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   168   2e-39

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  184 bits (467), Expect = 4e-44
 Identities = 104/271 (38%), Positives = 147/271 (54%), Gaps = 1/271 (0%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNCPKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPK 650
            CYNC + GH+ R+CP  ++ +   + Q ND    A    +   V  + +  + ++   P+
Sbjct: 232  CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPE 291

Query: 649  STCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALT 470
            S  +W++D+A + H TP R+LF  Y     G+V M N   SKIAGIGD+C+K   G  L 
Sbjct: 292  S--EWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLV 349

Query: 469  LKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNTESE 290
            LK+VRHVPDL  NLIS  AL+ DG E  +     ++ KG+LVI K   +  LY  N E  
Sbjct: 350  LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAE-- 407

Query: 289  HESYVHNSVNSVQSD-KTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGK 113
                    +N+ Q +   DLWHKR+GHMS KGL+IL K       K + +  CD C+ GK
Sbjct: 408  ---ICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGK 464

Query: 112  HSRVKFPVSPFPNQSICFDILEYLHADVWGP 20
              RV F  S         +IL+ +++DV GP
Sbjct: 465  QHRVSFQTS----SERKLNILDLVYSDVCGP 491


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  178 bits (452), Expect = 2e-42
 Identities = 96/275 (34%), Positives = 156/275 (56%), Gaps = 1/275 (0%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNCPKG-KQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSP 653
            C+ CG+ GH+ + C K  ++N++      N ++++A ++ +     MV    D    V+ 
Sbjct: 221  CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPA-MVLLATDETLVVTD 279

Query: 652  KSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYAL 473
                +W++D+ C+FHMTP ++ F ++KE+ +G V M N+  S + GIG + ++   G  +
Sbjct: 280  SIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQV 339

Query: 472  TLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNTES 293
             L +VR++P++  NLIS   LED G   +   G++KI+KG   I K +K+  LY+ +  +
Sbjct: 340  ILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDGVT 399

Query: 292  EHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGK 113
            E E   H+S      D+T LWH RLGHMS KG+EIL K G   ++ +  + FC+ CV GK
Sbjct: 400  E-EGESHSSAE--VKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGK 456

Query: 112  HSRVKFPVSPFPNQSICFDILEYLHADVWGPASEP 8
              RV F     P Q +  + L Y+H+D+WG    P
Sbjct: 457  QHRVSFA----PAQHVTKEKLAYVHSDLWGSPHNP 487


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  176 bits (446), Expect = 1e-41
 Identities = 103/279 (36%), Positives = 154/279 (55%), Gaps = 4/279 (1%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNCPKGKQNQNFNNYQSNDQANMASTS--GSTGDVFMVYDLCDYVNFVS 656
            C  C +  H+I+ C K    QN    +S+ +A++ +++    +GD  +V+  C       
Sbjct: 236  CKYCKKKIHFIKECWK---LQNKEKRKSDGKASVVTSAKNSDSGDCLVVFAGC------- 285

Query: 655  PKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGY 479
              S  +W++D+AC+FH+   R+ FS+YK V NG V+ M N+   +I GIG V +K   G 
Sbjct: 286  VASHDEWILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGI 345

Query: 478  ALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCN 302
              TLK+VRH+P +  NLIS + L+ +G +     GV+K+ KG+LV    +    NLYV  
Sbjct: 346  TRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLR 405

Query: 301  TESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCV 122
              + H S    +V   + +KT+LWH RLGHMS  G+  L K           M FC+ CV
Sbjct: 406  GSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCV 465

Query: 121  LGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPASEPT 5
             GKH RVKF  S    +     IL+Y+HAD+WGP+ +P+
Sbjct: 466  FGKHKRVKFNTSVHRTKG----ILDYVHADLWGPSRKPS 500


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  176 bits (446), Expect = 1e-41
 Identities = 102/286 (35%), Positives = 150/286 (52%), Gaps = 15/286 (5%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNC--------------PKGKQNQNFNNYQSNDQANMASTSGSTGDVFM 692
            C  C   GH I  C              PKGK+ +         +A + +   S  ++ +
Sbjct: 236  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEE-------GKAAVVTDEKSDAELLV 288

