BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00002491
         (3405 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...  1040   0.0  
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...  1028   0.0  
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]    1019   0.0  
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...  1008   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...  1005   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           997   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   979   0.0  
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   974   0.0  
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   966   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     960   0.0  
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     949   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        942   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              931   0.0  
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              929   0.0  
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              925   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              921   0.0  
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  919   0.0  
gb|AFB73911.1| polyprotein [Citrus sinensis]                          910   0.0  
gb|AFB73912.1| polyprotein [Citrus sinensis]                          908   0.0  
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   898   0.0  

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 1040 bits (2689), Expect = 0.0
 Identities = 536/965 (55%), Positives = 681/965 (70%), Gaps = 8/965 (0%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAAK 3221
            L+SKG   + +DGVL+   GS +++KG+ R  LY+ QG+TV G+A VA S   ++ +  K
Sbjct: 354  LDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQK-DMTK 412

Query: 3220 LWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDY 3041
            LWH+RLGH GE+ +Q L+K+ LL   KV  L+FCEHCV GK  R KF  AIH T+G LDY
Sbjct: 413  LWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDY 472

Query: 3040 VHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRK 2861
            +HSD WGP +  SLGG  +FV+ IDD+SR  WVY MK K E    F +WK  +ENQTG+K
Sbjct: 473  IHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKK 532

Query: 2860 IKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNA 2681
            IK LRTDNG E+    F + C   GI RH TVR TPQQNGVAERMN+TL+E+ RCMLSNA
Sbjct: 533  IKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNA 592

Query: 2680 GLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKES 2501
            GL R+ WAEAV+ A +LINR P + I  KTP+E+WSGK   DY +L+ FG   YYHV E 
Sbjct: 593  GLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGK-AADYSNLKAFGCTAYYHVSEG 651

Query: 2500 KLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQV 2321
            KLEPRAK+ +F+G   GVKG+R+W    K+++ SR+V FDE  +L+T+    T S    +
Sbjct: 652  KLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETGSL 711

Query: 2320 ERTPKQVEVEEMAIIPAKND--NPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRRE-IH 2150
            +   KQVE +   +I  ++D   P  ED     E ++    P D  + IA  RPRR  + 
Sbjct: 712  D---KQVEFQ---VIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVR 765

Query: 2149 KPAR--FADMVAYALPV---IDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKV 1985
             P R  F DMV YAL V   +D   P T++EA+ S +SEKW  AM +EM+SL KN+TW +
Sbjct: 766  PPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDL 825

Query: 1984 TQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSI 1805
               P G+K I CKWVF KK+G      V+YKAR+VA+G+ Q+EG+DYNE+FSPVV+H+SI
Sbjct: 826  VIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSI 885

Query: 1804 RIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLK 1625
            R+              LDVKTAFLHG+LEEEIYMTQP+GF+V GKEN VCKL KSLYGLK
Sbjct: 886  RVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLK 945

Query: 1624 QSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLEIDK 1445
            QSPRQWYKRFD +M+   YTRS YD CVY  +L D+SFIYL+LYVDDMLIA++ + +I K
Sbjct: 946  QSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQK 1005

Query: 1444 LKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKHVST 1265
            LK  L+ EFEMKDLG A+KILGMEI RDR   KL L+Q+ Y++KVL RFGM+ ++K + T
Sbjct: 1006 LKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMS-SSKPIDT 1064

Query: 1264 PLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDP 1085
            P A ++ L+A  +P+++EE++YM +VPYA+AVGSLMYAMVCTRPD++ AVSVVSR+M  P
Sbjct: 1065 PSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQP 1124

Query: 1084 GKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGYLFTL 905
            G+ HW AVK I RY+  T DVGL++  D +    + GY DSDYAGD+D RRS TGY+FTL
Sbjct: 1125 GREHWQAVKRIFRYLRGTSDVGLIYGGDTQC--LVTGYSDSDYAGDVDTRRSMTGYVFTL 1182

Query: 904  AKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDSQSA 725
              + VSWK+TLQ TV LSTTEAEYMA++EA KE IWL+ L+ DLG+      V+CDS SA
Sbjct: 1183 GGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSA 1242

Query: 724  IHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVKFKHCL 545
            I LAK+QV H RTKHIDVRYHF+R    E  I ++K+ T +NPADM TK V   KF+HCL
Sbjct: 1243 ICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTKPVPQSKFQHCL 1299

Query: 544  YLINI 530
             L+NI
Sbjct: 1300 DLLNI 1304


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score = 1028 bits (2658), Expect = 0.0
 Identities = 538/969 (55%), Positives = 675/969 (69%), Gaps = 14/969 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKESEA 3227
            L+ KG   +  DG+LK T GSLVV+K  I+  NLY+ +G T++G  AAV+DS +   S+A
Sbjct: 582  LDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSN--SDA 639

Query: 3226 AKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGIL 3047
              LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TEGIL
Sbjct: 640  TNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGIL 699

Query: 3046 DYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTG 2867
            DYVHSD+WGP++  S GG  Y +T +DD+SR+VW Y +K K +   +F +WKT +E QT 
Sbjct: 700  DYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTE 759

Query: 2866 RKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLS 2687
            RK+K+LRTDNG E+ S  F+  C   GIVRH+TV  TPQQNGVAERMNRT++ K RC+LS
Sbjct: 760  RKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLS 819

Query: 2686 NAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVK 2507
            NAGL +Q WAEAV+ A +LINR PS AI  KTP+EVWSG P  +Y  LRVFG   Y HV 
Sbjct: 820  NAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP-ANYSDLRVFGCTAYAHVD 878

Query: 2506 ESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-----KTVTSEKT 2342
              KLEPRA + +F+G  SGVKGY+LWC E+KK++ SR+V F E  ML       V  E  
Sbjct: 879  NGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQ 938

Query: 2341 DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPR 2162
            + A  QVE         E   +    D PV E    D    +  Q P      IA  RP+
Sbjct: 939  EKASVQVEHLISSGHAPEKEDVAINQDEPVIE----DSNSSIVQQSP---KRSIAKDRPK 991

Query: 2161 REIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQSLQK 2003
            R I  P R+   A++VAYAL V ++      P T+ EA+ S +  +W  AM +EM+SL+K
Sbjct: 992  RNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEK 1051

Query: 2002 NKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPV 1823
            N TW++ +LPK KK I CKW+F +K+G  + ++ RYKARL+AKGY+Q  GID+N+VFSPV
Sbjct: 1052 NHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPV 1111

Query: 1822 VKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIK 1643
            VKHSSIR               +DVKTAFLHG+LEE+IYM QP+GF V GKEN VC+L K
Sbjct: 1112 VKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKK 1171

Query: 1642 SLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQS 1463
            SLYGLKQSPRQWYKRFD FM+ QK+ RS YD CVYL K+ D S IYLLLYVDDMLIA++ 
Sbjct: 1172 SLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKD 1230

Query: 1462 QLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTEN 1283
            + EI KLKAQL+ EFEMKDLG AKKILGMEI+R R S KL L+QK Y++KVL+RF M  +
Sbjct: 1231 KSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRRFNM-HD 1289

Query: 1282 TKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVS 1103
             K VSTPLA H +LS+ L P++D + +YM +VPY++AVGSLMYAMVC+RPD+S A+SVVS
Sbjct: 1290 AKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVS 1349

Query: 1102 RYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTT 923
            RYM +PGK HW AV+WI RY+  T    L F   G+   G+VGY DSD+AGDLD+ RS  
Sbjct: 1350 RYMANPGKEHWKAVQWIFRYLRGTSSACLQF---GRSRDGLVGYVDSDFAGDLDRGRSLA 1406

Query: 922  GYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVH 743
            GY+FT+    VSWK++LQ+TVALSTTEAEYMA+SEA KEAIWL+ L   L      I + 
Sbjct: 1407 GYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIF 1466

Query: 742  CDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSV 563
            CDSQSAI L K+Q+ H RTKHIDVRYHF+R ++ EG++ + KI   +NPADM+TK V + 
Sbjct: 1467 CDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPAT 1526

Query: 562  KFKHCLYLI 536
            KF+ C  L+
Sbjct: 1527 KFELCSSLV 1535


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 1019 bits (2634), Expect = 0.0
 Identities = 533/969 (55%), Positives = 678/969 (69%), Gaps = 12/969 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGT-AAVADSRNEKESEA 3227
            L+ KG   +  DG+LK T GSLVV+K  I+  NLY+ +G T++G  AAV+DS +   S+A
Sbjct: 284  LDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSN--SDA 341

Query: 3226 AKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGIL 3047
              LWHMRLGH  E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TEGIL
Sbjct: 342  TNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGIL 401

Query: 3046 DYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTG 2867
            DYVHSD+WGP++  S GG  Y +T +DD+SR+VW Y +K K +   +F +WKT +E QT 
Sbjct: 402  DYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTE 461

Query: 2866 RKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLS 2687
            RK+K+LRTDNG E  S  F+  C   GIVRH+TV  TPQQNGVAERMNRT++ K RCMLS
Sbjct: 462  RKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLS 521

Query: 2686 NAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVK 2507
            NA L +Q WAEAV+ A +LINR PS AI  KTP+EVWSG P  +Y  LRVFG   Y HV 
Sbjct: 522  NASLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSP-ANYSDLRVFGCTAYAHVD 580

Query: 2506 ESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQ 2327
              KLEPR  + +F+G  SGVKGY+LWC E+KK++ SR+V F E  ML    S  T+  ++
Sbjct: 581  NGKLEPRVIKCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPS--TNVPVE 638

