BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia22_contig00001108
         (3856 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...  1888   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1800   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1799   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1768   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1756   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1738   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1718   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1675   0.0  
gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1658   0.0  
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...  1642   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1630   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1625   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1622   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1621   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1605   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1600   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1589   0.0  
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...  1589   0.0  
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a...  1578   0.0  
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...  1569   0.0  

>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score = 1888 bits (4890), Expect = 0.0
 Identities = 918/1204 (76%), Positives = 1053/1204 (87%), Gaps = 4/1204 (0%)
 Frame = -2

Query: 3729 EEAGPS-SKEKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATSFF 3553
            ++ GPS SK+K  NG+T M+I            D++ +AMQ LDEG +K FCRKAATSFF
Sbjct: 2    DDVGPSTSKDKLFNGNTFMDIDEDIDFDLSDSDDDIDNAMQDLDEGVVKSFCRKAATSFF 61

Query: 3552 EKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGD-GDWRYASLKFGKVTL 3376
            E++GLISHQ+NSYN+F+ HGI Q+F S+GEI VEP +DPSK+GD G+W+ ASLKFGKV L
Sbjct: 62   EQHGLISHQLNSYNNFINHGIHQLFASIGEIIVEPGYDPSKRGDDGEWQKASLKFGKVNL 121

Query: 3375 EHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQV-YTKGLSRSDKFK 3199
            E P+F+ GEKFSS +G +++L+L P++ARLQNMTY++RIKVETHL+V YT+GL RS+KF 
Sbjct: 122  ERPSFWTGEKFSSAEGAKDNLELHPKHARLQNMTYAARIKVETHLEVVYTEGLVRSEKFT 181

Query: 3198 TGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTF 3019
            TGV   V +T L     ++ FG+LPVMV SDLCW+ S+ K+DCEFDQGGYF+IKGAEKTF
Sbjct: 182  TGVSTHVQRTTLKSLSLEINFGKLPVMVNSDLCWLKSTGKKDCEFDQGGYFIIKGAEKTF 241

Query: 3018 IAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVPKVENIMGADKILTVYFYVTEIP 2839
            IAQEQ+CL RLWV+K PTWT++YRP++KR+R+Y+KLVPKVE+    +KILTVYF   E+P
Sbjct: 242  IAQEQICLKRLWVSKDPTWTISYRPITKRRRIYLKLVPKVESAPVGEKILTVYFSFVEMP 301

Query: 2838 IWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDL 2659
            IW+LFFALG  ND+EVV +ID+DIEDSAIANIL+ASI+DAD KYEGFRK G+A+KH++DL
Sbjct: 302  IWILFFALGARNDKEVVKMIDMDIEDSAIANILLASIHDADSKYEGFRKNGSAIKHLKDL 361

Query: 2658 MKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRNK 2479
            M+  K PP ESVEE  + +LFP+L S  QKAC LAYMVKCLLE Y+GRRKVDNRDDLRNK
Sbjct: 362  MQEGKYPPTESVEEYFQIHLFPHLKSSVQKACFLAYMVKCLLECYKGRRKVDNRDDLRNK 421

Query: 2478 XXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFST 2299
                        L+I IKHAER M++S+QRDLD+ R+LQ I+HYLDASIITNGLSRAFST
Sbjct: 422  RLELAGELLERELRIQIKHAERRMMRSMQRDLDKGRDLQTIDHYLDASIITNGLSRAFST 481

Query: 2298 GAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKIC 2119
            GAWSHPYK+MER+SG+VAT+RRTNPLQA ADMRKTRQQVSYTGRVGDARYPHPSHWGKIC
Sbjct: 482  GAWSHPYKRMERISGIVATLRRTNPLQAIADMRKTRQQVSYTGRVGDARYPHPSHWGKIC 541

Query: 2118 FLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFL 1939
            FLSTPDGENCGLVKNLAS+GLVST +L QE LL++FRECGME+L DD SSLLDGK+KIFL
Sbjct: 542  FLSTPDGENCGLVKNLASLGLVSTEVLDQEGLLKKFRECGMEQLADDTSSLLDGKHKIFL 601

Query: 1938 DGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQN 1759
            DGD VG+C+DSSSFVS LRR+R++ EVP+QVEIK D+ +GEVR+F DAGRILRPLLVV+N
Sbjct: 602  DGDLVGVCRDSSSFVSMLRRRRQKNEVPHQVEIKMDQSNGEVRVFADAGRILRPLLVVRN 661

Query: 1758 LKKIKDLKGDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELD 1579
            L+KI DLK    FQSLLD G++E IGPEEEEDCQTAWG K+LF AEL+NPPV+Y+HCELD
Sbjct: 662  LRKINDLKSHVFFQSLLDVGIVELIGPEEEEDCQTAWGTKYLFMAELENPPVKYSHCELD 721

Query: 1578 SSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPL 1399
            SSFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+STT+P+IR+DTNSHQLYYPQ+PL
Sbjct: 722  SSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTTSPNIRVDTNSHQLYYPQKPL 781

Query: 1398 FRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGM 1219
            FRT+L+DCLGK   S  +K ++P P FFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGM
Sbjct: 782  FRTVLSDCLGKLTDSCRRKGIIPLPPFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGM 841

Query: 1218 FRTEHVRSYKAEVENPE-APGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTG 1042
            FR+EHVRSYK++V+N E AP KK K DDL+SFGK QSKIGRVDSL++DGFPYVGANLQTG
Sbjct: 842  FRSEHVRSYKSDVDNSEAAPVKKFKADDLISFGKVQSKIGRVDSLDEDGFPYVGANLQTG 901

Query: 1041 DIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSM 862
            DIVIGK  A+GVDHSIKLKHTERGMVQKV+LS++DEG+N+AVVSLRQVRSPCLGDKFSSM
Sbjct: 902  DIVIGKCTATGVDHSIKLKHTERGMVQKVILSADDEGRNYAVVSLRQVRSPCLGDKFSSM 961

Query: 861  HGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKY 682
            HGQKGVLGFLESQENFPFT+QGIVPDIVINPHAFPSRQTPGQ               LKY
Sbjct: 962  HGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGLKY 1021

Query: 681  ATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKV 502
            ATPFS+PSVEDITAQLHRLGFSRWG E+VYDGRTGE + SLIFMGPTFYQRLTHM+EDKV
Sbjct: 1022 ATPFSSPSVEDITAQLHRLGFSRWGAEKVYDGRTGEALKSLIFMGPTFYQRLTHMAEDKV 1081

Query: 501  KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHIC 322
            KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHIC
Sbjct: 1082 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHIC 1141

Query: 321  RKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISLKFD 142
            RKC N+ANVIQR V GGRK+RGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISLKFD
Sbjct: 1142 RKCKNMANVIQRPVFGGRKVRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISLKFD 1201

Query: 141  TELC 130
            TE+C
Sbjct: 1202 TEIC 1205


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1800 bits (4663), Expect = 0.0
 Identities = 894/1218 (73%), Positives = 1019/1218 (83%), Gaps = 15/1218 (1%)
 Frame = -2

Query: 3738 DFLEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELGS-----------AMQGLDEG 3595
            D +EE G SS KEK +NGS +M+              +               ++ L E 
Sbjct: 5    DIMEEVGCSSGKEKISNGSARMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGET 64

Query: 3594 YLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGD 3415
            YLK FC+KA+T FFEKYGLISHQINSYNDF+ +GIQ+VFDSVGEI VEP +DPSK+GDGD
Sbjct: 65   YLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGD 124

Query: 3414 WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQV 3235
            W++AS+KFGKVTLE P F+AGEKFS+ DG +E+L L PR+ARLQNMTYS+RI VETH+QV
Sbjct: 125  WKHASVKFGKVTLERPKFWAGEKFSA-DGGKEYLDLLPRHARLQNMTYSARIMVETHVQV 183

Query: 3234 YTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQG 3055
            YTK L RSDKFKTGV+ FVDK    +   DV+ GR+PVMV S+LCWMN  +K DCEFD G
Sbjct: 184  YTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHG 243

Query: 3054 GYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGA 2881
            GYF++KGAEKTFIAQEQ+CL RLWV+  PTW V YRP  KRKRVYIKL    K+E+I G 
Sbjct: 244  GYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGG 303

Query: 2880 DKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEG 2701
            +K L+VY  + E+PIWVLFFALGVS+DREVVNLID+DIED+ I NIL+ASI++ADK  E 
Sbjct: 304  EKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCED 362

Query: 2700 FRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYR 2521
            FRK   A+ +++ L+K+ K PP+ESVEECI  YLFPNLS  +QKA  L YMVKCLL ++ 
Sbjct: 363  FRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFI 422

Query: 2520 GRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLD 2341
            GRRKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QPIEHYLD
Sbjct: 423  GRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLD 482

Query: 2340 ASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVG 2161
            ASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TADMRK+RQQV+YTG+VG
Sbjct: 483  ASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVG 542

Query: 2160 DARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDD 1981
            DARYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVST IL+    L+    CGM+KL D
Sbjct: 543  DARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKLVD 600

Query: 1980 DMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFI 1801
            D ++ L GK K+ LDG+WVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+  GEVRIF 
Sbjct: 601  DCATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFS 660

Query: 1800 DAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTA 1624
            D+GRILRPLLVV NLKKIK LKG D+ FQSLLD+G+IEFIGPEEEEDC+TAWG++++  A
Sbjct: 661  DSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEYILKA 720

