BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00002217
         (1141 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 753   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   750   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   750   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   749   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   746   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   746   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   746   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   746   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   745   0.0  
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   743   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   672   0.0  
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             559   e-157
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   555   e-156
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   510   e-142
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   509   e-141
gb|AFM77886.1| replicase [Hosta virus X]                              501   e-139
ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CA...   501   e-139
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               493   e-137
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   488   e-135
gb|AAF67818.1|AF111193_1 replicase [Potato virus X]                   477   e-132

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  753 bits (1945), Expect = 0.0
 Identities = 364/380 (95%), Positives = 376/380 (98%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAKKDLGDILW NYHKAM LP
Sbjct: 963  DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDILWTNYHKAMNLP 1022

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
            KEQP+FSE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1023 KEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1082

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVL+Y
Sbjct: 1083 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLSY 1142

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI
Sbjct: 1143 WDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1202

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDDCAIAQVCPEKPSFALLK+RIA
Sbjct: 1203 MRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDDCAIAQVCPEKPSFALLKDRIA 1262

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1263 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1322

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGD+L DLLS
Sbjct: 1323 YSLDAKLAYSLGDELHDLLS 1342


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  750 bits (1937), Expect = 0.0
 Identities = 362/380 (95%), Positives = 375/380 (98%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAKKDLGDILW NYH+AM LP
Sbjct: 980  DDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYHRAMGLP 1039

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
            KEQP+FSEDLW RCAEEVQNTYLKK+++Q+KGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1040 KEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1099

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY
Sbjct: 1100 LGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 1159

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI
Sbjct: 1160 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 1219

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA
Sbjct: 1220 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 1279

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI+NV+AN
Sbjct: 1280 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVRDAITNVVAN 1339

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGDDLQDLLS
Sbjct: 1340 YSLDAKLAYSLGDDLQDLLS 1359


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  750 bits (1937), Expect = 0.0
 Identities = 364/380 (95%), Positives = 373/380 (98%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDPTTQLFSHQQAKDEALLWETI ARLTIS PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTISNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 NEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNIMINCEKTPQDLSRWVLNY
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNIMINCEKTPQDLSRWVLNY 1154

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTI 1214

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGDDLQDLLS
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  749 bits (1935), Expect = 0.0
 Identities = 363/380 (95%), Positives = 372/380 (97%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNY
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNY 1154

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGDDLQDLLS
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  746 bits (1927), Expect = 0.0
 Identities = 361/380 (95%), Positives = 371/380 (97%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEH ILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQWVKKMEK 1094

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE+TPQDLSRWVLNY
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCERTPQDLSRWVLNY 1154

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGDDLQDLLS
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  746 bits (1926), Expect = 0.0
 Identities = 362/380 (95%), Positives = 371/380 (97%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN 
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNC 1154

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGDDLQDLLS
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  746 bits (1926), Expect = 0.0
 Identities = 362/380 (95%), Positives = 371/380 (97%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN 
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNC 1154

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGDDLQDLLS
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  746 bits (1926), Expect = 0.0
 Identities = 362/380 (95%), Positives = 371/380 (97%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN 
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNC 1154

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 1334

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGDDLQDLLS
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLS 1354


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  745 bits (1924), Expect = 0.0
 Identities = 361/380 (95%), Positives = 370/380 (97%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 975  DDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYRKAMKLP 1034

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 1035 SEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 1094

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLNY
Sbjct: 1095 LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNY 1154

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF+GTL+I
Sbjct: 1155 WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFMGTLTI 1214

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGP FDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+LLKNRIA
Sbjct: 1215 MRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSLLKNRIA 1274

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+ N
Sbjct: 1275 LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVDN 1334

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGDDLQDLLS
Sbjct: 1335 YSLDAKLAYSLGDDLQDLLS 1354


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 711

 Score =  743 bits (1919), Expect = 0.0
 Identities = 359/380 (94%), Positives = 373/380 (98%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY KAMKLP
Sbjct: 306  DNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRKAMKLP 365