Query: 691  VYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGI 512
             Y  C        +++ QW++D+ACT+HM P R+ F+ Y+ V  G+VLM ++   ++AGI
Sbjct: 289  AYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGI 341

Query: 511  GDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKA 332
            G V +K   G   TL +VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA
Sbjct: 342  GTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 401

Query: 331  E-KKRNLYVCNTESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDK 155
              K  NLY     +   +    S +   SD T+LWH RLGHMS  GL  L K G      
Sbjct: 402  SIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQS 461

Query: 154  LSCMPFCDSCVLGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
            +S + FC+ C+ GKH RVKF  S    +     IL+Y+H+D+WGPA
Sbjct: 462  ISKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPA 503


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  174 bits (442), Expect = 3e-41
 Identities = 99/279 (35%), Positives = 150/279 (53%), Gaps = 8/279 (2%)
 Frame = -3

Query: 829 CYNCGEHGHYIRNC----PKGKQNQNF---NNYQSNDQANMASTSGSTGDVFMVYDLCDY 671
           C  C   GH I  C     K K+ + +      +   +A + +   S  ++ + Y  C  
Sbjct: 145 CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGC-- 202

Query: 670 VNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKF 491
                 +++ QW++D+ACT+HM P R+ F+ Y+ V  G+VLM ++   ++AGIG V +K 
Sbjct: 203 -----AQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKM 257

Query: 490 ESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNL 314
             G   TL +VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NL
Sbjct: 258 FDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANL 317

Query: 313 YVCNTESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFC 134
           Y     +   +    S +   SD T+LWH RLGHMS  GL  L K G      +  + FC
Sbjct: 318 YHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFC 377

Query: 133 DSCVLGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
           + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA
Sbjct: 378 EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPA 412


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  174 bits (442), Expect = 3e-41
 Identities = 100/271 (36%), Positives = 145/271 (53%), Gaps = 1/271 (0%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNCPKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPK 650
            CYNC + GH+ R+CP  K+ +  ++ Q ND    A    +   V ++ +  + ++    +
Sbjct: 233  CYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTE 292

Query: 649  STCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALT 470
            S  +W++D+A ++H TP R+LF  Y     G+V M N   SKIAGIGD+C K   G  L 
Sbjct: 293  S--EWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLV 350

Query: 469  LKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCNTESE 290
            LK+VRHVPDL  NLIS  AL+ DG E  +     ++ KG LVI K   +  LY  N E  
Sbjct: 351  LKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLYRTNAE-- 408

Query: 289  HESYVHNSVNSV-QSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGK 113
                    +N+  + +  DLWHKR+GH S KGL+IL K       K + +  C+  + GK
Sbjct: 409  ---ICQGELNAAHEENSADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGK 465

Query: 112  HSRVKFPVSPFPNQSICFDILEYLHADVWGP 20
              RV F  S         +IL+ +++DV GP
Sbjct: 466  QHRVSFQTSSERKS----NILDLVYSDVCGP 492


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  172 bits (437), Expect = 1e-40
 Identities = 100/286 (34%), Positives = 149/286 (52%), Gaps = 15/286 (5%)
 Frame = -3

Query: 829 CYNCGEHGHYIRNC--------------PKGKQNQNFNNYQSNDQANMASTSGSTGDVFM 692
           C  C   GH I  C              PKGK+       +   +A + +   S  ++ +
Sbjct: 53  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKK-------EDEGKAAVVTDEKSDAELLV 105

Query: 691 VYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGI 512
            Y  C        +++ QW++D+ACT+HM P R+ F+ Y+ V  G+VLM ++   ++AGI
Sbjct: 106 AYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGI 158

Query: 511 GDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKA 332
           G V +K   G   TL +VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA
Sbjct: 159 GTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKA 218

Query: 331 E-KKRNLYVCNTESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDK 155
           + K  NLY     +   +    S +   SD T+LWH RLGHMS  GL  L   G      
Sbjct: 219 DIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQS 278

Query: 154 LSCMPFCDSCVLGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
           +  + FC+ C+ GKH RVKF  S    +     IL+Y+H+D+WGPA
Sbjct: 279 IGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPA 320


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  172 bits (437), Expect = 1e-40
 Identities = 100/286 (34%), Positives = 149/286 (52%), Gaps = 15/286 (5%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNC--------------PKGKQNQNFNNYQSNDQANMASTSGSTGDVFM 692
            C  C   GH I  C              PKGK+       +   +A + +   S  ++ +
Sbjct: 221  CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKK-------EDEGKAAVVTDEKSDAELLV 273

Query: 691  VYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGI 512
             Y  C        +++ QW++D+ACT+HM P R+ F+ Y+ V  G+VLM ++   ++AGI
Sbjct: 274  AYAGC-------AQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGI 326

Query: 511  GDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKA 332
            G V +K   G   TL +VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA
Sbjct: 327  GTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKA 386

Query: 331  E-KKRNLYVCNTESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDK 155
            + K  NLY     +   +    S +   SD T+LWH RLGHMS  GL  L   G      
Sbjct: 387  DIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQS 446

Query: 154  LSCMPFCDSCVLGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
            +  + FC+ C+ GKH RVKF  S    +     IL+Y+H+D+WGPA
Sbjct: 447  IGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPA 488


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  172 bits (435), Expect = 2e-40
 Identities = 97/265 (36%), Positives = 147/265 (55%), Gaps = 1/265 (0%)
 Frame = -3

Query: 808 GHYIRNCPKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLI 629
           G Y+   PKGK+ +         +A + +   S  ++ + Y  C        +++ QW++
Sbjct: 92  GKYV---PKGKKEEE-------GKAAVVTDEKSDAELLVAYAGC-------AQTSDQWIL 134

Query: 628 DSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHV 449
           D+ACT+HM P R+ F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+
Sbjct: 135 DTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHI 194

Query: 448 PDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNTESEHESYVH 272
           P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +   
Sbjct: 195 PNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAA 254

Query: 271 NSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSRVKFP 92
            S +   SD T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GKH RVKF 
Sbjct: 255 VSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFN 314

Query: 91  VSPFPNQSICFDILEYLHADVWGPA 17
            S    +     IL+Y+H+D+WGPA
Sbjct: 315 TSTHTTEG----ILDYVHSDLWGPA 335


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  172 bits (435), Expect = 2e-40
 Identities = 97/265 (36%), Positives = 147/265 (55%), Gaps = 1/265 (0%)
 Frame = -3

Query: 808 GHYIRNCPKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLI 629
           G Y+   PKGK+ +         +A + +   S  ++ + Y  C        +++ QW++
Sbjct: 92  GKYV---PKGKKEEE-------GKAAVVTDEKSDAELLVAYAGC-------AQTSDQWIL 134

Query: 628 DSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHV 449
           D+ACT+HM P R+ F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+
Sbjct: 135 DTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHI 194

Query: 448 PDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNTESEHESYVH 272
           P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +   
Sbjct: 195 PNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAA 254

Query: 271 NSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSRVKFP 92
            S +   SD T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GKH RVKF 
Sbjct: 255 VSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFN 314

Query: 91  VSPFPNQSICFDILEYLHADVWGPA 17
            S    +     IL+Y+H+D+WGPA
Sbjct: 315 TSTHTTEG----ILDYVHSDLWGPA 335


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score =  171 bits (433), Expect = 3e-40
 Identities = 99/279 (35%), Positives = 152/279 (54%), Gaps = 4/279 (1%)
 Frame = -3

Query: 829 CYNCGEHGHYIRNCPKGKQNQNFNNYQSNDQANMASTSGST--GDVFMVYDLCDYVNFVS 656
           C  C +  H+I  C K    QN    +S+ +A++ +++ ++  GD  +V+ +C       
Sbjct: 131 CKYCKKKNHFIEECWK---LQNKEKRKSDGKASVVTSADNSDSGDCLVVFVVC------- 180