Query: 1623 ELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIR 1444
            + +NPP +YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST NP+ R
Sbjct: 721  DKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNR 780

Query: 1443 IDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQ 1264
            +DTN+HQLYYPQRPLFRT+LAD LGK K + +QK MLPRPE+FNGQCAIVAVNVHLGYNQ
Sbjct: 781  VDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQ 840

Query: 1263 EDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLE 1084
            EDSLVMNRASLERGMFR+EHVRSYKAEV+N EA  KK KI+D V+FGKTQSKIGRVDSL+
Sbjct: 841  EDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLD 900

Query: 1083 DDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLR 904
            DDGFP++GANLQ+GDI+IGK A SG DHS+KLKHTERGMVQKV+LS+NDEGKNFAVVSLR
Sbjct: 901  DDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLR 960

Query: 903  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXX 724
            QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ    
Sbjct: 961  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 1020

Query: 723  XXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGP 544
                        KYATPFST SV+ I  QL   GF+RWG+ERVY+GRTGE VHSLIFMGP
Sbjct: 1021 ALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGP 1080

Query: 543  TFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 364
            TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE
Sbjct: 1081 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1140

Query: 363  RLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLL 184
            RLFTLSDSSQMHIC KC N+ANVIQR V GG K+RGP+CRFCESVED+V+VNVPYGAKLL
Sbjct: 1141 RLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLL 1199

Query: 183  CQELFSMGISLKFDTELC 130
            CQELFSMGISLKFDTE+C
Sbjct: 1200 CQELFSMGISLKFDTEIC 1217


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1799 bits (4659), Expect = 0.0
 Identities = 894/1218 (73%), Positives = 1018/1218 (83%), Gaps = 15/1218 (1%)
 Frame = -2

Query: 3738 DFLEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELGS-----------AMQGLDEG 3595
            D +EE G SS KEK +NGST+M+              +               ++ L E 
Sbjct: 5    DIMEEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGES 64

Query: 3594 YLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGD 3415
            +LK FC+KA+T FFEKYGLISHQINSYNDF+ +GIQ+VFDSVGEI VEP +DPSK+GDGD
Sbjct: 65   FLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGD 124

Query: 3414 WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQV 3235
            W++AS+KFGKVTLE P F+AGEKFS VDG +E+L L PR+ARLQNMTYS+RI VETH+QV
Sbjct: 125  WKHASVKFGKVTLERPKFWAGEKFS-VDGGKEYLDLLPRHARLQNMTYSARIMVETHVQV 183

Query: 3234 YTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQG 3055
            YTK L RSDKFKTGV+ FVDK    +   DV+ GR+PVMV S+LCWMN  +K DCEFD G
Sbjct: 184  YTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHG 243

Query: 3054 GYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGA 2881
            GYF++KGAEKTFIAQEQ+CL RLWV+  PTW V YRP  KRKRVYIKL    K+E+I G 
Sbjct: 244  GYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGG 303

Query: 2880 DKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEG 2701
            +K L+VY  + E+PIWVLFFALGVS+DREVVNLID+DIED+ I NIL+ASI++ADK  E 
Sbjct: 304  EKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCED 362

Query: 2700 FRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYR 2521
            FRK   A+ +++ L+K+ K PP+ESVEECI  YLFPNLS  +QKA  L YMVKCLL ++ 
Sbjct: 363  FRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFI 422

Query: 2520 GRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLD 2341
            GRRKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QPIEHYLD
Sbjct: 423  GRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLD 482

Query: 2340 ASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVG 2161
            ASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TADMRK+RQQV+YTG+VG
Sbjct: 483  ASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVG 542

Query: 2160 DARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDD 1981
            DARYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVST IL+    L+    CGM+KL D
Sbjct: 543  DARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKLVD 600

Query: 1980 DMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFI 1801
            D S+ L GK K+ LDG+WVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+  GEVRIF 
Sbjct: 601  DCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFS 660

Query: 1800 DAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTA 1624
            D GRILRPLLVV NLKKIK LKG D+ FQSLLD+G+IE IGPEEEEDC+TAWG++++  A
Sbjct: 661  DPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKA 720

Query: 1623 ELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIR 1444
            + +NPP +YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST NP+ R
Sbjct: 721  DKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNR 780

Query: 1443 IDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQ 1264
            +DTN+HQLYYPQRPLFRT+LAD LGK K + +QK MLPRPE+FNGQCAIVAVNVHLGYNQ
Sbjct: 781  VDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQ 840

Query: 1263 EDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLE 1084
            EDSLVMNRASLERGMFR+EHVRSYKAEV+N EA  KK KI+D V+FGKTQSKIGRVDSL+
Sbjct: 841  EDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLD 900

Query: 1083 DDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLR 904
            DDGFP++GANLQ+GDI+IGK + SG DHS+KLKHTERGMVQKV+LS+NDEGKNFAVVSLR
Sbjct: 901  DDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLR 960

Query: 903  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXX 724
            QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ    
Sbjct: 961  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 1020

Query: 723  XXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGP 544
                        KYATPFST SV+ I  QL   GF+RWG+ERVY+GRTGE VHSLIFMGP
Sbjct: 1021 ALGKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGP 1080

Query: 543  TFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 364
            TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE
Sbjct: 1081 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1140

Query: 363  RLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLL 184
            RLFTLSDSSQMHIC KC N+ANVIQR V GG K+RGP+CRFCESVED+V+VNVPYGAKLL
Sbjct: 1141 RLFTLSDSSQMHICGKCKNMANVIQRTVQGG-KVRGPFCRFCESVEDIVKVNVPYGAKLL 1199

Query: 183  CQELFSMGISLKFDTELC 130
            CQELFSMGISLKFDTE+C
Sbjct: 1200 CQELFSMGISLKFDTEIC 1217


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1768 bits (4578), Expect = 0.0
 Identities = 873/1220 (71%), Positives = 1014/1220 (83%), Gaps = 17/1220 (1%)
 Frame = -2

Query: 3738 DFLEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELG---------SAMQGLDEGYL 3589
            D +E+ G SS K K +NGST M+              +           ++++ L  G+L
Sbjct: 5    DIMEDVGCSSGKAKTSNGSTMMDFDIDGLFEVEDYDWDEDEDEDDNLDMTSIKELGGGFL 64

Query: 3588 KMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWR 3409
            + FC+KA+  FFEKYG+ISHQI+SYNDF+++GIQ+VFDSVGEI VEP +DPSKKG+G+W+
Sbjct: 65   RNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKKGEGEWK 124

Query: 3408 YASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYT 3229
            +AS+KFGKVTL+ P F+AGEKFS+ +G +E+L L PR+ARLQNMTYS+RI VETH+QV+T
Sbjct: 125  HASVKFGKVTLDRPKFWAGEKFSAYNG-EEYLDLWPRHARLQNMTYSARIIVETHVQVFT 183

Query: 3228 KGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGY 3049
            K L RSDKFKTGVE FVDK  + +   DV  GR+PVMV S+LCWM+ +++ DC+FD GGY
Sbjct: 184  KKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFDHGGY 243

Query: 3048 FVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGADK 2875
            F++KGAEK FIAQEQ+CL RLWV+   TW VAYR   KR RVY+KL    K E+I G  K
Sbjct: 244  FIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAK 303

Query: 2874 ILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFR 2695
             L+VYF + E+PIWVLFFALGVS+DRE+V+LID+DI+D+ I NIL+ASI+DADK  E FR
Sbjct: 304  ALSVYF-LAEMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCEDFR 362

Query: 2694 KEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGR 2515
            K   A+ +++ L+KS K PP+ESVEECIK YLFPNLS  +QKA  L YMVKCLL +Y GR
Sbjct: 363  KGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGR 422

Query: 2514 RKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDAS 2335
            RKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QP+EHYLDAS
Sbjct: 423  RKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQVQPLEHYLDAS 482

Query: 2334 IITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDA 2155
            IITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TAD+RKTRQQV+YTG+VGDA
Sbjct: 483  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDA 542

Query: 2154 RYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDM 1975
            RYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVSTT+L+   LL+    CGM+KL DD 
Sbjct: 543  RYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKP--LLETLFRCGMQKLVDDS 600

Query: 1974 SSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDA 1795
            ++ L GK K+ LDGDWVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+   EVRIF DA
Sbjct: 601  ATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDA 660

Query: 1794 GRILRPLLVVQNLKKIKDLK-----GDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLF 1630
            GRI+RPLLVV NLK IK LK     GD+ FQ+LLD G+IE IGPEEEEDC+TAWG+++L 
Sbjct: 661  GRIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLL 720

Query: 1629 TAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPS 1450
             A+ +NPPV YTHCELD SFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG+ST NP+
Sbjct: 721  KADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 780

Query: 1449 IRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGY 1270
             R+DTN+HQLYYPQRPLF T+L+D LGK K   HQK ML RPE++NGQCAIVAVNVHLGY
Sbjct: 781  ARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQCAIVAVNVHLGY 840

Query: 1269 NQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDS 1090
            NQEDS+VMNRASLERGMFR+EHVRSYKAEV+N EA GKK K++D V+FGKTQSKIGRVDS
Sbjct: 841  NQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDS 900

Query: 1089 LEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVS 910
            L+DDGFP++GANLQ+GDI+IGK+A SG DHS+K+KHTERGMVQKV+LS+ND+GKNFAVVS
Sbjct: 901  LDDDGFPFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSANDDGKNFAVVS 960

Query: 909  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXX 730
            LRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ  
Sbjct: 961  LRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLL 1020