Query: 2326 QVERTPKQVE-VEEMAIIPAKNDNPVTED--LSDDDEEEVQTQKPLDQSEPIAVRRPRRE 2156
              E+   QVE +      P K D  + +D  + +D +  +  Q P      IA  RP+R 
Sbjct: 639  SQEKVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSP---KRSIAKDRPKRN 695

Query: 2155 IHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQSLQKNK 1997
               P R+   A++VAYAL V ++      P T+ +A+ S +  +W  AM +EM+SL+KN 
Sbjct: 696  TKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNH 755

Query: 1996 TWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVK 1817
            +W++ +LPK KK I CKW+F +K+G    ++ RYKARLVAKGY+Q  GID+N+VFSPVVK
Sbjct: 756  SWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVK 815

Query: 1816 HSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSL 1637
            HSSIR               +DVKTAFLHG+LEE+IYM QPEGF V GKEN VC+L KSL
Sbjct: 816  HSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSL 875

Query: 1636 YGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQL 1457
            YGLKQSPRQWYKRFD FM+ QK+ RS YD CVYL K+ D S IYLLLYVDDMLIA++ + 
Sbjct: 876  YGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKS 934

Query: 1456 EIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTK 1277
            EI KLKAQL+ EFEMKDLG AKKILGMEI+R+R SGKL L+QK Y++KVL RF M  + K
Sbjct: 935  EIAKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNM-HDAK 993

Query: 1276 HVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRY 1097
             VST LA H +LS+ L P++  + +YM +VPY++AV SLMYAMVC+RPD+S A+SVVSRY
Sbjct: 994  LVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRY 1053

Query: 1096 MHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGY 917
            M +PGK HW AV+WI RY+  T    L F   G+   G+VGY DSD+AGDLD+RRS TGY
Sbjct: 1054 MANPGKEHWKAVQWIFRYLRGTSSACLQF---GRSSDGLVGYVDSDFAGDLDRRRSLTGY 1110

Query: 916  LFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCD 737
            +FT+    VSWK++LQ+TVALSTTEAEYMA+SEA KE IWL+ L  +L      I + CD
Sbjct: 1111 VFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCD 1170

Query: 736  SQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVKF 557
            SQSAI L K+Q+ H RTKHID+RYHF+R ++ EG++ + KI T +NP DM+TK V + KF
Sbjct: 1171 SQSAICLTKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKF 1230

Query: 556  KHCLYLINI 530
            + C  L+ +
Sbjct: 1231 ELCSSLVGV 1239


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1008 bits (2607), Expect = 0.0
 Identities = 521/975 (53%), Positives = 667/975 (68%), Gaps = 17/975 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGTAAVADSRNEKESEAA 3224
            L+++G   +  DGVLK + GSLV +KG +    LY  +G T+ G+ + A +    E    
Sbjct: 366  LDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKT 425

Query: 3223 KLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILD 3044
             LWHMRLGH     +  L K+ LLK     K+ FCEHC+ GK KRV+F T++H T+G LD
Sbjct: 426  NLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLD 485

Query: 3043 YVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGR 2864
            YVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K KD+    F  WK  IE QT R
Sbjct: 486  YVHADLWGPSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTER 545

Query: 2863 KIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSN 2684
            K+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQNGVAERMNRT++ + RCMLS+
Sbjct: 546  KVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSH 605

Query: 2683 AGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKE 2504
            A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  DY  L+VFG   Y HV  
Sbjct: 606  ARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMP-ADYSQLKVFGCTAYAHVDN 664

Query: 2503 SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-KTVTSEKTDSALQ 2327
             KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E  M   ++ SE      +
Sbjct: 665  GKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPE--K 722

Query: 2326 QVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEVQTQKPLDQSE---PIAVR 2171
            +++R   QVE  +    + + P    +    D++DDD  ++VQ   P+ Q E   PIA R
Sbjct: 723  ELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQR 782

Query: 2170 RPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQS 2012
            + +R    P R     ++  YAL   +       P T++EAVR  +SE W  AM EEMQS
Sbjct: 783  KSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQS 842

Query: 2011 LQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVF 1832
            L+KN TW+V  LPK KK I CKW+F +K+G  +    +YKARLVA+GY+Q  G+DYN+VF
Sbjct: 843  LEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVF 902

Query: 1831 SPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCK 1652
            SPVVKHSSIR               LDVKTAFLHG+LEE+IYM QPEGF V GKE +VCK
Sbjct: 903  SPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCK 962

Query: 1651 LIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIA 1472
            L +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY++ + + S IYLLLYVDDMLIA
Sbjct: 963  LKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIA 1021

Query: 1471 SQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGM 1292
            ++S++EI KLK  L+ EF+MKDLG AKKILGMEISRDR SG L L+Q  Y+KKVLQRF M
Sbjct: 1022 AKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM 1081

Query: 1291 TENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVS 1112
             +N K VSTP+APH KLSA   P  D E +YM +VPY++AVGSLMYAMVC+RPD+S A+S
Sbjct: 1082 -QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140

Query: 1111 VVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRR 932
            +VSRYM +PGK HW AV+WI RY+  T    L F   G+  +G++GY DSDYA DLD+RR
Sbjct: 1141 LVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRRR 1197

Query: 931  STTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHI 752
            S TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L  +L   +  I
Sbjct: 1198 SLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCI 1257

Query: 751  IVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVV 572
             +HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + + KI T +NPADM+TK +
Sbjct: 1258 SLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPI 1317

Query: 571  TSVKFKHCLYLINIL 527
               KF+ C  L+ ++
Sbjct: 1318 PVAKFELCSSLVGLI 1332


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score = 1005 bits (2598), Expect = 0.0
 Identities = 519/975 (53%), Positives = 665/975 (68%), Gaps = 17/975 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGTAAVADSRNEKESEAA 3224
            L+++G   +  DGVLK + GSLV +KG +    LY  +G T+ G+ + A +    E    
Sbjct: 366  LDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKT 425

Query: 3223 KLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILD 3044
             LWHMRLGH     +  L K+ LLK     K+ FCEHC+ GK KRV+F T++H T+G LD
Sbjct: 426  NLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLD 485

Query: 3043 YVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGR 2864
            YVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K KD+    F  WK  IE QT R
Sbjct: 486  YVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTER 545

Query: 2863 KIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSN 2684
            K+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQNGVAERMNRT++ + RCMLS+
Sbjct: 546  KVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSH 605

Query: 2683 AGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKE 2504
            A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  DY  L+VFG   Y HV  
Sbjct: 606  ARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP-ADYSQLKVFGCTAYAHVDN 664

Query: 2503 SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-KTVTSEKTDSALQ 2327
             KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E  M   ++ SE      +
Sbjct: 665  GKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPE--K 722

Query: 2326 QVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEVQTQKPLDQSE---PIAVR 2171
            +++R   QVE  +    + + P    +    D++DDD  ++VQ   P+ Q E   PIA R
Sbjct: 723  ELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQR 782

Query: 2170 RPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQS 2012
            + +R    P R     ++  YAL   +       P T++EAVR  +SE W  AM EEMQS
Sbjct: 783  KSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQS 842

Query: 2011 LQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVF 1832
            L+KN TW+V  LPK KK I CKW+F +K+G  +    +YKARLVA+GY+Q  G+DYN+VF
Sbjct: 843  LEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVF 902

Query: 1831 SPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCK 1652
            SPVVKHSSIR               LDVKTAFLHG+LEE+IYM QPEGF V GKE +VCK
Sbjct: 903  SPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCK 962

Query: 1651 LIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIA 1472
            L +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY++ + + S IYLLLYVDDMLIA
Sbjct: 963  LKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIA 1021

Query: 1471 SQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGM 1292
            ++S++EI KLK  L+ EF+MKDLG AKKIL MEISRDR SG L L+Q  Y+KKVLQRF M
Sbjct: 1022 AKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQRFNM 1081

Query: 1291 TENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVS 1112
             +N K VSTP+APH KLSA   P  D E +YM +VPY++AVGSLMYAMVC+RPD+S A+S
Sbjct: 1082 -QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140

Query: 1111 VVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRR 932
            +VSRYM +PGK HW  V+WI RY+  T    L F   G+  +G++GY DSDYA DLD+RR
Sbjct: 1141 LVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRRR 1197

Query: 931  STTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHI 752
            S TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L  +L   +  I
Sbjct: 1198 SLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCI 1257

Query: 751  IVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVV 572
             +HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + + KI T +NPADM+TK +
Sbjct: 1258 SLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPI 1317

Query: 571  TSVKFKHCLYLINIL 527
               KF+ C  L+ ++
Sbjct: 1318 PVAKFELCSSLVGLI 1332


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  997 bits (2578), Expect = 0.0
 Identities = 517/975 (53%), Positives = 663/975 (68%), Gaps = 17/975 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGTAAVADSRNEKESEAA 3224
            L+++G   +  DGVLK + GSLV +KG +    LY  +G T+ G+ + A +    E    
Sbjct: 368  LDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKT 427

Query: 3223 KLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILD 3044
             LWHMRLGH     +  L K+ LLK     K+ FCEHC+ GK KRV+F T++H T+G LD
Sbjct: 428  NLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLD 487

Query: 3043 YVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGR 2864
            YVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K KD+    F  WK  IE QT R
Sbjct: 488  YVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTER 547

Query: 2863 KIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSN 2684
            K+K+L TDNGGE+ S  F + C + GIVRH T+  TPQQNGVAERMNRT++ + RCMLS+
Sbjct: 548  KVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSH 607