Query: 655 PKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGY 479
             S  +W++D+ C+FH+   R+ FS+YK V NG V+ M ++   +I GIG V +K   G 
Sbjct: 181 VSSHDEWILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGM 240

Query: 478 ALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCN 302
             TLK+VRH+P +  NLIS + L+ +G +     GV+K+ KG+LV    +    NLYV  
Sbjct: 241 TRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLR 300

Query: 301 TESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCV 122
             + H       V+  +  KT++WH RLGHMS  G+  L K           M FC+ CV
Sbjct: 301 GSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCV 360

Query: 121 LGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPASEPT 5
            GKH RVKF  S    +     IL+Y+HAD+WGP+ +P+
Sbjct: 361 FGKHKRVKFNTSVHRTKG----ILDYVHADLWGPSRKPS 395


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  171 bits (433), Expect = 3e-40
 Identities = 102/279 (36%), Positives = 152/279 (54%), Gaps = 4/279 (1%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNCPKGKQNQNFNNYQSNDQANMASTS--GSTGDVFMVYDLCDYVNFVS 656
            C  C +  H+I  C K    QN    +S+ +A++ +++    +GD  +V+    YV    
Sbjct: 236  CKYCKKKNHFIEECWK---LQNKEKRKSDGKASVVTSAENSDSGDCLVVF--AGYV---- 286

Query: 655  PKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGY 479
              S  +W++D+AC+FH+   R+ FS+YK V N  V+ M ++   +I GIG V +K   G 
Sbjct: 287  -ASHDEWILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGM 345

Query: 478  ALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCN 302
              TLK+VRH+P +  NLIS + L+ +G +     GV+K+ KG+LV    +    NLYV  
Sbjct: 346  TRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLR 405

Query: 301  TESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCV 122
              + H S    +V   +  KT+LWH RLGHMS  G+  L K           M FC+ CV
Sbjct: 406  GSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCV 465

Query: 121  LGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPASEPT 5
             GKH RVKF  S    +     IL+Y+HAD+WGP+ +P+
Sbjct: 466  FGKHKRVKFNTSVHRTKG----ILDYVHADLWGPSRKPS 500


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  171 bits (432), Expect = 4e-40
 Identities = 100/287 (34%), Positives = 148/287 (51%), Gaps = 16/287 (5%)
 Frame = -3

Query: 829 CYNCGEHGHYIRNC--------------PKGKQNQNFNNYQSNDQANMASTSGSTGDVFM 692
           C  C   GH I +C              PKGKQ +         +A +A+ +    ++ +
Sbjct: 178 CKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQ-------GKAAVATDNKPDAELLV 230

Query: 691 VYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGI 512
            Y  C        +++ +WL+D+ CT+HM P R+ F+ Y+ V  G+VLM +    K+AG+
Sbjct: 231 AYAGC-------VQTSDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGV 283

Query: 511 GDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKA 332
           G + +K   G   TL +VRH+P L  NLIS + L+  G     G G++K+ KG+LV+ KA
Sbjct: 284 GTIQIKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKA 343

Query: 331 E-KKRNLYVCNTESEHESYVHNSVNSVQS-DKTDLWHKRLGHMSAKGLEILQKNGYFGKD 158
           + K  +LY      +  + V N      S   +DLWH RLGHMS  GL  L K G     
Sbjct: 344 DIKNADLY----HLQGTTIVGNVAAVTDSLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQ 399

Query: 157 KLSCMPFCDSCVLGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
            +  + FC+ C+ GKH RVKF  S    +     IL+Y+H+D+WGPA
Sbjct: 400 NIGKLKFCEHCIFGKHKRVKFTTSTHTTEG----ILDYVHSDLWGPA 442


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  171 bits (432), Expect = 4e-40
 Identities = 93/256 (36%), Positives = 142/256 (55%), Gaps = 1/256 (0%)
 Frame = -3

Query: 781 GKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPKSTCQWLIDSACTFHMT 602
           G Q+      +   +A + +   S  ++ + Y  C        +++ QW++D+ACT+HM 
Sbjct: 225 GDQSPEAGKKEEEGKAAVVTDEKSDAELLVAYVGC-------AQTSDQWILDTACTYHMC 277