Query: 729  XXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFM 550
                          KYATPFS  SV+ I  QLH  GFSRWG ERVY+GRTGE VHSLIFM
Sbjct: 1021 EAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGSERVYNGRTGEMVHSLIFM 1080

Query: 549  GPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 370
            GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1081 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1140

Query: 369  HERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAK 190
            HERLFTLSDSSQMHIC KC N+ANVIQR+  GG KIRGP+CRFCESVED+V+V+VPYGAK
Sbjct: 1141 HERLFTLSDSSQMHICGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVKVDVPYGAK 1199

Query: 189  LLCQELFSMGISLKFDTELC 130
            LLCQELFSMGISLKFDTE+C
Sbjct: 1200 LLCQELFSMGISLKFDTEIC 1219


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1756 bits (4547), Expect = 0.0
 Identities = 874/1220 (71%), Positives = 1008/1220 (82%), Gaps = 17/1220 (1%)
 Frame = -2

Query: 3738 DFLEEAGPSS-KEKFANGSTQM--------EIXXXXXXXXXXXXDELGSA-MQGLDEGYL 3589
            D +E+ G SS K K +NGST M        E+            D L  A ++ L  G+L
Sbjct: 5    DIMEDVGCSSGKGKTSNGSTMMDFDIDGLFEVGDYDWDDDEDEDDNLDMASIKELGGGFL 64

Query: 3588 KMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWR 3409
            + FC+KA+  FFEKYGLISHQI+SYNDF+++GIQ+VFDSVGEI VEP +DPSKKG+G+W+
Sbjct: 65   RNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGYDPSKKGEGEWK 124

Query: 3408 YASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYT 3229
            +AS+KFG V L+ P F+AGEK+S+ +G +E+L + PR+ARLQNMTYS+RI VETH+QV+T
Sbjct: 125  HASVKFGNVILDRPKFWAGEKYSAYNG-EEYLNMWPRHARLQNMTYSARIIVETHVQVFT 183

Query: 3228 KGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGY 3049
            K L RSDKFKTGVE FVDK  + +   DV  GR+PVMV S+LCWM+ +++ DCEFD GGY
Sbjct: 184  KKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDHGGY 243

Query: 3048 FVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGADK 2875
            F++KGAEK FIAQEQMCL RLWV+   TW VAYR   KR RVY+KL    K E I G  K
Sbjct: 244  FIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQIKGEAK 303

Query: 2874 ILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFR 2695
             L+VYF + E+PIWVLFFALGVS+DREVV+LID+DI+D+ I NIL+ASI+DADK  E FR
Sbjct: 304  SLSVYF-LAEMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCEDFR 362

Query: 2694 KEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGR 2515
            K   A+ +++ L+KS K PP+ESVEECIK YLFPNLS  +QKA  L YMVKCLL +Y GR
Sbjct: 363  KGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIGR 422

Query: 2514 RKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDAS 2335
            RKVDNRDD RNK            L++HIKHAER MVK++QRDL  DR++ PIEHYLDAS
Sbjct: 423  RKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQVHPIEHYLDAS 482

Query: 2334 IITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDA 2155
            IITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TAD+RKTRQQV+YTG+VGDA
Sbjct: 483  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYTGKVGDA 542

Query: 2154 RYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDM 1975
            RYP+PSHWGK+CFLSTPDGENCGLVKNLASMGLVSTT+L    LL+    CGM+KL DD 
Sbjct: 543  RYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMP--LLETLFRCGMQKLVDDC 600

Query: 1974 SSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDA 1795
            ++ L GK K+ LDGDWVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+   EVRIF DA
Sbjct: 601  ATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEQQDEVRIFSDA 660

Query: 1794 GRILRPLLVVQNLKKIKDLKG-----DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLF 1630
            GRI+RPLLVV NLK IK L G     D+ FQ+LLD G+IE IGPEEEEDC+TAWG+++L 
Sbjct: 661  GRIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLL 720

Query: 1629 TAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPS 1450
             A+ +NPPV YTHCELD SFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG+ST NP+
Sbjct: 721  KADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGFSTVNPN 780

Query: 1449 IRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGY 1270
            IR+DTN+HQLYYPQRPLF T+L+D LGK K + HQ+ ML RPE++NGQCAIVAVNVHLGY
Sbjct: 781  IRVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQCAIVAVNVHLGY 840

Query: 1269 NQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDS 1090
            NQEDS+VMNRASLERGMFR+EHVRSYKAEV+N EA GKK K +D V+FGKTQSKIGRVD 
Sbjct: 841  NQEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEATGKKSKAEDSVNFGKTQSKIGRVDC 900

Query: 1089 LEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVS 910
            L+DDG PY+GANLQ+GDI+IGK A SG DHS+K+KHTE+GMVQKV+LS+NDEGKNFAVVS
Sbjct: 901  LDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSANDEGKNFAVVS 960

Query: 909  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXX 730
            LRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ  
Sbjct: 961  LRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLL 1020

Query: 729  XXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFM 550
                          KYATPFS  SV+ I  QLH  GFSRWG+ERVY+GRTGE VHSLIFM
Sbjct: 1021 EAALGKGIALGGGEKYATPFSALSVDAILKQLHGRGFSRWGNERVYNGRTGEMVHSLIFM 1080

Query: 549  GPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 370
            GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL
Sbjct: 1081 GPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1140

Query: 369  HERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAK 190
            HERLFTLSDSSQMHIC KC N+ANVIQR V GG K+RGP+CRFCESVED+V+V VPYGAK
Sbjct: 1141 HERLFTLSDSSQMHICGKCKNMANVIQRPVPGG-KVRGPFCRFCESVEDIVKVGVPYGAK 1199

Query: 189  LLCQELFSMGISLKFDTELC 130
            LLCQELFSMGISLKFDTE+C
Sbjct: 1200 LLCQELFSMGISLKFDTEIC 1219


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1738 bits (4500), Expect = 0.0
 Identities = 860/1217 (70%), Positives = 1008/1217 (82%), Gaps = 10/1217 (0%)
 Frame = -2

Query: 3750 MGAWDFLEEAGPSSK--EKFANGSTQMEIXXXXXXXXXXXXDELGSA-MQGLDEGYLKMF 3580
            MGA D   + G SS   EK +NG  QMEI              +GS  +  L++ YLK F
Sbjct: 1    MGASDAKGDLGMSSSMGEKLSNG-VQMEIDDDL----------MGSIEIDDLNKEYLKTF 49

Query: 3579 CRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYAS 3400
            C+K A SFF +YGLI HQINS+NDF+K+GIQ+VFDS GEI VEP +DPSK+G+GDWRYAS
Sbjct: 50   CKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYAS 109

Query: 3399 LKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGL 3220
            ++FGKVTLE P  +AGE     DG +E L   PR+ARLQNMTYSSR+K + H QVYT+ L
Sbjct: 110  VRFGKVTLERPRVWAGES----DG-KESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKL 164

Query: 3219 SRSDKFKTGVEN-FVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFV 3043
             RSDK+KTG +N +V+K V+ + + D++ GR+PVMVKS+LCWMN  E+ DCE+D GGYF+
Sbjct: 165  VRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFL 224

Query: 3042 IKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-KVENIMGADKILT 2866
            IKGAEKTFIAQEQ+CL RLWV+  PTW VAYRP+ KRKRVY+KL P K EN  G +K+LT
Sbjct: 225  IKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLT 284

Query: 2865 VYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEG----F 2698
            VYF  TEIPIW+LFFALG S+D+EVV+LID +I+D+ I+NIL+ASI++AD++ E     F
Sbjct: 285  VYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYF 344

Query: 2697 RKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRG 2518
            R++GNA+  ++ L+KS K PP ES++ECI  YLFPN S  +QKA  L YMVKCLL+AY G
Sbjct: 345  RRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTG 404

Query: 2517 RRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDA 2338
            RRK DNRDD RNK            L++HI+HAER MVK++QR+L  DR+L+PIE+YLDA
Sbjct: 405  RRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDA 464

Query: 2337 SIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGD 2158
            SIITNGLSRAFSTG WSHP+K+MER+SGVVAT+RRTNPLQ TADMRKTRQQV YTG+VGD
Sbjct: 465  SIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGD 524

Query: 2157 ARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDD 1978
            ARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST +L  + L+ +  +CGMEKL DD
Sbjct: 525  ARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVL--DPLVDKLFDCGMEKLVDD 582

Query: 1977 MSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFID 1798
             S+ L GK K+FLDGDWVG+C+D  SFV +LR KRR  E+P QVEIK+D+  GEVRIF D
Sbjct: 583  TSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSD 642

Query: 1797 AGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAE 1621
            AGRILRPLLVV+NLKK+K  KGD F+FQSLLD G++E IG EEEEDC TAWGIK+L    
Sbjct: 643  AGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH 702

Query: 1620 LDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRI 1441
             D+PPV+YTHCELD SFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIG+STTNP+IR+
Sbjct: 703  -DDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRV 761

Query: 1440 DTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQE 1261
            DT SHQLYYPQRPLFRT+++DCLGK   S+  K ++PRPE+FNGQ AIVAVNVHLGYNQE
Sbjct: 762  DTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQE 821

Query: 1260 DSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLED 1081
            DSLVMNRASLERGMFR+EH+RSYK+EV+N E+  KK+K +D V FGK QSKIGRVDSL+D
Sbjct: 822  DSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDD 881