Query: 2683 AGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKE 2504
            A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  DY  L+VFG   Y HV  
Sbjct: 608  ARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP-ADYSQLKVFGCTAYAHVDN 666

Query: 2503 SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-KTVTSEKTDSALQ 2327
             KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E  M   ++ SE      +
Sbjct: 667  GKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPE--K 724

Query: 2326 QVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEVQTQKPLDQSE---PIAVR 2171
            +++R   QVE  +    + + P    +    D++DDD  ++VQ   P+ Q E    IA R
Sbjct: 725  ELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDDAHDDVQQTPPILQLEEDLSIAQR 784

Query: 2170 RPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQS 2012
            + +R    P R     ++  YAL   +       P T++EAVR  +SE W  AM EEMQS
Sbjct: 785  KSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQS 844

Query: 2011 LQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVF 1832
            L+KN TW+V  LPK KK I CKW+F +K+        +YKARLVA+GY+Q  G+DYN+VF
Sbjct: 845  LEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYNDVF 904

Query: 1831 SPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCK 1652
            SPVVKHSSIR               LDVKTAFLHG+LEE+IYM QPEGF V GKE +VCK
Sbjct: 905  SPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCK 964

Query: 1651 LIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIA 1472
            L +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY++ + + S IYLLLYVDDMLIA
Sbjct: 965  LKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIA 1023

Query: 1471 SQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGM 1292
            ++S++EI KLK  L+ EF+MKDLG AKKILGMEISRDR SG L L+Q  Y+KKVLQRF M
Sbjct: 1024 AKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM 1083

Query: 1291 TENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVS 1112
             +N K VSTP+APH KLSA   P  D E +YM +VPY++AVGSLMYAMVC+RPD+S A+S
Sbjct: 1084 -QNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1142

Query: 1111 VVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRR 932
            +VSRYM +PGK HW A++WI RY+  T    L F   G+  +G++GY DSDYA DLD+RR
Sbjct: 1143 LVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRRR 1199

Query: 931  STTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHI 752
            S TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L  +L   +  I
Sbjct: 1200 SLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCI 1259

Query: 751  IVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVV 572
             +HCDSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + + KI T +NPADM+TK +
Sbjct: 1260 SLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPI 1319

Query: 571  TSVKFKHCLYLINIL 527
               KF+ C  L+ ++
Sbjct: 1320 PVAKFELCSSLVGLI 1334


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  979 bits (2530), Expect = 0.0
 Identities = 506/943 (53%), Positives = 646/943 (68%), Gaps = 17/943 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGTAAVADSRNEKESEAA 3224
            L+++G   +  DGVLK + GSLV +KG +    LY  +G T+ G+ + A +    E    
Sbjct: 366  LDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKT 425

Query: 3223 KLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILD 3044
             LWHMRLGH     +  L K+ LLK     K+ FCEHC+ GK KRV+F T++H T+G LD
Sbjct: 426  NLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLD 485

Query: 3043 YVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGR 2864
            YVH+D+WGPSK PSLGG  Y +T IDD+SR+VW Y +K KD+    F  WK  IE QT R
Sbjct: 486  YVHADLWGPSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTER 545

Query: 2863 KIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSN 2684
            K+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQNGVAERMNRT++ + RCMLS+
Sbjct: 546  KVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSH 605

Query: 2683 AGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKE 2504
            A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  DY  L+VFG   Y HV  
Sbjct: 606  ARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP-ADYSQLKVFGCTAYAHVDN 664

Query: 2503 SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-KTVTSEKTDSALQ 2327
             KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E  M   ++ SE      +
Sbjct: 665  GKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEHVPE--K 722

Query: 2326 QVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEVQTQKPLDQSE---PIAVR 2171
            +++R   QVE  +    + + P    +    D++DDD  ++VQ   P+ Q E   PIA R
Sbjct: 723  ELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEELPIAQR 782

Query: 2170 RPRREIHKPARF---ADMVAYALPVIDD----DVPFTFREAVRSPESEKWKGAMEEEMQS 2012
            + +R    P R     ++  YAL   +       P T++EAVR  +SE W  AM EEMQS
Sbjct: 783  KSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQS 842

Query: 2011 LQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVF 1832
            L+KN TW+V  LPK KK I CKW+F +K+G  +    +YKARLVA+GY+Q  G+DYN+VF
Sbjct: 843  LEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYNDVF 902

Query: 1831 SPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCK 1652
            SPVVKHSSIR               LDVKTAFLHG+LEE+IYM QPEGF V GKE +VCK
Sbjct: 903  SPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCK 962

Query: 1651 LIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIA 1472
            L +SLYGLKQSPRQW KRFD FM+   + RSKYD CVY++ + + S IYLLLYVDDMLIA
Sbjct: 963  LKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIA 1021

Query: 1471 SQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGM 1292
            ++S++EI KLK  L+ EF+MKDLG AKKILGMEISRDR SG L L+Q  Y+KKVLQRF M
Sbjct: 1022 AKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM 1081

Query: 1291 TENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVS 1112
             +N K VSTP+APH KLSA   P  D E +YM +VPY++AVGSLMYAMVC+RPD+S A+S
Sbjct: 1082 -QNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMS 1140

Query: 1111 VVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRR 932
            +VSRYM +PGK HW AV+WI RY+  T    L F   G+  +G++GY DSDYA DLD+RR
Sbjct: 1141 LVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRRR 1197

Query: 931  STTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHI 752
            S TGY+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L  +L   +  I
Sbjct: 1198 SLTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCI 1257

Query: 751  IVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILL 623
             +HCDS+SAI+L K+Q+ H RTKHID++YHFVR+++EE + L+
Sbjct: 1258 SLHCDSESAIYLTKDQMFHERTKHIDIKYHFVRDVIEEDDWLI 1300


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  974 bits (2518), Expect = 0.0
 Identities = 511/974 (52%), Positives = 660/974 (67%), Gaps = 20/974 (2%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAAK 3221
            L+  G   +   GVL+ + G+LVV+KG  ++ +Y   G++V+GTAAV      +E    +
Sbjct: 693  LDKNGYTFSGSGGVLRVSKGALVVMKGRLQHGIYTLMGSSVLGTAAV------EEDNCTE 746

Query: 3220 LWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDY 3041
            LWH RLGH  EK L  L+KQGLL   +  KL FCE CV+GKQ+RVKF    H T G+L+Y
Sbjct: 747  LWHRRLGHMSEKGLSILSKQGLLSGAETGKLKFCETCVMGKQRRVKFSMGSHTTNGVLEY 806

Query: 3040 VHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRK 2861
            +HSD+WGPS   S  G  Y+VTFIDDFSR+VWVY +K KDEV G F +WKT +E +TG+ 
Sbjct: 807  IHSDLWGPSPVESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKV 866

Query: 2860 IKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNA 2681
            +K LRTDNG E+ +  F E C K GIVRH TVR TPQQNGVAERMN+TLV++ RCM  +A
Sbjct: 867  VKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDA 926

Query: 2680 GLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKES 2501
            GL ++ WAEAV  A +L+NR PS+AI  KTP EVWSGKP ++Y  L++FG   Y HV + 
Sbjct: 927  GLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKP-SNYSGLKIFGCPAYAHVSDG 985

Query: 2500 KLEPRAKRALFMGITSGVKGYRLWCLESK--KILFSRDVTFDEHAML-------KTVTSE 2348
            KLEPRA + +F+G  +GVKGYRLWC E +  K + SRDVTFDE AM            + 
Sbjct: 986  KLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTS 1045

Query: 2347 KTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRR 2168
            KTD    Q      +VE E    + A  +N V      DD  E Q     + S+ IA  R
Sbjct: 1046 KTDLGANQ------KVEFE----VDAPMENGV------DDTSEEQPVIDQNDSQSIAAXR 1089

Query: 2167 PRREIHKPARFADM--------VAYALPVIDD---DVPFTFREAVRSPESEKWKGAMEEE 2021
            PRREI +P R+ D         VA+AL V ++   + P +++EA+ S +S+KW  +M++E
Sbjct: 1090 PRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDE 1149

Query: 2020 MQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYN 1841
            M SL+KN+TW++  LP+G K + CKW+F  KDG       +YK+RLVAK           
Sbjct: 1150 MASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDEPPKYKSRLVAK----------- 1198

Query: 1840 EVFSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENW 1661
             VFSPVVKH SIR+              LDVKTAFLHG+LEEEIYM QPEGF  + K + 
Sbjct: 1199 -VFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDH 1257

Query: 1660 VCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDM 1481
            VC L KSLYGLKQSPRQWYKRFD FM+  ++ R++YD CVY + L D SFIYLLLYVDDM
Sbjct: 1258 VCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDM 1317

Query: 1480 LIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQR 1301
            LIA++++ EI+KLK  L+ EFEMKDLG AKKILGMEI RDR +G L ++Q++Y++K++Q 
Sbjct: 1318 LIAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAGLLYVSQQKYIEKLMQA 1377

Query: 1300 FGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQ 1121
            F M +++K VSTPLA H K      P  DEE +YM  VPY++ VGSLMYAMVCTRPD++ 
Sbjct: 1378 FHM-DHSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAF 1436

Query: 1120 AVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLD 941
            AVSVVSR+M +PGK HW AVKWI+RY+  +  V LV+  +G +  G+VG+ DSD+ GDL 
Sbjct: 1437 AVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVY-GNGDVSSGLVGFTDSDHGGDLM 1495