Query: 601 PFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLIS 422
           P R+ F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+P+L  +LIS
Sbjct: 278 PNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLIS 337

Query: 421 CAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNTESEHESYVHNSVNSVQSD 245
              L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +    S +   SD
Sbjct: 338 FCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD 397

Query: 244 KTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSRVKFPVSPFPNQSI 65
            T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GKH RVKF  S    +  
Sbjct: 398 ATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEG- 456

Query: 64  CFDILEYLHADVWGPA 17
              IL+Y+H+D+WGPA
Sbjct: 457 ---ILDYVHSDLWGPA 469


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  171 bits (432), Expect = 4e-40
 Identities = 99/269 (36%), Positives = 152/269 (56%), Gaps = 1/269 (0%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNCPKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDYVNFVSPK 650
            CYNCG+ GH  ++C   K++   ++  S  Q  +ASTS   G+V  +Y           +
Sbjct: 230  CYNCGKRGHLKKDCWSNKKSGEKSSEASTSQGCVASTSDD-GEV--LYSEAAVSTKGKNR 286

Query: 649  STCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALT 470
             T  W++DS  T+HMTP R+ F  Y+ V  G+V M N+   +I GIG V +K   G   T
Sbjct: 287  LTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRT 346

Query: 469  LKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAEK-KRNLYVCNTES 293
            L+ VRHV +L  NL+S   L+D G +     G++K++KG+LV+ KA+K   NLY+   ++
Sbjct: 347  LQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDT 406

Query: 292  EHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGK 113
               +    +V S Q + T +WH+RLGHMS +GL++L +       K   +PFC+ CV+ K
Sbjct: 407  WQMADASVAVGS-QEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISK 465

Query: 112  HSRVKFPVSPFPNQSICFDILEYLHADVW 26
              R+KF  S   ++     IL+ +H+DVW
Sbjct: 466  QHRLKFAKSTARSK----HILDLIHSDVW 490


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  170 bits (430), Expect = 8e-40
 Identities = 99/286 (34%), Positives = 149/286 (52%), Gaps = 15/286 (5%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNC--------------PKGKQNQNFNNYQSNDQANMASTSGSTGDVFM 692
            C  C   GH I  C              PKGK+ +         +A + +   S  ++ +
Sbjct: 271  CKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEE-------GKAAVVTDEKSDTELLV 323

Query: 691  VYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGI 512
             Y  C        +++ QW++D+A T+HM P R+ F+ Y+ +  G+VLM ++   ++AGI
Sbjct: 324  AYAGC-------AQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGI 376

Query: 511  GDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKA 332
            G V +K   GY  TL +VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA
Sbjct: 377  GTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 436

Query: 331  E-KKRNLYVCNTESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDK 155
            + K  NLY     +   +    S +   SD T+LWH RLGHMS  GL  L K        
Sbjct: 437  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQS 496

Query: 154  LSCMPFCDSCVLGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
            +  + FC+ C+ GKH RVKF  S    +     IL+Y+H+D+WGPA
Sbjct: 497  IGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPA 538


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  170 bits (430), Expect = 8e-40
 Identities = 99/286 (34%), Positives = 149/286 (52%), Gaps = 15/286 (5%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNC--------------PKGKQNQNFNNYQSNDQANMASTSGSTGDVFM 692
            C  C   GH I  C              PKGK+ +         +A + +   S  ++ +
Sbjct: 271  CKYCKRDGHDISECWKLQDKDKRTGKYIPKGKKEEE-------GKAAVVTDEKSDTELLV 323

Query: 691  VYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGI 512
             Y  C        +++ QW++D+A T+HM P R+ F+ Y+ +  G+VLM ++   ++AGI
Sbjct: 324  AYAGC-------AQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGI 376

Query: 511  GDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKA 332
            G V +K   GY  TL +VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA
Sbjct: 377  GTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 436

Query: 331  E-KKRNLYVCNTESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDK 155
            + K  NLY     +   +    S +   SD T+LWH RLGHMS  GL  L K        
Sbjct: 437  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQS 496

Query: 154  LSCMPFCDSCVLGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
            +  + FC+ C+ GKH RVKF  S    +     IL+Y+H+D+WGPA
Sbjct: 497  IGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPA 538


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  169 bits (428), Expect = 1e-39
 Identities = 100/275 (36%), Positives = 149/275 (54%), Gaps = 4/275 (1%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNCPKGKQNQNFNNYQSNDQANMASTS--GSTGDVFMVYDLCDYVNFVS 656
            C  C +  H+I  C K    QN    +S+ +A++ +++    +GD  +V+  C       
Sbjct: 236  CKYCKKKNHFIEECWK---LQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGC------- 285

Query: 655  PKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGY 479
              S  +W++D+AC+FH+   R+ FS+YK V NG V+ M ++   +I GIG V +K   G 
Sbjct: 286  VASHDEWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGM 345

Query: 478  ALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCN 302
              TLK+VRH+P +  NLIS + L+ +G +     GV+K+ KG+LV    +    NLYV  
Sbjct: 346  TRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLR 405

Query: 301  TESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCV 122
              + H S    +V+  +  KT+LWH RLGHMS  G+  L K           M FC+ CV
Sbjct: 406  GSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCV 465

Query: 121  LGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
             GKH RVKF  S    +     IL+Y+H D+WGP+
Sbjct: 466  FGKHKRVKFNTSVHRTKG----ILDYVHTDLWGPS 496


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  168 bits (426), Expect = 2e-39
 Identities = 98/286 (34%), Positives = 149/286 (52%), Gaps = 15/286 (5%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNC--------------PKGKQNQNFNNYQSNDQANMASTSGSTGDVFM 692
            C  C   GH I  C              PKGK+ +         +A + +   S  ++ +
Sbjct: 443  CKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEE-------GKAAVVTDEKSDAELLV 495

Query: 691  VYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGI 512
             Y  C        +++ QW++++AC +HM P R+ F+ Y+ V  G+VLM ++   ++AGI
Sbjct: 496  AYAGC-------AQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGI 548

Query: 511  GDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKA 332
            G V +K   G   TL +VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA
Sbjct: 549  GTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 608

Query: 331  E-KKRNLYVCNTESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDK 155
            + K  NLY     +   +    S +   SD T+LWH RLGHM+  GL  L K G      
Sbjct: 609  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQS 668

Query: 154  LSCMPFCDSCVLGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
            +  + FC+ C+ GKH RVKF  S    +     IL+Y+H+D+WGPA
Sbjct: 669  IGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPA 710


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  168 bits (426), Expect = 2e-39
 Identities = 98/286 (34%), Positives = 149/286 (52%), Gaps = 15/286 (5%)
 Frame = -3

Query: 829  CYNCGEHGHYIRNC--------------PKGKQNQNFNNYQSNDQANMASTSGSTGDVFM 692
            C  C   GH I  C              PKGK+ +         +A + +   S  ++ +
Sbjct: 236  CKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEE-------GKAAVVTDEKSDAELLV 288

Query: 691  VYDLCDYVNFVSPKSTCQWLIDSACTFHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGI 512
             Y  C        +++ QW++++AC +HM P R+ F+ Y+ V  G+VLM ++   ++AGI
Sbjct: 289  AYAGC-------AQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGI 341

Query: 511  GDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGRWGKGVMKILKGNLVIFKA 332
            G V +K   G   TL +VRH+P+L  +LIS   L+  G +   G G++K+ KG+LV+ KA
Sbjct: 342  GTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 401

Query: 331  E-KKRNLYVCNTESEHESYVHNSVNSVQSDKTDLWHKRLGHMSAKGLEILQKNGYFGKDK 155
            + K  NLY     +   +    S +   SD T+LWH RLGHM+  GL  L K G      
Sbjct: 402  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQS 461

Query: 154  LSCMPFCDSCVLGKHSRVKFPVSPFPNQSICFDILEYLHADVWGPA 17
            +  + FC+ C+ GKH RVKF  S    +     IL+Y+H+D+WGPA
Sbjct: 462  IGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPA 503