Query: 1080 DGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ 901
            DGFP++GANLQ GDIVIG+ A SGVDHSIKLKHTERGMVQKVV+S+ND+GKNFAVVSLRQ
Sbjct: 882  DGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQ 941

Query: 900  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXX 721
            VR+PCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ     
Sbjct: 942  VRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1001

Query: 720  XXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPT 541
                      L++ATPFST SV+ I  QLHR GFSRWG ERVY+GRTGE + SLIFMGPT
Sbjct: 1002 LGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPT 1061

Query: 540  FYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 361
            FYQRL HM+EDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHER
Sbjct: 1062 FYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHER 1121

Query: 360  LFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLC 181
            LFTLSDS+ MHICR+C N++NVIQR+V GGRK+RGPYCR+CES E++V+VNVPYGAKLLC
Sbjct: 1122 LFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLC 1181

Query: 180  QELFSMGISLKFDTELC 130
            QELFSMGISLKF+T+LC
Sbjct: 1182 QELFSMGISLKFETQLC 1198


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1718 bits (4450), Expect = 0.0
 Identities = 855/1217 (70%), Positives = 1000/1217 (82%), Gaps = 10/1217 (0%)
 Frame = -2

Query: 3750 MGAWDFLEEAGPSSK--EKFANGSTQMEIXXXXXXXXXXXXDELGSA-MQGLDEGYLKMF 3580
            MGA D   + G SS   EK +NG  QMEI              +GS  +  L++ YLK F
Sbjct: 37   MGASDAKGDLGMSSSMGEKLSNG-VQMEIDDDL----------MGSIEIDDLNKEYLKTF 85

Query: 3579 CRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYAS 3400
            C+K A SFF +YGLI HQINS+NDF+K+GIQ+VFDS GEI VEP +DPSK+G+GDWRYAS
Sbjct: 86   CKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYAS 145

Query: 3399 LKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGL 3220
            ++FGKVTLE P  +AGE     DG +E L   PR+ARLQNMTYSSR+K + H QVYT+ L
Sbjct: 146  VRFGKVTLERPRVWAGES----DG-KESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKL 200

Query: 3219 SRSDKFKTGVEN-FVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFV 3043
             RSDK+KTG +N +V+K V+ + + D++ GR+PVMVKS+LCWMN  E+ DCE+D GGYF+
Sbjct: 201  VRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFL 260

Query: 3042 IKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-KVENIMGADKILT 2866
            IKGAEKTFIAQEQ+CL RLWV+  PTW VAYRP+ KRKRVY+KL P K EN  G +K+LT
Sbjct: 261  IKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLT 320

Query: 2865 VYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEG----F 2698
            VYF  TEIPIW+LFFALG S+D+EVV+LID +I+D+ I+NIL+ASI++AD++ E     F
Sbjct: 321  VYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYF 380

Query: 2697 RKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRG 2518
            R++GNA+  ++ L+KS K PP ES++ECI  YLFPN S  +QKA  L YMVKCLL+AY G
Sbjct: 381  RRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTG 440

Query: 2517 RRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDA 2338
            RRK DNRDD RNK            L++HI+HAER MVK++QR+L  DR+L+PIE+YLDA
Sbjct: 441  RRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDA 500

Query: 2337 SIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGD 2158
            SIITNGLSRAFSTG WSHP+K+MER+SGVVAT+RRTNPLQ TADMRKTRQQV YTG+VGD
Sbjct: 501  SIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGD 560

Query: 2157 ARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDD 1978
            ARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST +L  + L+ +  +CGMEKL DD
Sbjct: 561  ARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVL--DPLVDKLFDCGMEKLVDD 618

Query: 1977 MSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFID 1798
             S+ L GK K+FLDGDWVG+C+D  SFV +LR KRR  E+P QVEIK+D+  GEVRIF D
Sbjct: 619  TSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSD 678

Query: 1797 AGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAE 1621
            AGRILRPLLVV+NLKK+K  KGD F+FQSLLD G++E IG EEEEDC TAWGIK+L    
Sbjct: 679  AGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH 738

Query: 1620 LDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRI 1441
             D+PPV+YTHCELD SFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIG+STTNP+IR+
Sbjct: 739  -DDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRV 797

Query: 1440 DTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQE 1261
            DT SHQLYYPQRPLFRT+++D              LPRPE+FNGQ AIVAVNVHLGYNQE
Sbjct: 798  DTLSHQLYYPQRPLFRTMISD--------------LPRPEYFNGQIAIVAVNVHLGYNQE 843

Query: 1260 DSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLED 1081
            DSLVMNRASLERGMFR+EH+RSYK+EV+N E+  KK+K +D V FGK QSKIGRVDSL+D
Sbjct: 844  DSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDD 903

Query: 1080 DGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ 901
            DGFP++GANLQ GDIVIG+ A SGVDHSIKLKHTERGMVQKVV+S+ND+GKNFAVVSLRQ
Sbjct: 904  DGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQ 963

Query: 900  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXX 721
            VR+PCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ     
Sbjct: 964  VRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 1023

Query: 720  XXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPT 541
                      L++ATPFST SV+ I  QLHR GFSRWG ERVY+GRTGE + SLIFMGPT
Sbjct: 1024 LGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPT 1083

Query: 540  FYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 361
            FYQRL HM+EDKVKFRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHER
Sbjct: 1084 FYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHER 1143

Query: 360  LFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLC 181
            LFTLSDS+ MHICR+C N++NVIQR+V GGRK+RGPYCR+CES E++V+VNVPYGAKLLC
Sbjct: 1144 LFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLC 1203

Query: 180  QELFSMGISLKFDTELC 130
            QELFSMGISLKF+T+LC
Sbjct: 1204 QELFSMGISLKFETQLC 1220


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1675 bits (4338), Expect = 0.0
 Identities = 818/1173 (69%), Positives = 960/1173 (81%), Gaps = 9/1173 (0%)
 Frame = -2

Query: 3621 SAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSF 3442
            ++++ L E +LK FCRKAA SFF +YGL+SHQINSYN+F+K+G+Q+ FDS GE  VEP +
Sbjct: 37   TSLRDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGY 96

Query: 3441 DPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSR 3262
            DPSKKG+G+WRYAS++FG+VTL+ P+FFAG      +G  EH  + PR+ARLQNMTYSSR
Sbjct: 97   DPSKKGEGEWRYASMRFGQVTLDKPSFFAG------NGGDEH-DMFPRHARLQNMTYSSR 149

Query: 3261 IKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSE 3082
            +KV+   QVYT+    SDKFKTG E ++ K VL+D  +D+I GR+PVMVKSDLCWM   E
Sbjct: 150  MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVE 209

Query: 3081 KRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP- 2905
            K DC+FD GGYF+IKGAEK F+AQEQ+CL RLWV+ +  WTVAY+  +KR R+ ++LV  
Sbjct: 210  KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 269

Query: 2904 -KVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASI 2728
             K E+I G +K+L+VYF  TEIPIW+LFFALGVS+D+E+VNLID   ED +I NIL ASI
Sbjct: 270  SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 329

Query: 2727 YDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYM 2548
            +DAD K + FRK  NA+K+++ L+K    PP ES EEC+  YLFP+L   +QKA  L YM
Sbjct: 330  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM 389

Query: 2547 VKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRE 2368
            VKCLL+AY GRRK DNRDD RNK            LK+HI HA + M K++QRDL  DR 
Sbjct: 390  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 449

Query: 2367 LQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQ 2188
            ++PIE+YLDASI+TNGLSRAFSTGAWSHP+K+ ER+SG+VA + R NPLQ   D+R+TRQ
Sbjct: 450  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 509

Query: 2187 QVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFR 2008
            QV YTG+VGDARYPHPSHWGKICFLSTPDGENCGLVKNL   GLVST+IL  E + ++  
Sbjct: 510  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLF 567

Query: 2007 ECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1828
              GMEKL DD S  L GK+K+F+DGDW+G+CKDS SFVS+LRRKRRR E+P QVEIK+D+
Sbjct: 568  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 627

Query: 1827 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTA 1651
               EVRIF+DAGRILRPLLVV+N+ KIK L+G +++FQ+LLD G+IE +G EEEEDC TA
Sbjct: 628  LQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTA 687

Query: 1650 WGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG 1471
            WGIK+L     D  P+++THCELD SFLLGLSCG+IPFANHDHARRVLYQS+KHS QAIG
Sbjct: 688  WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 747

Query: 1470 YSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVA 1291
            + TTNPSIR+DT SHQL+YPQRPLFRT+++DCLGK     +   +LPRPE +NGQ AIVA
Sbjct: 748  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH--ILPRPELYNGQNAIVA 805

Query: 1290 VNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQS 1111
            VNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E   K++  DD+V+FGK QS
Sbjct: 806  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 865

Query: 1110 KIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEG 931
            KIGRVDSL+DDGFP++GANLQ GDIVIGK+A SG DHSIKLKHTERGMVQKVVLSSND+G
Sbjct: 866  KIGRVDSLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDG 925

Query: 930  KNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSR 751
            KNF+VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSR
Sbjct: 926  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 985

Query: 750  QTPGQ------XXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYD 589
            QTPGQ                      +YATPF+TPSV+ IT QLHR GFS+WG ER+YD
Sbjct: 986  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1045

Query: 588  GRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 409
            GRTGE V SLIF+GPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME
Sbjct: 1046 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1105

Query: 408  RDCLIAHGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESV 229
            RDCLIAHGAAANLHERLFTLSDS QMHICRKC NVANVIQR V GGRK+RGPYCR C+S 
Sbjct: 1106 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1165