Query: 940  KRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQ 761
            KRRS T Y+FTL    +SW+++LQ TVALSTTEAEYM+++E VKE +WL   L  LG+  
Sbjct: 1496 KRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSLTEGVKEGMWLNGFLGSLGLNL 1555

Query: 760  KHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLT 581
               +++CDSQSA+ LAKN V H RTKHIDVR +F+R+++EE    +EK+ T  NPADMLT
Sbjct: 1556 SKPVIYCDSQSALCLAKNPVYHERTKHIDVRLNFIRDVIEEKLFSIEKVATEVNPADMLT 1615

Query: 580  KVVTSVKFKHCLYL 539
            K +T+ KFKH L L
Sbjct: 1616 KPITTEKFKHSLGL 1629


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  966 bits (2498), Expect = 0.0
 Identities = 508/968 (52%), Positives = 651/968 (67%), Gaps = 10/968 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGTAAVADSRNEKESEAA 3224
            L+++G   +   GV+K + GSLV + G +   NLY  +G+T+ G+   A    ++ S+  
Sbjct: 368  LDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKT- 426

Query: 3223 KLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILD 3044
             LWHMRLGH  E  +  L K+ LL       + FCEHCV GK KRVKF T++H T+GILD
Sbjct: 427  NLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILD 486

Query: 3043 YVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGR 2864
            YVH+D+WGPS+ PSLGG  Y +T IDD+SR+ W Y +K KD+    F + K  IE QT +
Sbjct: 487  YVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEK 546

Query: 2863 KIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSN 2684
            ++KVL TDNGGE+ SD F + C K GIVRH T+  TPQQNGVAERMNRT++ K RCMLSN
Sbjct: 547  EVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARCMLSN 606

Query: 2683 AGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKE 2504
            A + ++ WAEA   A +LINR PS  +  KTP+E+WSG P  DY  LRVFG   Y HV  
Sbjct: 607  ARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMP-ADYSQLRVFGCTAYAHVDN 665

Query: 2503 SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQ 2324
             KLEPRA + LF+G  SGVKGY+LW  E+ K   SR+V F+E  M               
Sbjct: 666  GKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVMFNDSLPTDVIPGGSD 725

Query: 2323 VERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPL--DQSEPIAVRRPRREIH 2150
             E+    V+VE +       D+  TE + +D  + VQ    +   Q EPIA RR +R   
Sbjct: 726  EEQQYVSVQVEHV-------DDQETEIVGNDVNDTVQHSPSVLQPQDEPIAHRRTKRSCG 778

Query: 2149 KPARF---ADMV----AYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTW 1991
             P R     DMV    +YA  V +   P T+ EAV S + EKW  A++EEMQSL+KN TW
Sbjct: 779  APVRLIEECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTW 838

Query: 1990 KVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVKHS 1811
            ++  LPK KK + CKW+F +K+G       R+K RLVAKG++Q  G+DYN+VFSPVVKHS
Sbjct: 839  ELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKHS 898

Query: 1810 SIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYG 1631
            SIR               LDVKT FLHG+LEEEIYM QPEGF V GKE++VCKL +SLYG
Sbjct: 899  SIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYG 958

Query: 1630 LKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLEI 1451
            LKQSPRQWYKRFD FM+   + RS++D CVY+ K  + S IYLLLYVDDMLIA++S+ +I
Sbjct: 959  LKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYI-KFVNGSPIYLLLYVDDMLIAAKSKEQI 1017

Query: 1450 DKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKHV 1271
              LK QL+ EF+MKDLG AKKILGMEI+RDR SG L L+Q+ Y+KKVLQRF M  + K V
Sbjct: 1018 TTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNM-HDAKPV 1076

Query: 1270 STPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMH 1091
            STP+APH KLSA      DE+ +YM +VPY++AVGSLMYAMVC+ PD+S A+S+VSRYM 
Sbjct: 1077 STPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMA 1136

Query: 1090 DPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGYLF 911
            +PGK HW AV+WI RY+  T D  L F   G++ +G+VGY DSD+A DLDKRRS TGY+F
Sbjct: 1137 NPGKEHWKAVQWIFRYLRGTADACLKF---GRIDKGLVGYVDSDFAADLDKRRSLTGYVF 1193

Query: 910  TLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDSQ 731
            T+    VSWK+TLQ  VA STTEAEYMA++EA KE++WL+ L  +L      I + CDSQ
Sbjct: 1194 TIGSCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQ 1253

Query: 730  SAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVKFKH 551
            SAI L K+Q+ H RTKHID++YH+VR+I+ +G + + KI   +NPADM+TK +   KF+ 
Sbjct: 1254 SAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFEL 1313

Query: 550  CLYLINIL 527
            C  L+ I+
Sbjct: 1314 CSSLVGIV 1321


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  960 bits (2481), Expect = 0.0
 Identities = 501/957 (52%), Positives = 652/957 (68%), Gaps = 19/957 (1%)
 Frame = -3

Query: 3370 RDGVLKATSGSLVVIKG-IRRNNLYYYQGNTVIGTAAVADSRNEKESEAAKLWHMRLGHA 3194
            ++GVLK   G +V +KG I+ +N+Y   G+TV G A V       E +  +LW  RLGH 
Sbjct: 348  QNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVEGGAGVCT-----EEDKTELWRRRLGHM 402

Query: 3193 GEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFG--TAIHNTEGILDYVHSDVWG 3020
             ++ LQ L K+  L  V    L+FC +C LGKQ RV F   ++ + ++G+LDY+H+DVWG
Sbjct: 403  SQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIHTDVWG 462

Query: 3019 PSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTD 2840
            PS T S GG  YFV+FIDDFSR+VW++ MKTK+EV   F +WK  + NQTGRKIK LR+D
Sbjct: 463  PSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSD 522

Query: 2839 NGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHW 2660
            NGGEY    F ++C   GI RHFTV+++PQQNGVAERMNRTL+EK R M  +AGL  + W
Sbjct: 523  NGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEEFW 582

Query: 2659 AEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHV---KESKLEP 2489
            AEA  +A +LINR PS AI  K   EVWSGKPV DY +LRVFG   Y H+   + +KLEP
Sbjct: 583  AEAANHACYLINRSPSRAINFKCAEEVWSGKPV-DYSNLRVFGCSAYAHIPKDERTKLEP 641

Query: 2488 RAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKT----DSALQQV 2321
            ++   LF+G   GVKGY+LW + ++K + SRDV FDE   +    ++ +    ++ ++Q 
Sbjct: 642  KSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVVFDEREAISISLAKPSVADSEAQVEQN 701

Query: 2320 ERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQT----QKPLDQSEPIAVRRPRREI 2153
            E+   +V +EE    P     P      +   +  Q     Q P      IA+ +P+R  
Sbjct: 702  EQGNDEVAIEE----PEHQQQPTVMAQVEQSPQRGQNSPIPQAPESFKRSIALDKPKRNR 757

Query: 2152 HKPARFA----DMVAYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKV 1985
                RF     + V+ AL +   D P T+ +A+ S ES  W GAM EEM+SL KN  W++
Sbjct: 758  KPIQRFGFEPEEDVSRALSISQGD-PTTYEDAIESVESAGWIGAMTEEMESLHKNSVWEL 816

Query: 1984 TQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSI 1805
               PK +K +GCKWVF KK+G    + + YKARLVAKGY+QKEG+DY+E+FSPVVKH+SI
Sbjct: 817  VPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSI 876

Query: 1804 RIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLK 1625
            R+              +DVKTAFLHGDLEE+IYM+QPEGF   GKEN VC+L KSLYGLK
Sbjct: 877  RLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLK 936

Query: 1624 QSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLEIDK 1445
            QSPRQWYK FD +M+   YTR +YD CVY    +D   I LLLYVDDMLIA +  L+I K
Sbjct: 937  QSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQK 996

Query: 1444 LKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKHVST 1265
            LK +L  EF+MKDLG A+KILG+EI RDR +GK+ L+Q++Y+ K+L+RF M E  K VS 
Sbjct: 997  LKKKLGAEFDMKDLGAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAE-AKVVSI 1055

Query: 1264 PLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDP 1085
            PLA H +LSA+  P + +E D M  VPYA+AVG LMYAM+CTRPD++QA+SVVS+YM +P
Sbjct: 1056 PLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNP 1115

Query: 1084 GKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQG-IVGYCDSDYAGDLDKRRSTTGYLFT 908
            GK HW AVKWI +Y+ NT  +G++FE+  + G+  + G+ DSD+AGDLD+RRST GY+FT
Sbjct: 1116 GKRHWEAVKWIFKYLKNTRQLGIMFER--RQGEACVAGFVDSDFAGDLDRRRSTAGYVFT 1173

Query: 907  LAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDSQS 728
                PVSWK+TLQ+  ALSTTEAEYMA++EA KEAIWL  L   LGV Q+ ++V CDSQS
Sbjct: 1174 CGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQS 1233

Query: 727  AIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVKF 557
            AIHLAKNQV HARTKHID RYH +R+ +E G I++EK+HT +N AD LTK V+  K+
Sbjct: 1234 AIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVEKY 1290


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  949 bits (2454), Expect = 0.0
 Identities = 500/898 (55%), Positives = 629/898 (70%), Gaps = 12/898 (1%)
 Frame = -3

Query: 3364 GVLKATSGSLVVIK-GIRRNNLYYYQGNTVIGT-AAVADSRNEKESEAAKLWHMRLGHAG 3191
            G+LK T GSLVV+K  I+  NLY+ +G T++G  AAV DS +   S+A  LWHMRLGH  
Sbjct: 359  GILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSN--SDATNLWHMRLGHMS 416