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWVKKMEK
Sbjct: 366  NEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWVKKMEK 425

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSRWVLN+
Sbjct: 426  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSRWVLNH 485

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTL+I
Sbjct: 486  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLTI 545

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LLKNRIA
Sbjct: 546  MRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLLKNRIA 605

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+NV+AN
Sbjct: 606  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAITNVVAN 665

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAKLAYSLGDDLQDLLS
Sbjct: 666  YSLDAKLAYSLGDDLQDLLS 685


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  672 bits (1733), Expect = 0.0
 Identities = 324/380 (85%), Positives = 349/380 (91%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            +D T QLFSHQQAKDEALLWETI ARL +STPEANL EF AKKDLGD+LW NYH+AMKLP
Sbjct: 956  EDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAKKDLGDVLWENYHRAMKLP 1015

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
            KEQP+FS +LW RCA EVQ TYL KS+ QIKGGERRQSPDF E++ILIFLKSQWVKKMEK
Sbjct: 1016 KEQPDFSPELWERCAAEVQQTYLSKSLQQIKGGERRQSPDFPENKILIFLKSQWVKKMEK 1075

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGA KIKPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIMINCE+TP DLSRWV N+
Sbjct: 1076 LGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMINCERTPADLSRWVRNH 1135

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDF+KP YANDFTAFDQSQDGAMLQFEILKAK+FNLPEWVIEGYLDIKL+P+IF GTL+I
Sbjct: 1136 WDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGYLDIKLTPQIFTGTLAI 1195

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHTRF IP+  AQ+YAGDDCAIA+VC EKPSFALLKNRIA
Sbjct: 1196 MRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGDDCAIAEVCQEKPSFALLKNRIA 1255

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            LQAKPAY PQ RG WAEFCGYLITPKGLIKDPLKLH+SLELAKA +K G KDAI+NV+AN
Sbjct: 1256 LQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELAKALRKQGRKDAITNVVAN 1315

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            YSLDAK+AYSLGDDLQDLLS
Sbjct: 1316 YSLDAKMAYSLGDDLQDLLS 1335


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  559 bits (1440), Expect = e-157
 Identities = 276/379 (72%), Positives = 309/379 (81%)
 Frame = -1

Query: 1138 DPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPK 959
            +P  QLF HQQAKDEALLWETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+
Sbjct: 983  NPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPE 1042

Query: 958  EQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKL 779
            E   FSEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKL
Sbjct: 1043 EPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKL 1102

Query: 778  GAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYW 599
            G  KIK GQTIASFQQHAVMLYGTMARYMRRFR+ L PN+I INCE TP+DLSR++ NYW
Sbjct: 1103 GGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYW 1162

Query: 598  DFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIM 419
            DF   SYANDFTAFDQSQDGAMLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IM
Sbjct: 1163 DFKPASYANDFTAFDQSQDGAMLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIM 1222

Query: 418  RLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIAL 239
            RLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL
Sbjct: 1223 RLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLAL 1282

Query: 238  QAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANY 59
            +AKP Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     NY
Sbjct: 1283 EAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNY 1340

Query: 58   SLDAKLAYSLGDDLQDLLS 2
              D  LAY+L D L ++LS
Sbjct: 1341 ERDVGLAYALKDSLYEILS 1359


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  555 bits (1431), Expect = e-156
 Identities = 275/379 (72%), Positives = 308/379 (81%)
 Frame = -1

Query: 1138 DPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPK 959
            +P  QLF HQQAKDEALLWETIKARLTIS+PEAN EEF  KKD+GDILW +Y KAM LP+
Sbjct: 983  NPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYKKKDIGDILWLHYKKAMTLPE 1042

Query: 958  EQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKL 779
            E   FSEDLW   A EVQNTYL K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKL
Sbjct: 1043 EPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKL 1102

Query: 778  GAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYW 599
            G  KIK GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I INCE TP+DLSR++ NYW
Sbjct: 1103 GGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHIKINCEATPKDLSRFIQNYW 1162