Query: 228  EDVVRVNVPYGAKLLCQELFSMGISLKFDTELC 130
            +D+V+ NVPYGAKLLCQELFSMGI+LKFDTE C
Sbjct: 1166 DDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1198


>gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1658 bits (4293), Expect = 0.0
 Identities = 814/1166 (69%), Positives = 954/1166 (81%), Gaps = 3/1166 (0%)
 Frame = -2

Query: 3618 AMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFD 3439
            ++Q L E +L+ FC++AA SFF++YGLISHQ+NSYN F+K+G+Q  FDS GE  +   +D
Sbjct: 28   SVQQLGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYD 87

Query: 3438 PSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 3259
            PSKKG+GDWR+A ++FGKVT+E PTF+A      V G  E L + PR+ARLQNMTYSSR+
Sbjct: 88   PSKKGEGDWRHARVRFGKVTVERPTFWA------VSGGNE-LNMLPRHARLQNMTYSSRM 140

Query: 3258 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 3079
            KV   LQVYT    +SDKFKTG E FV++ V+   + D+I GR+PVMV+SDLCWMN  EK
Sbjct: 141  KVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEK 200

Query: 3078 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-- 2905
             DC+FD GGYF+IKG EK FIAQEQ+ + RLW++ +  WT+AYR   KR R+ I+LV   
Sbjct: 201  ADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENS 260

Query: 2904 KVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2725
            KVE I G +K+LTVYF  TEIP+WVLFFALGVS+D+EVVNLID +  DS+I NIL ASI 
Sbjct: 261  KVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIR 320

Query: 2724 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2545
            +AD K   F +  NA+ ++  L+K  + PP+E +EEC+  YLFP L S +QKA  L YMV
Sbjct: 321  NADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMV 380

Query: 2544 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2365
            KCLL+AY GR K DNRDD RNK            LK+HI HA R M K++QRDL  DR +
Sbjct: 381  KCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTV 440

Query: 2364 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2185
            +PIEHYLDASI+TNGLSRAFSTGAWSHPYK+MER+SGVVA + R NPLQ   D+RKTRQQ
Sbjct: 441  RPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQ 500

Query: 2184 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 2005
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST I+  ES++ +  +
Sbjct: 501  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIM--ESIVDKLFD 558

Query: 2004 CGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1825
             GME+L +D  S LDGK K+FL+G+WVG+C+DS SF +++RRKRR  E P+QVEIK+D+H
Sbjct: 559  SGMEELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEH 618

Query: 1824 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1648
             GEVRIF D GRILRPLLVV NL +IK  KG+ ++FQ+LL+ G+IE +G EEEEDC+TAW
Sbjct: 619  KGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAW 678

Query: 1647 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 1468
             IK+L T      PV+YTHCELD SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+
Sbjct: 679  SIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGF 738

Query: 1467 STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 1288
            STTNP+IR+DT SHQLYYPQRPLFRT+ +DCLGK      QK +LP+PE +NGQ AIVAV
Sbjct: 739  STTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAV 798

Query: 1287 NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 1108
            NVHLGYNQEDSLVMNR+SLERGMFR+EHVRSYKAEV+N E   K++K +D+V+FGK QSK
Sbjct: 799  NVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSK 858

Query: 1107 IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 928
            IGRVDSL+DDGFPYVGANLQ GDIVIG+ A SG DHSIKLKHTERGMVQKVVLSSND+GK
Sbjct: 859  IGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGK 918

Query: 927  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 748
            N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 919  NYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQ 978

Query: 747  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKV 568
            TPGQ               +KYATPFST SV+ IT QLHR GFSRWG+ERVY+GRTGE V
Sbjct: 979  TPGQLLEAALGKGIACGGSMKYATPFSTISVDAITEQLHRAGFSRWGNERVYNGRTGEMV 1038

Query: 567  HSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 388
             SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKR+GGIKFGEMERDCLIAH
Sbjct: 1039 RSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAH 1098

Query: 387  GAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVN 208
            GA+ANLHERL TLSDSSQMH+CR C NVANVI+RAV GGRKIRGPYCR C+SV+D+VRVN
Sbjct: 1099 GASANLHERLVTLSDSSQMHVCRNCKNVANVIERAVPGGRKIRGPYCRGCQSVDDIVRVN 1158

Query: 207  VPYGAKLLCQELFSMGISLKFDTELC 130
            VPYGAKLLCQELFSMGI+LKF+T+LC
Sbjct: 1159 VPYGAKLLCQELFSMGINLKFETQLC 1184


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1642 bits (4251), Expect = 0.0
 Identities = 811/1174 (69%), Positives = 955/1174 (81%), Gaps = 7/1174 (0%)
 Frame = -2

Query: 3630 ELGSAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVE 3451
            +  +++  L EG+LK FC++AA +FF +YGLISHQINSYNDF+K+GIQ+VFDS GEI VE
Sbjct: 38   DYSTSIHDLGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVE 97

Query: 3450 PSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTY 3271
            P +DPSKKG+ +WRYAS+KFGKVTL  P+F+ G      D  +E+ K+ PR+ARLQNM+Y
Sbjct: 98   PGYDPSKKGESEWRYASVKFGKVTLGMPSFWGGS-----DDEKEY-KMLPRHARLQNMSY 151

Query: 3270 SSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMN 3091
            +S++KV   ++VYT+ L  SDKFKTG   ++DK +L+    D+I G +PVMVKSDLCWM 
Sbjct: 152  ASKMKVNITVEVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMK 211

Query: 3090 SSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKL 2911
              EK DC+FD GGYF+IKGAEKTFIAQEQ CL RL +T     TVAYR   KR R+ I+L
Sbjct: 212  DFEKGDCDFDHGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRL 271

Query: 2910 V--PKVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILI 2737
            V   K+ENI G +K+LTVYF  TEIP+W+ FFALGVS+DREV+NLID D ED++I+NIL 
Sbjct: 272  VGISKLENIEGVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILF 331

Query: 2736 ASIYDADKKYE----GFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQK 2569
            ASI DADK  +    GFR+  NA+K+++++++    PP ES+EECI  YLFPNL   +QK
Sbjct: 332  ASIRDADKLNDKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQK 391

Query: 2568 ACLLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQR 2389
            A  L YMVK LL+AY GRRK DNRDD RNK            LK HI HA R M K++QR
Sbjct: 392  ARFLGYMVKSLLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQR 451

Query: 2388 DLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATA 2209
            DL  DR ++PIEHYLDASI+TNG+SRAFSTGAW HP+K+MER+SGVVAT+ R NPLQ   
Sbjct: 452  DLYGDRAVRPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMV 511

Query: 2208 DMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQE 2029
            DMRKTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST +L  E
Sbjct: 512  DMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVL--E 569

Query: 2028 SLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQ 1849
            SL+ +   CGMEKL DD  + L GK K+FL+GDWVG+C+DS SFV +LRR RRR ++P+Q
Sbjct: 570  SLIPQLLTCGMEKLVDDTFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQ 629

Query: 1848 VEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEE 1672
            VEIK+D H GEVRIF DAGRILRPLLVV+NL K+K  KG   SFQ  LD+G+IE IG EE
Sbjct: 630  VEIKRDVHQGEVRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEE 689

Query: 1671 EEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEK 1492
            EEDC TAWGIK+LF  +      ++THCELD SFLLGLSCG+IP+ANHDHARRVLYQ++K
Sbjct: 690  EEDCSTAWGIKYLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQK 749

Query: 1491 HSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFN 1312
            HSQQAIG+STTNP++R+DT SHQL+YPQRPLF+T+ +DCLGK     H + ++P+PE++N
Sbjct: 750  HSQQAIGFSTTNPNLRVDTLSHQLHYPQRPLFQTMTSDCLGKP--GRHNR-IVPKPEYYN 806

Query: 1311 GQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLV 1132
            GQ AIVAVNVHLG+NQEDS+VMNRASLERGMFR+EH+RSYKAEV+N E+  K++K DD V
Sbjct: 807  GQNAIVAVNVHLGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNKESLDKRRKPDDCV 866

Query: 1131 SFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVV 952
            +FGK QSK GRVDSL+DDGFPYVGANLQ+GDI+IG+ + SG DHSIKLKHTERGMVQKV+
Sbjct: 867  NFGKMQSKFGRVDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVL 926

Query: 951  LSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVIN 772
            LSSND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QG+VPDIVIN
Sbjct: 927  LSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVIN 986

Query: 771  PHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVY 592
            PHAFPSRQTPGQ                +YATPFST SV+DIT QLH  GFSRWG+ERVY
Sbjct: 987  PHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHSAGFSRWGNERVY 1046

Query: 591  DGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 412
            +G TG  V SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM
Sbjct: 1047 NGATGAMVRSLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1106

Query: 411  ERDCLIAHGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCES 232
            ERDCLIAHGA+ANLHERLFTLSDSSQMH+C+KC NVA VI R V GGRKIRGP+CR C+S
Sbjct: 1107 ERDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVAYVILRTVAGGRKIRGPHCRICDS 1166

Query: 231  VEDVVRVNVPYGAKLLCQELFSMGISLKFDTELC 130
             +D+VRVNVPYGAKLLCQELFSMGISLKF+T  C
Sbjct: 1167 ADDLVRVNVPYGAKLLCQELFSMGISLKFETRFC 1200


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1630 bits (4221), Expect = 0.0
 Identities = 813/1127 (72%), Positives = 930/1127 (82%), Gaps = 15/1127 (1%)
 Frame = -2