Query: 3190 EKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDYVHSDVWGPSK 3011
            E  L  L+K+GLL    + KL FCEHC+ GK KRVKF T+ H TEGILDYVHSD+WGP+ 
Sbjct: 417  EIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAH 476

Query: 3010 TPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGRKIKVLRTDNGG 2831
              S GG  Y +T +DD+SR+VW Y +K K +    F +WKT +E QT RK+K+LRTDNG 
Sbjct: 477  KTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQTERKVKILRTDNGM 536

Query: 2830 EYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSNAGLGRQHWAEA 2651
            E+ S  F+  C   GIV H+T   TPQQN VAERMNRT++ K RCMLSNAGL +Q WAEA
Sbjct: 537  EFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWAEA 596

Query: 2650 VTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKESKLEPRAKRAL 2471
            V+ A +LINR P  AI  KTP+EVWSG P T+Y  LRVFG   Y HV   KLEPRA + +
Sbjct: 597  VSTACYLINRSPGYAIDKKTPIEVWSGSP-TNYSDLRVFGCTAYAHVDNGKLEPRAIKCI 655

Query: 2470 FMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSALQQVERTPKQVE-V 2294
            F+G  SGVKGY+LWC E+KK++ SR+V F E  +L    S  T+  ++  E+   QVE +
Sbjct: 656  FLGYASGVKGYKLWCPETKKVVISRNVVFHESVILHDKPS--TNVPVESQEKASVQVEHL 713

Query: 2293 EEMAIIPAKNDNPVTED--LSDDDEEEVQTQKPLDQSEPIAVRRPRREIHKPARF---AD 2129
                  P K D  + +D  + +D +  +  Q P      IA  +P+R I  P R+   A 
Sbjct: 714  ISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSP---KRSIAKDKPKRNIKPPRRYIEEAK 770

Query: 2128 MVAYALPVID----DDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKK 1961
            +VAYAL V +    +  P T+ EA+ S +  +W  AM +EM+SL+KN TW++ +LPK KK
Sbjct: 771  IVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKK 830

Query: 1960 AIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXX 1781
             I CKW+F +K+G    ++ RYKARLVAKGY+Q  GID+N+VFSPVVKHSSIR       
Sbjct: 831  PIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVA 890

Query: 1780 XXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYK 1601
                    ++VKTAFLHG+LEE+IYM QPEGF V GKEN VC+L KSLYGLKQSPRQWYK
Sbjct: 891  MHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYK 950

Query: 1600 RFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLEIDKLKAQLNQE 1421
            RFD FM+ QK+  S YD CVYL K+ D S IYLLLYVDDMLIA++ + EI+KLKAQL+ E
Sbjct: 951  RFDSFMLSQKFRISNYDSCVYL-KVVDGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSE 1009

Query: 1420 FEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKHVSTPLAPHLKL 1241
            FEMKDLG AKKILGMEI+R+R SGKL L+QK Y++KVL+RF M  + K VSTPLA H +L
Sbjct: 1010 FEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKVLRRFNM-HDAKPVSTPLAAHFRL 1068

Query: 1240 SAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWHAV 1061
            S+ L P +D + +YM +VPY++AVGSLMYAMVC RPD+S A+SVV+RYM +PGK HW AV
Sbjct: 1069 SSDLCPLSDYDIEYMSRVPYSSAVGSLMYAMVCCRPDLSHALSVVNRYMANPGKEHWKAV 1128

Query: 1060 KWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWK 881
            +WI RY+  T    L FE+      G+VGY DSD+AGDLD+RRS TGY+FT+    VSWK
Sbjct: 1129 QWIFRYLRGTSSACLQFERS---RDGLVGYVDSDFAGDLDRRRSITGYVFTIGGCAVSWK 1185

Query: 880  STLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDSQSAIHLAKN 707
            ++LQ+TVALSTTEAEYMA+ EA KEAIWL+ L  +L      I + CDSQSAI+L K+
Sbjct: 1186 ASLQATVALSTTEAEYMAIFEACKEAIWLRGLYTELCGVTSCINIFCDSQSAIYLTKD 1243


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  942 bits (2434), Expect = 0.0
 Identities = 488/976 (50%), Positives = 656/976 (67%), Gaps = 18/976 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVI---GTAAVADSRNEKESE 3230
            L+S G     R G L+   G+ +V+KG+  N LY  QG++V    G +AV+      E +
Sbjct: 368  LDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVPVQEGVSAVS------EED 421

Query: 3229 AAKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGI 3050
              KLWH+RLGH   K LQ L+KQGLL   ++ +L+FCE+C+ GK  R KF    H ++ +
Sbjct: 422  RTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHMSKQV 481

Query: 3049 LDYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQT 2870
            LDY H D WGP++ PSL G  YF++ IDD+SR+VW+Y +K KD+ L  F  WK+ +ENQ+
Sbjct: 482  LDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQS 541

Query: 2869 GRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCML 2690
              K+K LRTDNG E+ S  F+E C K+GI RH TVR TPQQNG+AERMNRTLV+K RCML
Sbjct: 542  DFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCML 601

Query: 2689 SNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHV 2510
             N+ L R  WAEAV  A +L+NR PSSAIG KTP E+W+GKP  +Y +LRVFG   Y H+
Sbjct: 602  INSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPA-NYQNLRVFGCPAYLHI 660

Query: 2509 KESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSAL 2330
             + KLE RA + +F+G   GVKGY++WC +  K + SRDV F E  +LK   S + D+ L
Sbjct: 661  NQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVFHESVLLKE--SAEHDAGL 718

Query: 2329 QQVERTPKQVEVEEMAI-IPAKNDNPVTEDLSDDDEEEVQTQKPLDQSE---------PI 2180
            Q      K+   E   + +    D    ++ + DDE      +  + SE          +
Sbjct: 719  QDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDERATAESEEHEVSELPQADLQNYQL 778

Query: 2179 AVRRPRREIHKPARF--ADMVAYALPVIDD---DVPFTFREAVRSPESEKWKGAMEEEMQ 2015
            A  R RRE+  P R+  AD++AYAL   D+   + P  F EA+ S   +KW  AM++EM+
Sbjct: 779  ARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEME 838

Query: 2014 SLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEV 1835
            SLQ+N+TW +   P  K+ I CKW+F + +G P+    +YKARLVA+G+ Q+EG+D+NE+
Sbjct: 839  SLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEI 898

Query: 1834 FSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVC 1655
            FSPVVKHSSIRI              +DVKTAFLHG+LEE+I M QPEGF+   KE++VC
Sbjct: 899  FSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVC 958

Query: 1654 KLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLI 1475
             L KSLYGLKQSPRQWY+RFD FM+ + Y RS+YD CVY          YLLLYVDDMLI
Sbjct: 959  LLHKSLYGLKQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLI 1018

Query: 1474 ASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFG 1295
            AS+ + EI++LK  L  EFEMKDLG AK+ILGM+I RDR++G L L+Q +Y+KKVL+RF 
Sbjct: 1019 ASKYKSEIERLKNLLKAEFEMKDLGNAKRILGMDIIRDRSAGTLFLSQGKYIKKVLERFE 1078

Query: 1294 MTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAV 1115
            M ++ K V TPL P  KLSA  +    E+   M++ PYA AVGSLMYAMVCTR DI+ AV
Sbjct: 1079 M-QDCKPVQTPLGPQFKLSAATT---SEDESQMNEFPYAQAVGSLMYAMVCTRSDIAYAV 1134

Query: 1114 SVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKR 935
            SVVSRY+  PGK HW+AVKWI+RY+  +   GL++ +       ++G+ DSD+AGDLD+R
Sbjct: 1135 SVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDKIEVMGFVDSDFAGDLDRR 1194

Query: 934  RSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKH 755
            +ST+ Y+F L    +SWKS+LQS  ALS+TEAE++A +EAVKEA+WL+ LL +L + QK 
Sbjct: 1195 KSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVKEAMWLRGLLNELWLNQKI 1254

Query: 754  IIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKV 575
            + V CD+Q+AIHL KNQ+ H RTKHIDV+  F+R+ + +G +++ KIHT+ NPAD LTK 
Sbjct: 1255 VQVFCDNQNAIHLVKNQMYHERTKHIDVKLQFIRDEVGKGTVVVSKIHTSVNPADALTKS 1314

Query: 574  VTSVKFKHCLYLINIL 527
            + + KF+ C+ L+ I+
Sbjct: 1315 LPTAKFEFCVNLMGIM 1330


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  931 bits (2406), Expect = 0.0
 Identities = 498/971 (51%), Positives = 654/971 (67%), Gaps = 13/971 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNTVI-GTAAVADSRNEKESEA 3227
            L+  G  +    G+LK   G+LVV+K  +  +NLY   G+T+    A+VA +  E   E 
Sbjct: 366  LDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQE---ET 422

Query: 3226 AKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGIL 3047
              +WH RLGH  E+ L+ L ++ LL  +K   L FCEHCV+ KQ R+KF      ++ IL
Sbjct: 423  TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHIL 482

Query: 3046 DYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTG 2867
            D +HSDVW  S   SLGG  YFV+FIDD+SRR+WVY +K K +V  +F  +K +IE +TG
Sbjct: 483  DLIHSDVW-ESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETG 541

Query: 2866 RKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLS 2687
            +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAERMNRTL+E+ R ML 
Sbjct: 542  KKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLK 601

Query: 2686 NAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVY--YH 2513
             AG+ +  WAEAV  A ++INR PS+AI  KTP+E+W GKPV DY SL VFG  VY  Y+
Sbjct: 602  TAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPVYVMYN 660