Query: 598  DFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIM 419
            DF   SYANDFTAFDQSQD AMLQFEILKAK+FN+P  +I+GYLDIKL+ KIFLG L IM
Sbjct: 1163 DFKPASYANDFTAFDQSQDAAMLQFEILKAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIM 1222

Query: 418  RLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIAL 239
            RLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA V PE+PSF L+   +AL
Sbjct: 1223 RLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLAL 1282

Query: 238  QAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANY 59
            +AKP Y PQ  G WAEFCGYLITPKGLIKDP KL ASL+L +A   +G K  +     NY
Sbjct: 1283 EAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNY 1340

Query: 58   SLDAKLAYSLGDDLQDLLS 2
              D  LAY+L D L ++LS
Sbjct: 1341 ERDVGLAYALKDSLYEILS 1359


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  510 bits (1314), Expect = e-142
 Identities = 262/385 (68%), Positives = 294/385 (76%), Gaps = 5/385 (1%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            D+   Q  SHQQAKDEALLWETIKARL IS  + N  EF  KKD+GDILW NY +AM LP
Sbjct: 1050 DNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLP 1109

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
            ++   F E+LW   A E+Q+TYL KS   +K GERRQSPDF E  ILIFLKSQWVKKMEK
Sbjct: 1110 EDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEK 1168

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD   P +IMINCE+TP DLS W LNY
Sbjct: 1169 LGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEHIMINCERTPTDLSYWALNY 1228

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            W+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+PEWV+EGYLDIKL  +IFLGTLSI
Sbjct: 1229 WNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSI 1288

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGE  TFDANTECNIAYTHTRF+IPEG AQ     D A+   C EKPSF L+++ ++
Sbjct: 1289 MRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ-----DSAMDATCLEKPSFKLIESELS 1343

Query: 241  LQ-----AKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 77
            L+      KP    Q  G+WAEFCGYLITPKGLIKDPLKL AS  LAK + K      + 
Sbjct: 1344 LKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPLKLAASFRLAKERGKR----ELD 1399

Query: 76   NVIANYSLDAKLAYSLGDDLQDLLS 2
            N + NY+ D KLAY LGDDL +LL+
Sbjct: 1400 NCLENYARDMKLAYDLGDDLLELLT 1424


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
            [Allium virus X]
          Length = 1701

 Score =  509 bits (1310), Expect = e-141
 Identities = 248/380 (65%), Positives = 299/380 (78%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            +D   QLFSHQQAKD+ALLW TI+ARL IS P+AN+ EF AKK++GD+L+ +YH+AMKLP
Sbjct: 1303 EDAVIQLFSHQQAKDQALLWATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLP 1362

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             +   F EDLW  CA+EVQ TYL K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEK
Sbjct: 1363 DKPIPFMEDLWVACAQEVQGTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEK 1422

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGA KIKPGQTIASFQQ AVMLYGTMARYMRR R+A  P  IMINCEK PQ LS W+ NY
Sbjct: 1423 LGAPKIKPGQTIASFQQSAVMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNY 1482

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            W F+  +YANDFT FDQSQDGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSI
Sbjct: 1483 WKFNSYAYANDFTQFDQSQDGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSI 1542

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTH RF++P+GTAQ+YAGDD A++ + PE+PSFA  K ++ 
Sbjct: 1543 MRLTGEGPTFDANTECNIAYTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLT 1602

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            L +KPA   Q+RG WAEFCGYLITP G++KDP KL A++ LA+ Q K      +     +
Sbjct: 1603 LTSKPALFAQKRGFWAEFCGYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRS 1656

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            ++LD KLAY   D L ++LS
Sbjct: 1657 HALDLKLAYVHRDALTEVLS 1676


>gb|AFM77886.1| replicase [Hosta virus X]
          Length = 1473

 Score =  501 bits (1290), Expect = e-139
 Identities = 246/380 (64%), Positives = 294/380 (77%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++E   K+D+GD+L+  YHKAM LP
Sbjct: 1055 DEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLP 1114