Query: 3732 LEEAGPSS-KEKFANGSTQMEIXXXXXXXXXXXXDELGS-----------AMQGLDEGYL 3589
            +EE G SS KEK +NGST+M+              +               ++ L E +L
Sbjct: 1    MEEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGESFL 60

Query: 3588 KMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWR 3409
            K FC+KA+T FFEKYG ISHQINSYNDF+ +GIQ+VFDSVGEI VEP +DPSK+GDGDW+
Sbjct: 61   KNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWK 120

Query: 3408 YASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYT 3229
            +AS+KFGKVTLE P F+AGEKFS V G +E+L L PR+ARLQNMTYS+RI VETH+QVYT
Sbjct: 121  HASVKFGKVTLERPKFWAGEKFS-VGGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYT 179

Query: 3228 KGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGY 3049
            K L RSDKFKTGV+ FVDK    +   DV+ GR+PVMV S+LCWMN  +K DCEFD GGY
Sbjct: 180  KKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGY 239

Query: 3048 FVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGADK 2875
            F+ KGAEKTFIAQEQ+CL RLWV+  PTW V YRP  KRKRVYIKL    K+E+I G +K
Sbjct: 240  FIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEK 299

Query: 2874 ILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFR 2695
             L+VY  + E+PIWVLFFALGVS+DREVVNLID+DIED+ I NIL+ASI++ADK  E FR
Sbjct: 300  ALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFR 358

Query: 2694 KEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGR 2515
            K   A+ +++ L+K+ K PP+ESVEECI  YLFPNLS  +QKA  L YMVKCLL ++ GR
Sbjct: 359  KGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGR 418

Query: 2514 RKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDAS 2335
            RKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QPIEHYLDAS
Sbjct: 419  RKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDAS 478

Query: 2334 IITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDA 2155
            IITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TADMRK+RQQV+YTG+VGDA
Sbjct: 479  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDA 538

Query: 2154 RYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDM 1975
            RYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVST IL+    L+    CGM+KL DD 
Sbjct: 539  RYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKLVDDC 596

Query: 1974 SSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDA 1795
            S+ L GK K+ LDG+WVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+  GEVRIF D 
Sbjct: 597  STSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDP 656

Query: 1794 GRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAEL 1618
            GRILRPLLVV NLKKIK LKG D+ FQSLLD+G+IE IGPEEEEDC+TAWG++++  A+ 
Sbjct: 657  GRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADK 716

Query: 1617 DNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRID 1438
            +NPP +YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST NP+ R+D
Sbjct: 717  ENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVD 776

Query: 1437 TNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQED 1258
            TN+HQLYYPQRPLFRT+LAD LGK K + +QK MLPRPE+FNGQCAIVAVNVHLGYNQED
Sbjct: 777  TNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQED 836

Query: 1257 SLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDD 1078
            SLVMNRASLERGMFR+EHVRSYKAEV+N EA  KK KI+D V+FGKTQSKIGRVDSL+DD
Sbjct: 837  SLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDD 896

Query: 1077 GFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQV 898
            GFP++GANLQ+GDI+IGK + SG DHS+KLKHTERGMVQKV+LS+NDEGKNFAVVSLRQV
Sbjct: 897  GFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQV 956

Query: 897  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXX 718
            RSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ      
Sbjct: 957  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 1016

Query: 717  XXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTF 538
                      KYATPFST SV+ I  QL   GF+RWG+ERVY+GRTGE VHSLIFMGPTF
Sbjct: 1017 GKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTF 1076

Query: 537  YQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 397
            YQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1077 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1123


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1625 bits (4208), Expect = 0.0
 Identities = 808/1203 (67%), Positives = 955/1203 (79%), Gaps = 4/1203 (0%)
 Frame = -2

Query: 3726 EAGPSSK-EKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATSFFE 3550
            + G SSK EK    ST M+I             +  +++  + E  LK FC KAAT FF 
Sbjct: 13   DIGTSSKTEKLFKASTDMDIDFDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAATLFFN 72

Query: 3549 KYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEH 3370
            +YGLISHQINSYNDF+ +GIQ+ FDS GE+ VEP +DPSKKG+ +WRYAS+KFGKV LE 
Sbjct: 73   EYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVALEK 132

Query: 3369 PTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGV 3190
            PTF++G          EH K+ PR+ARLQNMTYSS++KV   ++VYT+ + RSDKFKTG 
Sbjct: 133  PTFWSGA--------DEH-KMLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGK 183

Query: 3189 ENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQ 3010
            + +VDK VLN  + ++  G LPVMVKSDLCWM ++EK DC+FD GGYF+IKGAEK FIAQ
Sbjct: 184  DQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQ 243

Query: 3009 EQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLV--PKVENIMGADKILTVYFYVTEIPI 2836
            EQ+CL RLW++    WTV+Y+   KR R+ ++LV    +E++    K LTVYF  TEIP+
Sbjct: 244  EQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEIPL 303

Query: 2835 WVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLM 2656
            W+LFFALGV++D+EV++LI     D+ I NI  ASI+DAD+K EGFR+   A++++   +
Sbjct: 304  WILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKTEGFRRGKEALEYVVRQI 363

Query: 2655 KSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRNKX 2476
            +  + PP E+ E+    YLFP L S RQKA  L YMVKCLL+AY G+RK +N D  RNK 
Sbjct: 364  RGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKR 422

Query: 2475 XXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTG 2296
                       LK+HI HA R M K++Q+DL  DR+++PIEHYLDASI+TNGLSRAFSTG
Sbjct: 423  FELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTG 482

Query: 2295 AWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICF 2116
            AWSHPYK+MER+SGVVA + R NPLQ   D+RKTR  V YTG+VGDAR+PHPSHWG++CF
Sbjct: 483  AWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCF 542

Query: 2115 LSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLD 1936
            LSTPDGENCGLVKNLA+ GLVS  IL  E L+ +    GMEK+ +D  S LD K K+FL+
Sbjct: 543  LSTPDGENCGLVKNLATTGLVSVNIL--EPLIDKLIARGMEKVPEDSHSDLDEKDKVFLN 600

Query: 1935 GDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNL 1756
            G+WVG+C+DS  FV++LRR RRR ++P QVEIK+D+   EVRIF DAGRILRPLLVVQNL
Sbjct: 601  GEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNL 660

Query: 1755 KKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELD 1579
             KI+  KG + +FQSLLD G+IEF+G EEEEDC TAWGIK L +       ++YTHCELD
Sbjct: 661  HKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELD 720

Query: 1578 SSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPL 1399
             SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+ TTNP+IR+DT SHQLYYPQRPL
Sbjct: 721  MSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPL 780

Query: 1398 FRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGM 1219
            FRT+ +DCLGK   +     ++P+PE +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGM
Sbjct: 781  FRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 840

Query: 1218 FRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGD 1039
            FR+EH+RSYKA+V+N E   K++K DD V+FGK  SKIGRVDSL+DDGFP++GANLQ+GD
Sbjct: 841  FRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGD 900

Query: 1038 IVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMH 859
            IVIG+ A SG DHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMH
Sbjct: 901  IVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMH 960

Query: 858  GQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYA 679
            GQKGVLGFLESQENFPFT+QGIVPDIVINPH+FPSRQTPGQ               +KYA
Sbjct: 961  GQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYA 1020

Query: 678  TPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVK 499
            TPFST SVE IT QLHR GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HM+EDKVK
Sbjct: 1021 TPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVK 1080

Query: 498  FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICR 319
            FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSSQMHIC+
Sbjct: 1081 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQ 1140

Query: 318  KCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISLKFDT 139
            KC NVANVIQRAV GGRKIRGPYCR CESV+++V+VNVPYGAKLLCQELFSMGISLKF+T
Sbjct: 1141 KCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFET 1200

Query: 138  ELC 130
             LC
Sbjct: 1201 RLC 1203


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1622 bits (4199), Expect = 0.0
 Identities = 802/1205 (66%), Positives = 956/1205 (79%), Gaps = 3/1205 (0%)
 Frame = -2

Query: 3738 DFLEEAGPSSKEKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATS 3559
            D++E+ GPSSK +  +    M++            +ELG          L+ FC+KAA+ 
Sbjct: 6    DYMEDVGPSSKGEVDD----MDMDMDEDLMDTTNLNELGKET-------LQSFCKKAASL 54

Query: 3558 FFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVT 3379
            FF++YGLISHQINSYN F+  G+Q+VFDS GE+ VEP +D SK+ DG+WR AS++FGKVT
Sbjct: 55   FFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVT 114

Query: 3378 LEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFK 3199
            L+ P+F+ G    +     EH  + PR+ARLQNMTYS+R+K+  ++QVYT+ + RSDKFK
Sbjct: 115  LDRPSFWGGTSSDA-----EH-NMFPRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFK 168

Query: 3198 TGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTF 3019
            TG++  V K V++  + ++I GR+PVMVKSDLCW+ + EK DC+FD GGYF+IKGAEK F
Sbjct: 169  TGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGGYFLIKGAEKVF 228

Query: 3018 IAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGADKILTVYFYVTE 2845
            IAQEQ+C+ RLW++ +  WTV+Y+   KR R+ ++LV   K+E I G  K L VYF  TE
Sbjct: 229  IAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTE 288

Query: 2844 IPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIE 2665
            IP+W+LFFALGV +D+EV++LID    D++I NI  ASI+DAD+K E FR+E  A+ +++
Sbjct: 289  IPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVD 348