Query: 2512 VKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKT-- 2342
             +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E+ +     ++ T  
Sbjct: 661  SQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSKQKNDSTSK 720

Query: 2341 DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPR 2162
            ++A+ Q+E   K+ +  E          PV E+   DD                 VRR  
Sbjct: 721  ETAIVQMEEKSKESDSSEA--------EPVHEEQEPDDVNN-------------GVRRST 759

Query: 2161 REIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNK 1997
            R+  KP+  +D V     AY L + ++  P TF EA+   ++ +W  AM EEM++L +NK
Sbjct: 760  RQTQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNK 818

Query: 1996 TWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVV 1820
            TW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSPVV
Sbjct: 819  TWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSPVV 876

Query: 1819 KHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKS 1640
            + ++IR+              LDVKTAFLHG+LEEEIYM QPEGFK  GKEN VC+L KS
Sbjct: 877  RLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKS 936

Query: 1639 LYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQ 1460
            LYGLKQ+PR WYKRFD F++   Y+R   DHC Y ++     FI LLLYVDDML+   ++
Sbjct: 937  LYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNK 996

Query: 1459 LEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENT 1280
              + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ 
Sbjct: 997  DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM-QDC 1055

Query: 1279 KHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 1100
            K +STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR
Sbjct: 1056 KPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSR 1115

Query: 1099 YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 920
            +M DPGK HW+AVK I+RYI  T  V + F   G     + GY DSD+AGD DKR+STTG
Sbjct: 1116 FMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGYVDSDFAGDHDKRKSTTG 1172

Query: 919  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHC 740
            Y+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L+E+LG  Q+ I V+C
Sbjct: 1173 YVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 739  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVK 560
            DSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD +TK + + K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDK 1292

Query: 559  FKHCLYLINIL 527
            F  C  L  +L
Sbjct: 1293 FIWCRSLYGLL 1303


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  929 bits (2400), Expect = 0.0
 Identities = 497/962 (51%), Positives = 657/962 (68%), Gaps = 11/962 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNTVI-GTAAVADSRNEKESEA 3227
            L+  G  +    G+LK   G+LVV+K  +  +NLY   G+T+    A+VA S  E   E 
Sbjct: 366  LDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAASSQE---ET 422

Query: 3226 AKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGIL 3047
              +WH RLGH  E+ L+ LA++ LL  +K   L FCEHCV+ KQ R+KF      ++ IL
Sbjct: 423  TMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKHIL 482

Query: 3046 DYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTG 2867
            D +HSDVW  S   SLGG  YFV+FIDD+SRR+WVY +K K +V  +F  +K +IE +T 
Sbjct: 483  DLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETR 541

Query: 2866 RKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLS 2687
            +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAERMNRTL+E+ R ML 
Sbjct: 542  KKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLK 601

Query: 2686 NAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVY--YH 2513
             AG+ +  WAEAV  A ++INR PS+AI  KTP+E+W GKPV DY SL VFG  VY  Y+
Sbjct: 602  TAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPVYVMYN 660

Query: 2512 VKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDS 2336
             +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E+ +    + +K DS
Sbjct: 661  SQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQ---SEQKNDS 717

Query: 2335 ALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRRE 2156
                   T K+  + +M     ++D+   E + ++       Q+P D ++   VRR  R+
Sbjct: 718  -------TSKETAIVQMEEKSKESDSSEAESVHEE-------QEPDDVND--GVRRSTRQ 761

Query: 2155 IHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTW 1991
              KP+  +D V     AY L + ++  P TF EA+   ++ +W  AM EEM++L +NKTW
Sbjct: 762  TQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTW 820

Query: 1990 KVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVKH 1814
            ++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSPVV+ 
Sbjct: 821  ELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRL 878

Query: 1813 SSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 1634
            ++IR+              LDVKTAFLHG+LEEEIYM QPEGFK  GKEN VC+L KSLY
Sbjct: 879  TTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLY 938

Query: 1633 GLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLE 1454
            GLKQ+PR WYKRFD F++   Y+R   DHC Y ++     FI LLLYVDDML+   ++  
Sbjct: 939  GLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDR 998

Query: 1453 IDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKH 1274
            + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ K 
Sbjct: 999  VQELKAQLAREFDMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNM-QDCKP 1057

Query: 1273 VSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYM 1094
            +STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR+M
Sbjct: 1058 ISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFM 1117

Query: 1093 HDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGYL 914
             DPGK HW+AVK I+RYI  T  V + F   G     + GY DSD+AGD DKR+STTGY+
Sbjct: 1118 ADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGYVDSDFAGDHDKRKSTTGYV 1174

Query: 913  FTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDS 734
            FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L+E+LG  Q+ I V+CDS
Sbjct: 1175 FTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDS 1234

Query: 733  QSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVKFK 554
            QSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD++TK + + KF 
Sbjct: 1235 QSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFV 1294

Query: 553  HC 548
             C
Sbjct: 1295 WC 1296


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  925 bits (2390), Expect = 0.0
 Identities = 494/962 (51%), Positives = 654/962 (67%), Gaps = 11/962 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNTVI-GTAAVADSRNEKESEA 3227
            L+  G  +    G+LK   G+LVV+K  +  +NLY   G+T+    A+VA +  E   E 
Sbjct: 366  LDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQE---ET 422

Query: 3226 AKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGIL 3047
              +WH RLGH  E+ L+ L ++ LL  +K   L FCEHCV+ KQ R+KF      ++ IL
Sbjct: 423  TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKFARVTTRSKHIL 482

Query: 3046 DYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTG 2867
            D +HSDVW  S   SLGG  YFV+FIDD+SRR+WVY +K K +V  +F  +K +IE +T 
Sbjct: 483  DLIHSDVW-ESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETE 541

Query: 2866 RKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLS 2687
            +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAERMNRTL+E+ R ML 
Sbjct: 542  KKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLK 601

Query: 2686 NAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVY--YH 2513
             AG+ +  WAEA   A ++INR PS+AI  KTP+E+W GKPV DY SL VFG  VY  Y+
Sbjct: 602  TAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPVYVMYN 660

Query: 2512 VKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDS 2336
             +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E+ +    + +K DS
Sbjct: 661  SQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQ---SEQKNDS 717

Query: 2335 ALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRRE 2156
                   T K+  + +M     ++D+   E + ++       Q+P D ++   VRR  R+
Sbjct: 718  -------TSKETAIVQMEEKSKESDSSEAESVHEE-------QEPDDVND--GVRRSTRQ 761

Query: 2155 IHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTW 1991
              KP+  +D V     AY L + ++  P TF EA+   ++ +W  AM EEM++L +NKTW
Sbjct: 762  TQKPSWQSDYVMTSHDAYCL-ITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTW 820

Query: 1990 KVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVKH 1814
            ++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSPVV+ 
Sbjct: 821  ELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRL 878

Query: 1813 SSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 1634
            ++IR+              LDVKTAFLHG+LEEEIYM QPEGFK  GKEN VC+L KSLY
Sbjct: 879  TTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLY 938

Query: 1633 GLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLE 1454
            GLKQ+PR WYKRFD F++   Y R   DHC Y ++     FI LLLYVDDML+   ++  
Sbjct: 939  GLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDR 998

Query: 1453 IDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKH 1274
            + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ K 
Sbjct: 999  VQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM-QDCKP 1057

Query: 1273 VSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYM 1094
            +STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR+M
Sbjct: 1058 ISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFM 1117

Query: 1093 HDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGYL 914
             DPGK HW+AVK I+RYI  T  V + F   G     + GY DSD+AGD DKR+STTGY+
Sbjct: 1118 ADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVWGYVDSDFAGDHDKRKSTTGYV 1174

Query: 913  FTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDS 734
            FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L+E+LG  Q+ I V+CDS
Sbjct: 1175 FTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDS 1234

Query: 733  QSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVKFK 554
            QSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD++TK + + KF 
Sbjct: 1235 QSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINTDKFV 1294

Query: 553  HC 548
             C
Sbjct: 1295 WC 1296


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  921 bits (2380), Expect = 0.0
 Identities = 491/964 (50%), Positives = 651/964 (67%), Gaps = 13/964 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNTVI-GTAAVADSRNEKESEA 3227
            L+  G  +    G+LK   G+LVV+K  +  +NLY   G+T+    A+VA +  E   E 
Sbjct: 366  LDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQE---ET 422

Query: 3226 AKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGIL 3047
              +WH RLGH  E+ L+ L ++ LL  +K   L FCEHCV+ KQ R+KF      ++ IL
Sbjct: 423  TMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHIL 482

Query: 3046 DYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTG 2867
            D +HSDVW   K  SLGG  YFV+FIDD+SRR+WVY +K K +V  +F  +K +IE +TG
Sbjct: 483  DLIHSDVWESPKL-SLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETG 541

Query: 2866 RKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLS 2687
            +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAERMNRTL+E+ R ML 
Sbjct: 542  KKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLK 601

Query: 2686 NAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVY--YH 2513
             A + +  WAEAV  A ++INR PS+ I  KTP+E+W GKPV DY SL VFG  VY  Y+
Sbjct: 602  TAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPV-DYSSLHVFGCPVYVMYN 660

Query: 2512 VKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKT-- 2342
             +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E+ +     ++ T  
Sbjct: 661  SQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTFK 720

Query: 2341 DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPR 2162
            ++A+ Q+E   K+ +                   S + E   + Q+P D +    VRR  
Sbjct: 721  ETAILQIEEKSKESD-------------------SSEAESVHEEQEPDDVNN--GVRRST 759