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
            K+   F  DLW  CA+EVQ TYL K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEK
Sbjct: 1115 KDPIPFENDLWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEK 1174

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGA  IKPGQTIASF Q  VMLYGTMARYMRR RD   P +I+INCEKTP  +S +V   
Sbjct: 1175 LGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQ 1234

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFS  +YANDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+I
Sbjct: 1235 WDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAI 1294

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ 
Sbjct: 1295 MRLTGEGPTFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLT 1354

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            L++KP   PQ +G WAEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + +
Sbjct: 1355 LKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNS 1410

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            Y  D KL+Y LGD LQ+LLS
Sbjct: 1411 YGEDLKLSYDLGDHLQELLS 1430


>ref|YP_002308464.1| replicase [Hosta virus X] gi|58415284|emb|CAF04078.1| replicase
            [Hosta virus X]
          Length = 1507

 Score =  501 bits (1290), Expect = e-139
 Identities = 246/380 (64%), Positives = 294/380 (77%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            D+P  Q+F+HQQAKDEAL WETI+ARL I+T EAN++E   K+D+GD+L+  YHKAM LP
Sbjct: 1089 DEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLP 1148

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
            K+   F  DLW  CA+EVQ TYL K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEK
Sbjct: 1149 KDPIPFENDLWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEK 1208

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGA  IKPGQTIASF Q  VMLYGTMARYMRR RD   P +I+INCEKTP  +S +V   
Sbjct: 1209 LGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQ 1268

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            WDFS  +YANDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+I
Sbjct: 1269 WDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAI 1328

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTH RF +PE  AQ+YAGDD A+++VCPEK SF    +R+ 
Sbjct: 1329 MRLTGEGPTFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLT 1388

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            L++KP   PQ +G WAEFCG LITP+G+IKDP+KLHAS  LA    K G    I   + +
Sbjct: 1389 LKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNS 1444

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            Y  D KL+Y LGD LQ+LLS
Sbjct: 1445 YGEDLKLSYDLGDHLQELLS 1464


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  493 bits (1269), Expect = e-137
 Identities = 238/378 (62%), Positives = 293/378 (77%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            DDP  QLFSHQQAKD+ LLW TI+ARL IS P+AN+EEFR KK++GD+LW NY +AMKLP
Sbjct: 1271 DDPVVQLFSHQQAKDQTLLWATIEARLKISNPKANMEEFRMKKNVGDVLWLNYKRAMKLP 1330

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
             +  EFS +LW  CAEEVQ TYL K ++ IK GE RQSPDF +H I +FLKSQWVKK+EK
Sbjct: 1331 DKPIEFSHELWHACAEEVQKTYLSKPLNMIKNGENRQSPDFDKHTISLFLKSQWVKKLEK 1390

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGA KIKPGQTIASFQQ  VMLYGTMARYMRR R A  P NI +NCE+TPQ L+ ++ + 
Sbjct: 1391 LGAPKIKPGQTIASFQQATVMLYGTMARYMRRIRQAFQPPNIQLNCEQTPQQLTTFIKDQ 1450

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            W F +P+YANDFT FDQSQDGAMLQFE+LKAK+ N+PE +I+GY+DIK + K+F G L+I
Sbjct: 1451 WSFDQPAYANDFTQFDQSQDGAMLQFEVLKAKHHNIPEAIIQGYIDIKTNAKVFTGVLAI 1510

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIA+ HTRF I + TAQ+YAGDD A +++  EK SF  +  ++A
Sbjct: 1511 MRLTGEGPTFDANTECNIAFNHTRFHISDDTAQLYAGDDTAFSKIPIEKVSFQGVAKQLA 1570

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            L +KP +  Q++G+WAEFCGY ITP GLIK+P KL A+L LA  Q K  +KD ++    +
Sbjct: 1571 LTSKPLFYKQKKGEWAEFCGYSITPLGLIKEPKKLQANLTLAIKQNK--IKDTVN----S 1624