Query: 2664 DLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLR 2485
             L+K  + PPKES+E+ I  YLFP L+S R KA  L YMVKCLLEAY G RK DNRD  R
Sbjct: 349  KLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFR 408

Query: 2484 NKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAF 2305
            NK            LK+H+ HA R M K++QRDL  DR++ PIEHYLDASI+TNGL+RAF
Sbjct: 409  NKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAF 468

Query: 2304 STGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGK 2125
            STGAW HP+K MERVSGVV  + R NPLQ   D+RKTRQQV YTG+VGDARYPHPSHWG+
Sbjct: 469  STGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGR 528

Query: 2124 ICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKI 1945
            +CFLSTPDGENCGLVKNLA  G+VST I   ESL+ +  + GMEKL DD  + LDGK+K+
Sbjct: 529  VCFLSTPDGENCGLVKNLAVTGVVSTNI--SESLVDKLFDSGMEKLVDDTYTKLDGKHKV 586

Query: 1944 FLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVV 1765
            FL+G+WVG+C+DS  FV +LR  RRR E+PYQVEIK+D+   EVRIF DAGRILRPLLVV
Sbjct: 587  FLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVV 646

Query: 1764 QNLKKIKDLK-GDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHC 1588
            +NL KIK  K G++ F SLLD G+IEFIG EEEEDC TAWGIK L        P++Y+HC
Sbjct: 647  ENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYSHC 706

Query: 1587 ELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQ 1408
            ELD SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+STTNP+IR+DT SHQL+YPQ
Sbjct: 707  ELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQ 766

Query: 1407 RPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLE 1228
            RPLFRT+++DCL           +LP+PE FNGQ AIVAVNVHLGYNQEDSLVMNRASLE
Sbjct: 767  RPLFRTMISDCL-----------VLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLE 815

Query: 1227 RGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQ 1048
            RGMFR+EH+RSYKAEV+N E   K++K +D ++FGK QSKIGRVDSL+DDGFP++GAN+Q
Sbjct: 816  RGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQ 875

Query: 1047 TGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFS 868
            +GDIVIGK A SG DHS+KLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFS
Sbjct: 876  SGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFS 935

Query: 867  SMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXL 688
            SMHGQKGVLGFLESQENFPFT QG+VPDIVINPHAFPSRQTPGQ                
Sbjct: 936  SMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSK 995

Query: 687  KYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSED 508
            +YATPFST SV+DI  QLHR  FSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HM+ED
Sbjct: 996  RYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAED 1055

Query: 507  KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMH 328
            KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSS+MH
Sbjct: 1056 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSEMH 1115

Query: 327  ICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISLK 148
            IC+KC NVANVIQR V GGRKIRGPYCR CESV+D+V+V+VPYGAKLLCQELFSMGISLK
Sbjct: 1116 ICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPYGAKLLCQELFSMGISLK 1175

Query: 147  FDTEL 133
            FDT +
Sbjct: 1176 FDTRV 1180


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1621 bits (4197), Expect = 0.0
 Identities = 801/1170 (68%), Positives = 941/1170 (80%), Gaps = 3/1170 (0%)
 Frame = -2

Query: 3630 ELGSAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVE 3451
            E  + +  L E +L  FC++A+ SFF++YGL+SHQINSYNDFV++GIQ+VFDS GEI VE
Sbjct: 41   EDSTTLHDLGEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVE 100

Query: 3450 PSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTY 3271
            P+FDPSKKG+ DWR+A++KFGKVTL  P F+ G      D  +E+  L PR+ARLQNMTY
Sbjct: 101  PNFDPSKKGNADWRFAAIKFGKVTLSKPCFWGGS-----DSDKEYNML-PRHARLQNMTY 154

Query: 3270 SSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMN 3091
            S+R+ V   +QVYT+ L  SDKFKTG E  ++KT L+    D+I GR+PVMVKS+LCWM 
Sbjct: 155  SARMSVNITVQVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMK 214

Query: 3090 SSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKL 2911
              EK DCEFDQGGYF+I GAEKTFIAQEQ CL RL +T +   TVAYR   KR R+ I+L
Sbjct: 215  GVEKGDCEFDQGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRL 274

Query: 2910 --VPKVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILI 2737
              + K+EN+ G +K+L+VYF  TEIP+W+ FFALGVS+D+EV++LID  IED++I+NIL 
Sbjct: 275  SGISKLENVEGVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILF 334

Query: 2736 ASIYDADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLL 2557
            ASI DAD++ + FR+  NA++++E+ +KS   PP ESVE+CI  YLFPN+   +QKA  L
Sbjct: 335  ASIRDADERKDDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFL 394

Query: 2556 AYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDR 2377
             YMVKCLL+   G RK DNRDD RNK            LK H+ HA R M K++QRDL  
Sbjct: 395  GYMVKCLLQTSIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHARRKMAKALQRDLGG 454

Query: 2376 DRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRK 2197
            D  ++P+EHYLDASI+TNG+SRAFSTGAW HP+K+MER+SGVVA I R NPLQ   DMRK
Sbjct: 455  DHVVRPVEHYLDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIGRANPLQTMIDMRK 514

Query: 2196 TRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQ 2017
            TRQQV YTG+ GDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+  LVS  I   E +L 
Sbjct: 515  TRQQVQYTGKAGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTALVSINI--SEPILP 572

Query: 2016 RFRECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIK 1837
            +  +CG+E+L DD  + L GK+K+FL+GDWVGIC DS  FV+KLRR RR  ++P+QVEIK
Sbjct: 573  KLFKCGIEELVDDTYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRLRRSKKLPHQVEIK 632

Query: 1836 KDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDC 1660
            +D+H GEVRIF DAGRILRPLLVVQ LKKIK  KG+  +FQ  LD G+IEFIG EEEEDC
Sbjct: 633  RDEHKGEVRIFSDAGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDC 692

Query: 1659 QTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQ 1480
            +TAW IK+LF  E     V+YTHCELD SFLLGLSCG+IPFANHDHARRVLYQS+KHSQQ
Sbjct: 693  RTAWAIKYLFMEE-QGSVVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQ 751

Query: 1479 AIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCA 1300
            AIGYSTTNP++R+DT SH L+YPQRPLFRT++AD LGK          +P+PE+FNGQ A
Sbjct: 752  AIGYSTTNPNLRVDTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNA 811

Query: 1299 IVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGK 1120
            IVAVNVHLGYNQEDS+VMNRASLERGMFR+EH+RSYKAEVEN  +  K++K D+ V+FGK
Sbjct: 812  IVAVNVHLGYNQEDSIVMNRASLERGMFRSEHIRSYKAEVENKLSLEKRRKPDECVNFGK 871

Query: 1119 TQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSN 940
             QSK GRVD+L+DDGFP VGA+LQ+GDI+IG+ + SG DHSIKLKHTERGMVQKVVLSSN
Sbjct: 872  IQSKFGRVDNLDDDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHTERGMVQKVVLSSN 931

Query: 939  DEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAF 760
            D GKNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLE QENFPFT QGIVPDIVINPHAF
Sbjct: 932  DAGKNFAVVSLRQVRSPSLGDKFSSMHGQKGVLGFLEYQENFPFTIQGIVPDIVINPHAF 991

Query: 759  PSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRT 580
            PSRQTPGQ                +YATPFST SV+DIT QLHR GFSRWG+ERVY+GRT
Sbjct: 992  PSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDITDQLHRAGFSRWGNERVYNGRT 1051

Query: 579  GEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 400
            GE V  LIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC
Sbjct: 1052 GEMVRQLIFMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1111

Query: 399  LIAHGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDV 220
            LIAHGA+ANLHERLFTLSDSS M++C+KC N ANVI+R + GGRKIRGPYCR C+S +D+
Sbjct: 1112 LIAHGASANLHERLFTLSDSSLMNVCQKCQNAANVIERKLTGGRKIRGPYCRVCDSADDI 1171

Query: 219  VRVNVPYGAKLLCQELFSMGISLKFDTELC 130
            VRVNVPYGAKLLCQELFSMGISLKF+T LC
Sbjct: 1172 VRVNVPYGAKLLCQELFSMGISLKFETRLC 1201


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1605 bits (4157), Expect = 0.0
 Identities = 798/1166 (68%), Positives = 935/1166 (80%), Gaps = 4/1166 (0%)
 Frame = -2

Query: 3615 MQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDP 3436
            ++ L +  ++ FC+KA+  FF++YGLISHQINSYN F   G+Q  FDS G++TV P FDP
Sbjct: 44   LKELGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDP 103

Query: 3435 SKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 3259
            SKKGD + +RYAS+KFGKVTL+ P F+ GE      G  + +K+ PR+ARLQ MTY+S++
Sbjct: 104  SKKGDNEHYRYASVKFGKVTLDRPMFWCGE------GNTQEMKMLPRHARLQRMTYASKM 157

Query: 3258 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 3079
            KV   +QVY     RSDKFKTG E ++D+ ++ D + ++  GRLPVMVKSDLCWMN  EK
Sbjct: 158  KVNVQVQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEK 217

Query: 3078 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVPK- 2902
             DCEFD GGYF+IKGAEK FIAQEQ+ L RLWVT  P W VAY+   KR R+ +KLV   
Sbjct: 218  GDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENT 277

Query: 2901 -VENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2725
             VE I   +K+LTVYF   EIP+W+LFFALGV++D+++V+LID    D  I NIL ASI 
Sbjct: 278  TVEGIKNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIR 337