Query: 2161 REIHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNK 1997
            R+  KP+  +D V     AY L + ++  P TF EA+   ++ +W  A+ EEM++L+KNK
Sbjct: 760  RQTQKPSWQSDYVMTGHDAYCL-IAEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNK 818

Query: 1996 TWKVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVV 1820
            TW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSPVV
Sbjct: 819  TWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSPVV 876

Query: 1819 KHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKS 1640
            + ++IR+              LDVKTAFLHG+LEEEIYM QPEGFK  GKEN VC+L KS
Sbjct: 877  RLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKS 936

Query: 1639 LYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQ 1460
            LYGLKQ+PR WYKRFD F++   Y R   DHC Y ++     FI LLLYVDD+L+   ++
Sbjct: 937  LYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDILVVGPNK 996

Query: 1459 LEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENT 1280
              + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ 
Sbjct: 997  DRVQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM-QDC 1055

Query: 1279 KHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 1100
            K +STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR
Sbjct: 1056 KPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSR 1115

Query: 1099 YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 920
            +M DPGK HW+AVK I+RYI  T  V + F   G     + GY DSD+AGD DKR+STTG
Sbjct: 1116 FMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGYVDSDFAGDHDKRKSTTG 1172

Query: 919  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHC 740
            Y+FTL    VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L+E+LG  Q+ I V+C
Sbjct: 1173 YVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 739  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVK 560
            DSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD++TK + + K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADK 1292

Query: 559  FKHC 548
            F  C
Sbjct: 1293 FVWC 1296


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  919 bits (2376), Expect = 0.0
 Identities = 499/962 (51%), Positives = 647/962 (67%), Gaps = 11/962 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIR-RNNLYYYQGNT-VIGTAAVADSRNEKESEA 3227
            L+  G    ++ G+LK   GSLVV+K  +   NLY   G+T  +  A+VA    E   E 
Sbjct: 366  LDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADASVAVGSQE---ET 422

Query: 3226 AKLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGIL 3047
              +WH RLGH  E+ L+ LA++ L+  +K   L FCEHCV+ KQ R+KF  +   ++ IL
Sbjct: 423  TMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTARSKHIL 482

Query: 3046 DYVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTG 2867
            D +HSDVW  S   S+GG  YFV+FIDD+SRR+WVY +K K  V  +F ++K ++E +TG
Sbjct: 483  DLIHSDVW-ESPEVSIGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKEFKAQVELETG 541

Query: 2866 RKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLS 2687
            ++IK LRTDNGGEYT   F   C + GI R FTV  TPQQNGVAERMNRTL+E+ R ML 
Sbjct: 542  KRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRTLLERTRAMLK 601

Query: 2686 NAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVY--YH 2513
             AGL +  WAEA   A ++INR PS+AIG KTP+E+W GKP  DY SLRVFG  VY  Y+
Sbjct: 602  TAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKP-GDYSSLRVFGCPVYVMYN 660

Query: 2512 VKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDS 2336
             +E +KL+P+++R  F+G    VKGYRLW   ++KI  SRDV F E+ + K    +K D 
Sbjct: 661  SQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVIFVENELQK---EQKNDG 717

Query: 2335 ALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRRE 2156
              ++       VE+EE +           E+   + E E Q    ++ +EP   RR  R+
Sbjct: 718  TTKETAT----VEIEEKS---------GEENSEAEPEHEEQEPNEVNDAEP---RRTTRQ 761

Query: 2155 IHKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTW 1991
            I KP+  ++ V     AY L + +D  P TF EAV   ++  W  AM+EE+++L +N TW
Sbjct: 762  IRKPSWHSEYVMASHDAYCL-LSEDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRNNTW 820

Query: 1990 KVTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVKH 1814
            ++ +LPKG+KAIG KWVF  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSPVV+ 
Sbjct: 821  ELVELPKGRKAIGNKWVFKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRL 878

Query: 1813 SSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 1634
            ++IRI              LDVKTAFLHG+LEEEIYM QPEGF+   +EN VC+L KSLY
Sbjct: 879  TTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKERENLVCRLTKSLY 938

Query: 1633 GLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLE 1454
            GLKQ+PR WYKRFD F+M   Y R   DHC Y ++  D  FI LLLYVDDML+   ++  
Sbjct: 939  GLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFDDGDFIILLLYVDDMLVVGPNKDR 998

Query: 1453 IDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKH 1274
            + +LKAQL +EF+MKDLG A KILGM+I RDR   K+ L+QK YL+KVL+RF M ++   
Sbjct: 999  VQELKAQLAREFDMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNM-QDYNP 1057

Query: 1273 VSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYM 1094
            +STPL  + KLS+ + P ++ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV  VSR+M
Sbjct: 1058 ISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGTVSRFM 1117

Query: 1093 HDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGYL 914
             DPGK HW+AVK ILRYI  T    L F   G     I GY DSD+AGDLDKR+STTGY+
Sbjct: 1118 ADPGKEHWNAVKRILRYIRGTSGAALCF---GGSEFTIRGYVDSDFAGDLDKRKSTTGYV 1174

Query: 913  FTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDS 734
            FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW Q LLE+LG  Q+ I V+CDS
Sbjct: 1175 FTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEELGHKQQKITVYCDS 1234

Query: 733  QSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVKFK 554
             SA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD++TK + S KF 
Sbjct: 1235 PSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTKPINSDKFI 1294

Query: 553  HC 548
             C
Sbjct: 1295 WC 1296


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  910 bits (2352), Expect = 0.0
 Identities = 493/958 (51%), Positives = 646/958 (67%), Gaps = 10/958 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIRRN-NLYYYQGNTVIGTAAVADSRNEKESEAA 3224
            ++S G    + +G++K   G+LV++K  +   NL+  +G T+    A   S  E   E+ 
Sbjct: 367  MDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETLQEADACVASNGE---EST 423

Query: 3223 KLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILD 3044
             +WH++LGH  E+ L+ L+++ LL  +K   L FCEHCV  KQ R+KF  +I  ++ ILD
Sbjct: 424  MMWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILD 483

Query: 3043 YVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGR 2864
             +HSDVW  S   S+GG  Y VTFIDD+SRR WVY +K K +V  +F ++K  +E ++G+
Sbjct: 484  LIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGK 542

Query: 2863 KIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSN 2684
            KIK LRTDNGGEYT   F   C + GI R FTV  TPQQNGVAERMNRTL E++R ML  
Sbjct: 543  KIKCLRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRT 602

Query: 2683 AGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVY--YHV 2510
            AGL    WAEA   A +++NR PS+AIG KT +E+W+GKP  DY  L  FG  +Y  Y+ 
Sbjct: 603  AGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPA-DYSYLHAFGCPMYVMYNA 661

Query: 2509 KE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSA 2333
            +E +KL+ +++R +F+G   GVKGYRLW   + KI+ SRDV F E  + +    + T   
Sbjct: 662  QERTKLDAKSRRCIFLGYADGVKGYRLWDPTAHKIVISRDVIFVEDQLQRKDGDDGT--V 719

Query: 2332 LQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRREI 2153
             ++ E  P  VE           +NP   D S+   E  + Q+P++   P  VRR  RE 
Sbjct: 720  KEKSETVPVYVE-----------NNPENSDSSEAAPEH-EEQEPVESEAP-EVRRSTRER 766

Query: 2152 HKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWK 1988
              P   ++ V     AY L + +D  P TF EA+ S +   W  AM+EE+++L KNKTW+
Sbjct: 767  RPPTWHSEYVTEINVAYCL-LTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWE 825

Query: 1987 VTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVKHS 1811
            +  LP+G+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSPVV+ +
Sbjct: 826  LVPLPRGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLT 883

Query: 1810 SIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYG 1631
            ++RI              LDVKTAFLHG+LEEEIYM QPEGF   GKEN VC+L KSLYG
Sbjct: 884  TVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYG 943

Query: 1630 LKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLEI 1451
            LKQ+PR WYKRFD F+M   Y R   DHC Y ++ +D  FI LLLYVDDML+A  ++  I
Sbjct: 944  LKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRI 1003

Query: 1450 DKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKHV 1271
             +LKAQL +EFEMKDLG A KILGM+I RDR + K+ L+QK YLKK+L+RF M ++ K +
Sbjct: 1004 QELKAQLAREFEMKDLGPANKILGMQIHRDRNNMKIWLSQKNYLKKILRRFNM-QDCKSI 1062

Query: 1270 STPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMH 1091
            ST L  + KLS+ + P N+ ER  M +VPYA+AVGSLM+AM+CTRPDI+QAV VVSRYM 
Sbjct: 1063 STSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMA 1122

Query: 1090 DPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGYLF 911
            +PG  HW AVK ILRYI  T DV L +   G     + GY DSD+AGDLDKR+STTGY+F
Sbjct: 1123 NPGGEHWIAVKRILRYIRGTSDVALCY---GGSEFTVRGYVDSDFAGDLDKRKSTTGYVF 1179

Query: 910  TLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDSQ 731
            TLA A VSW S LQ+ VALSTTEAEYMA ++A K+AIW+Q LLE+LG  Q+ I+V CDSQ
Sbjct: 1180 TLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQRLLEELGHKQQKILVFCDSQ 1239

Query: 730  SAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVKF 557
            SA+H+A+N   H+RTKHI V+YHFVRE++E+G++ L+KIHT EN AD+LTK + + KF
Sbjct: 1240 SALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPINTDKF 1297