Query: 61   YSLDAKLAYSLGDDLQDL 8
            YS D  LAY   D+L ++
Sbjct: 1625 YSQDVALAYQHKDELYEI 1642


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
            replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  488 bits (1255), Expect = e-135
 Identities = 233/380 (61%), Positives = 287/380 (75%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            D+PT QL SHQQAKD+ LLW TI+ARL ISTPE NL E+  K+++GD+LW +Y  AM LP
Sbjct: 1102 DNPTIQLSSHQQAKDQTLLWATIEARLKISTPERNLAEYLMKREVGDVLWLHYKNAMNLP 1161

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
            +E   F + LW  CAEEVQ TYL K +  +K GE RQSPDFH++ I +FLKSQWVKKMEK
Sbjct: 1162 EEPIPFEQTLWDTCAEEVQKTYLSKPMHMLKNGELRQSPDFHKNTIALFLKSQWVKKMEK 1221

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LGA KIKPGQTIASFQQ AVMLYGTMARYMRR R+   P ++ INCE++P+ +S W+ N 
Sbjct: 1222 LGADKIKPGQTIASFQQAAVMLYGTMARYMRRMREVFQPTHVFINCEQSPEGMSDWIKNE 1281

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            W+F   +YANDFT FDQSQDGAMLQFEILKAK+ ++PEWV+EGYLDIK +  +F GTL I
Sbjct: 1282 WNFKGNAYANDFTQFDQSQDGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAHVFTGTLGI 1341

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTH RF +P+GTAQ YAGDD  +A +  E+ SF + KN++ 
Sbjct: 1342 MRLTGEGPTFDANTECNIAYTHLRFNVPKGTAQAYAGDDSVLACIPEERESFKMWKNKLE 1401

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            L AKP Y PQ +G+WA+FCG+L TP G +K+PLK+ A +ELAK       +  +   + +
Sbjct: 1402 LTAKPEYFPQMQGEWAQFCGFLFTPLGALKEPLKMLAVVELAKQ------RGELKKNMRS 1455

Query: 61   YSLDAKLAYSLGDDLQDLLS 2
            Y+LD  L Y  GD LQ + S
Sbjct: 1456 YALDVLLNYQHGDALQHVFS 1475


>gb|AAF67818.1|AF111193_1 replicase [Potato virus X]
          Length = 1456

 Score =  477 bits (1227), Expect = e-132
 Identities = 231/378 (61%), Positives = 284/378 (75%)
 Frame = -1

Query: 1141 DDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLP 962
            +D T QLFSHQQAKDE LLW TI ARL  S  E N  EF +KKD+GD+L+ NY KAM LP
Sbjct: 1052 EDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLP 1111

Query: 961  KEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEK 782
            KE+  FS+++W  CA EVQ+ YL KS   +  G  RQSPDF E++I++FLKSQWV K+EK
Sbjct: 1112 KERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWVTKVEK 1171

Query: 781  LGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNY 602
            LG  KIKPGQTIA+F Q  VML+GTMARYMR FR A  P  + INCE TP+D+S W LN 
Sbjct: 1172 LGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALNN 1231

Query: 601  WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSI 422
            W+F +PS AND+TAFDQSQDGAMLQFE+LKAK+  +PE +I+ Y+DIK + +IFLGTLSI
Sbjct: 1232 WNFGRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQIFLGTLSI 1291

Query: 421  MRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIA 242
            MRLTGEGPTFDANTECNIAYTHT+F+IP GTAQ+YAGDD A+  V   KPSF  L++++ 
Sbjct: 1292 MRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAGDDSALDCVPEVKPSFHRLEDKLL 1351

Query: 241  LQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIAN 62
            L++KP  T Q++G W EFCG+LITPKG++KDP+KLH SL+LA+A      K  +     +
Sbjct: 1352 LKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLHVSLKLAEA------KGELKKCQDS 1405

Query: 61   YSLDAKLAYSLGDDLQDL 8
            Y +D   AY   D L DL
Sbjct: 1406 YEIDLSYAYDHKDSLHDL 1423