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  908 bits (2347), Expect = 0.0
 Identities = 493/958 (51%), Positives = 644/958 (67%), Gaps = 10/958 (1%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIRR-NNLYYYQGNTVIGTAAVADSRNEKESEAA 3224
            ++S G    + +G++K   G+LV++K  +   NL+  +G T+    A   S  E   E+ 
Sbjct: 367  MDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETLQEADACVASNGE---EST 423

Query: 3223 KLWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILD 3044
             +WH++LGH  E+ L+ L+++ L   +K   L FCEHCV  KQ R+KF  +I  ++ ILD
Sbjct: 424  MMWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILD 483

Query: 3043 YVHSDVWGPSKTPSLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGR 2864
             +HSDVW  S   S+GG  Y VTFIDD+SRR WVY +K K +V  +F ++K  +E ++G+
Sbjct: 484  LIHSDVW-ESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGK 542

Query: 2863 KIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSN 2684
            KIK LRTDNGGEYT   F   C + GI R FTV  TPQQNGVAERMNRTL E++R ML  
Sbjct: 543  KIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRT 602

Query: 2683 AGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVY--YHV 2510
            AGL    WAEA   A +++NR PS+AIG KT +E+W+GKP  DY  L  FG  VY  Y+ 
Sbjct: 603  AGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPA-DYSYLHAFGCPVYVMYNA 661

Query: 2509 KE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKTDSA 2333
            +E +KL+P++++ +F+G   GVKGYRLW   + KI+ SRDV F E  + +    + T   
Sbjct: 662  QERTKLDPKSRKCIFLGYADGVKGYRLWDPTAHKIVISRDVIFVEDQLQRKDGDDGT--V 719

Query: 2332 LQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQKPLDQSEPIAVRRPRREI 2153
             ++ E  P  VE           +NP   D S+   E  + Q+P++   P  VRR  RE 
Sbjct: 720  KEKSETVPVYVE-----------NNPENSDSSEAAPEH-EEQEPVESEAP-EVRRSTRER 766

Query: 2152 HKPARFADMV-----AYALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKNKTWK 1988
              P   ++ V     AY L + +D  P TF EA+ S +   W  AM+EE+++L KNKTW+
Sbjct: 767  RPPTWHSEYVTEINVAYCL-LTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWE 825

Query: 1987 VTQLPKGKKAIGCKWVFT-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVVKHS 1811
            +  LP G+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSPVV+ +
Sbjct: 826  LVPLPHGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLT 883

Query: 1810 SIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYG 1631
            ++RI              LDVKTAFLHG+LEEEIYM QPEGF   GKEN VC+L KSLYG
Sbjct: 884  TVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYG 943

Query: 1630 LKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVDDMLIASQSQLEI 1451
            LKQ+PR WYKRFD F+M   Y R   DHC Y ++ +D  FI LLLYVDDML+A  ++  I
Sbjct: 944  LKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRI 1003

Query: 1450 DKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKHV 1271
             +LKAQL +EFEMKDLG A KILGM+I RDR + K+ L+QK YLKK+L+RF M ++ K +
Sbjct: 1004 QELKAQLAREFEMKDLGPANKILGMQIHRDRNNRKIWLSQKNYLKKILRRFNM-QDCKSI 1062

Query: 1270 STPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMH 1091
            STPL  + KLS+ + P N+ ER  M +VPYA+AVGSLM+AM+CTRPDI+QAV  VSRYM 
Sbjct: 1063 STPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGAVSRYMA 1122

Query: 1090 DPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGYLF 911
            +PG  HW AVK ILRYI  T +V L +   G     + GY DSD+AGDLDKR+STTGY+F
Sbjct: 1123 NPGGEHWIAVKRILRYIRGTSNVALCY---GGSEFTVRGYVDSDFAGDLDKRKSTTGYVF 1179

Query: 910  TLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHIIVHCDSQ 731
            TLA A VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+LG  Q+ I V CDSQ
Sbjct: 1180 TLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFCDSQ 1239

Query: 730  SAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSVKF 557
            SA+H+A+N   H+RTKHI V+YHFVRE++E+G++ L+KIHT EN AD+LTK + + KF
Sbjct: 1240 SALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKSINTDKF 1297


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  898 bits (2321), Expect = 0.0
 Identities = 485/979 (49%), Positives = 623/979 (63%), Gaps = 22/979 (2%)
 Frame = -3

Query: 3400 LESKGLIVTLRDGVLKATSGSLVVIKGIRRNNLYYYQGNTVIGTAAVADSRNEKESEAAK 3221
            LE KG     + G+L      L V+ G + + LY+ QG T+ G A V D    KE +   
Sbjct: 387  LEDKGCWFESKKGILTIFKNDLTVLTGKKESTLYFLQGTTLAGEANVID----KEKDETS 442

Query: 3220 LWHMRLGHAGEKSLQTLAKQGLLKDVKVCKLDFCEHCVLGKQKRVKFGTAIHNTEGILDY 3041
            LWH RLGH G K LQ L  +G L                 K   + FG A H T+  LDY
Sbjct: 443  LWHSRLGHIGAKGLQVLVSKGHLD----------------KNIMISFGAAKHVTKDKLDY 486

Query: 3040 VHSDVWGPSKTP-SLGGKHYFVTFIDDFSRRVWVYTMKTKDEVLGIFLKWKTRIENQTGR 2864
            VHSD+WG +  P S+G   YF+TFIDDF+RR W+Y ++TKDE    F++WKT+IENQ  +
Sbjct: 487  VHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRTKDEAFSKFVEWKTQIENQQDK 546

Query: 2863 KIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVRCMLSN 2684
            K+K+L TDNG E+ +  F   C K G++RH T   TPQQNGVAERMNRT++ KVRCMLS 
Sbjct: 547  KLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNRTIMNKVRCMLSE 606

Query: 2683 AGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLVYYHVKE 2504
            +GLG+Q WAEA + A  LIN+ PSS+I    P E W+G P  DY  L+ FGS+ Y H  +
Sbjct: 607  SGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGHP-PDYKILKKFGSVAYIHSDQ 665

Query: 2503 SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSE---KTDSA 2333
             KL PRAK+ +F+G   GVK +++W LE +K + SRD+ F E+ M K +      + D  
Sbjct: 666  GKLNPRAKKGIFLGYPDGVKRFKVWLLEDRKCVVSRDIVFQENQMYKELQKNDMSEEDKQ 725

Query: 2332 LQQVERTPKQVEVEEMAIIPAKN----DNPVTEDLS-------DDDEEEVQTQKPLDQSE 2186
            L +VERT   +E++ ++          DN   E  S       D   EE  +     ++ 
Sbjct: 726  LTEVERT--LIELKNLSADDENQSEGGDNSNQEQASTTRSASKDKQVEETDSDDDCLENY 783

Query: 2185 PIAVRRPRREIHKPARFAD----MVAYALPVIDDDV---PFTFREAVRSPESEKWKGAME 2027
             +A  R RR+I  P RF +    +V +AL + +D     P T+ EA+RSPE EKWK A  
Sbjct: 784  LLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATI 843

Query: 2026 EEMQSLQKNKTWKVTQLPKGKKAIGCKWVFTKKDGFPNKNDVRYKARLVAKGYAQKEGID 1847
            EEM S++KN TW V   P+GK+ IGCKW+F +K G P     RYKARLVAKG++Q+EGID
Sbjct: 844  EEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGID 903

Query: 1846 YNEVFSPVVKHSSIRIXXXXXXXXXXXXXXLDVKTAFLHGDLEEEIYMTQPEGFKVAGKE 1667
            Y E+FSPVVKH SIR               LDVKTAFLHG+L+E I M+QPEG++     
Sbjct: 904  YQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDST 963

Query: 1666 NWVCKLIKSLYGLKQSPRQWYKRFDKFMMGQKYTRSKYDHCVYLRKLQDESFIYLLLYVD 1487
              VC L KSLYGLKQSPRQW +RFD FM+   Y RSKY+ CVY ++L D S+IYLLLYVD
Sbjct: 964  EKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVD 1023

Query: 1486 DMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKILGMEISRDRTSGKLCLTQKQYLKKVL 1307
            DMLIASQ++ +I KLK  LN+EFEMKDLG A+KILGMEI+R+R  G L L+Q +Y+  VL
Sbjct: 1024 DMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNREQGILDLSQSEYVAGVL 1083

Query: 1306 QRFGMTENTKHVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDI 1127
            + FGM + +K   TPL  H KL A        + +YM  VPY NA+GS+MY+M+ +RPD+
Sbjct: 1084 RAFGM-DQSKVSQTPLGAHFKLRAANEKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDL 1142

Query: 1126 SQAVSVVSRYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGD 947
            +  V VVSR+M  P K HW AVKW++RY+  T D  L F++D K    I GYCDSDYA D
Sbjct: 1143 AYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRFKKDDKF--EIRGYCDSDYATD 1200

Query: 946  LDKRRSTTGYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGV 767
            LD+RRS TG++FT     +SWKS LQ  VALSTTEAEYMA++EAVKEAIWL+ L  ++G 
Sbjct: 1201 LDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGF 1260

Query: 766  GQKHIIVHCDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGNILLEKIHTTENPADM 587
             Q  + V CDSQSAI L+KN V H RTKHIDVRYHF+RE + +G I + KI TT NPAD+
Sbjct: 1261 EQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVKISTTWNPADI 1320

Query: 586  LTKVVTSVKFKHCLYLINI 530
             TK V   K +  L L+ +
Sbjct: 1321 FTKTVPVSKLQEALKLLRV 1339