Query: 2724 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2545
            +AD+K E FR+  NA+ +IE+ +K V+ PP ES++EC+  Y+FPN+    +KA  LAYMV
Sbjct: 338  EADEKCEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMV 397

Query: 2544 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2365
            K LL AY GRRK DNRDD RNK            LK+HI HA + M K++QRDL  DR++
Sbjct: 398  KVLLLAYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDV 457

Query: 2364 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2185
              IEHYLDASIITNGL RAFSTGAW+HPYK+MER+SGVVAT+ RTNPLQ  A++R+TRQQ
Sbjct: 458  HQIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQ 517

Query: 2184 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 2005
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A  GLVST +   ES+L +   
Sbjct: 518  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNV--TESILPQLFA 575

Query: 2004 CGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1825
            CGME+L DD +++L  K K+FL+GDWVG+C DS+SFV++LR +RR+ E+P+QVEIK+D  
Sbjct: 576  CGMEELVDDTTAVLGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPS 635

Query: 1824 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1648
              EVRI  DAGRILRPLLVV NL KIK  K D  SFQSLLD+G+IE IGPEEEEDC+TAW
Sbjct: 636  QEEVRILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAW 695

Query: 1647 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 1468
            G+ +LF  E     V+YTHCELD SFLLGLSC L+PFANHDHARRVLYQS+KHS QAIG+
Sbjct: 696  GVPYLFGKE-GKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGF 754

Query: 1467 STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 1288
            STTNP IR+D  SHQL+YPQ+PLF+T+ +DCLGK       K +LP+ EF+NGQ AIVAV
Sbjct: 755  STTNPDIRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSK-LLPKSEFYNGQNAIVAV 813

Query: 1287 NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 1108
            NVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYKAE EN E+  KK+K +D+V+FGK QSK
Sbjct: 814  NVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKRKPEDIVNFGKIQSK 873

Query: 1107 IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 928
            IGRVDSL+DDGFP+VGANLQ GDI+IG+ A SG DHSIKLKHTERG VQKVVLSSNDEGK
Sbjct: 874  IGRVDSLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGK 933

Query: 927  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 748
            NFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ
Sbjct: 934  NFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 993

Query: 747  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKV 568
            TPGQ               L+ ATPFST SVE IT QLHR GFSRWG+ERVY+GRTGE V
Sbjct: 994  TPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMV 1053

Query: 567  HSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 388
             SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH
Sbjct: 1054 RSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1113

Query: 387  GAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVN 208
            GA+ANL+ERLFTLSDSSQ+HIC KC NVANVI R V GGRKIRGPYCRFCES +D+V  +
Sbjct: 1114 GASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVAH 1173

Query: 207  VPYGAKLLCQELFSMGISLKFDTELC 130
            VPYGAKLLCQELFSMGI+LKF+TELC
Sbjct: 1174 VPYGAKLLCQELFSMGINLKFETELC 1199


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1600 bits (4144), Expect = 0.0
 Identities = 781/1166 (66%), Positives = 932/1166 (79%), Gaps = 7/1166 (0%)
 Frame = -2

Query: 3606 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 3427
            L E +LK FC+K++ +FF +YGLISHQINSYNDF+K+GIQ+ FD  G+I V+P +DPSKK
Sbjct: 43   LGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK 102

Query: 3426 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 3247
            GDG+WRYA++KFGKVTL+ P F+ G          +   + PR+ARLQNMTYSSR+K+  
Sbjct: 103  GDGEWRYATVKFGKVTLDKPKFWGGAASG------KEYNMLPRHARLQNMTYSSRMKINI 156

Query: 3246 HLQVYTKGLSRSDKFKTGVENFVDKTVLNDY--HSDVIFGRLPVMVKSDLCWMNSSEKRD 3073
             L++YT+ L  SDKFKTG + +VDK  +     + DV  GRLPVMV SDLCWM   +KRD
Sbjct: 157  SLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRD 216

Query: 3072 CEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KV 2899
            CEFD+GGYF+IKGAEK FIAQEQ+CL RLW++    WTVAYR   KR R+ I+LV   K 
Sbjct: 217  CEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKS 276

Query: 2898 ENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASI--Y 2725
            E++   +K+L VYF  TE+P+W+LFFALGVS+D+E+V+LID   +D  + NIL AS+   
Sbjct: 277  EDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREV 336

Query: 2724 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2545
            D D K++ FR+   A+  +++ ++    PP + +E+C+  YLF +L   +QK   L YMV
Sbjct: 337  DNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMV 396

Query: 2544 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2365
            KCLL+AY GRRK DNRDD RNK            LK+HI HA R M K++QRDL  DR++
Sbjct: 397  KCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV 456

Query: 2364 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2185
             PIEHYLDASIITNGLSRAFSTGAW+H +K+MER+SGVVAT+ R NPLQ  A++R+TRQQ
Sbjct: 457  HPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQ 516

Query: 2184 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 2005
            V+YTG+VGDARYPHPSHWG++CFLSTPDGENCGL+KNL+  GLVS     ++S+      
Sbjct: 517  VAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNT--KKSITPTLFR 574

Query: 2004 CGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1825
            CGME L D+ S+   GKY+IFLDG+WVG+C+DS SFV+ +RRKRRR    +QVE+K+D+ 
Sbjct: 575  CGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQ 634

Query: 1824 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1648
              EVRIF DAGRILRPLLVV+NL +I   KG+ ++FQSLLD G+IE IG EEEEDC+ AW
Sbjct: 635  LKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAW 694

Query: 1647 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 1468
             IKHL     D    +Y+HCELD SFLLGLSCGL+PFANHDHARR L+QS+KHS QAIG+
Sbjct: 695  SIKHLME---DEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGF 751

Query: 1467 STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 1288
            S TN + R+DT SHQL+YPQRPLFRT+ ADCLG          +LP+PEF+NGQ AIVAV
Sbjct: 752  SPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAV 811

Query: 1287 NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 1108
            NVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E+  K++K DD ++FGKTQSK
Sbjct: 812  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSK 871

Query: 1107 IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 928
            IGRVDSL+DDGFPY+GANLQ+GDIVIG+ A SG DHSIKLKHTE+GMVQKVVLSSND+GK
Sbjct: 872  IGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGK 931

Query: 927  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 748
            N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 932  NYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 991

Query: 747  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKV 568
            TPGQ               LKYATPFSTPSV+ IT QLHR GFSRWG ERVY+GRTGE +
Sbjct: 992  TPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMM 1051

Query: 567  HSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 388
             SLIFMGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH
Sbjct: 1052 RSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1111

Query: 387  GAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVN 208
            GA+ANLHERLFTLSDSSQMH+C+KC NVA+VIQR+V GGRK+RGPYCR CES +D+VRVN
Sbjct: 1112 GASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIVRVN 1171

Query: 207  VPYGAKLLCQELFSMGISLKFDTELC 130
            VPYGAKLLCQELFSMGI+LKF+T+LC
Sbjct: 1172 VPYGAKLLCQELFSMGINLKFETQLC 1197


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1589 bits (4115), Expect = 0.0
 Identities = 786/1167 (67%), Positives = 935/1167 (80%), Gaps = 5/1167 (0%)
 Frame = -2

Query: 3615 MQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDP 3436
            ++ L E  +K +C+KA+  FF++YGLISHQINS+N FV  G+Q  FDS G++ V P FDP
Sbjct: 46   LEELGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDP 105

Query: 3435 SKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 3259
            SKKG+ + +RYAS+KFGKV L+ P F+ GE      G  +  K+ PR+AR+Q MTY+S++
Sbjct: 106  SKKGENEHFRYASVKFGKVKLDKPMFWGGE------GNAQEFKMLPRHARIQRMTYASKV 159

Query: 3258 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 3079
            K++  +QVY     RSDKFKTG E F+D+ ++ +   ++I GRLPVMVKSDLCWM  +EK
Sbjct: 160  KIQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEK 219

Query: 3078 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLV--P 2905
             D EFD GGYF++KGAEKTFIAQEQ+ L RLWV  +P W +AY+   KR R+ IKLV   
Sbjct: 220  DDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNS 279

Query: 2904 KVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2725
            + E +   D  LTVYF   E+P+WVLFFALGVS+D+E+V+LI    +D  I NIL AS+ 
Sbjct: 280  RSEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVR 339

Query: 2724 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2545
            DAD+K   FR+  NAV+++E  +KSV+ PP ES++EC++ Y+FP +S   +KA  LAYMV
Sbjct: 340  DADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMV 399

Query: 2544 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2365
            K LL AY GRRK DNRDD RNK            LK+H+ HA + M K++QRDL  DR++
Sbjct: 400  KGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDV 459

Query: 2364 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2185
            +PIEHYLDASIITNGL RAFSTGAWSHPYK+MER+SGVVA + RTNPLQ  A++R+ RQQ
Sbjct: 460  RPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQ 519

Query: 2184 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQ-QESLLQRFR 2008
            V YTG+VGDARYPHPSHWGK+CFL+TPDGENCGLVKNL+  GLVST +    ES+L +  
Sbjct: 520  VQYTGKVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLV 579

Query: 2007 ECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1828
            +CGM++L DD S+ L    K+ L+GDWVG+C DSSSFV++LR +RRR E+P+QVEIK+D+
Sbjct: 580  DCGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQ 639

Query: 1827 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTA 1651
               EVRI+ DAGRILRPLLVV NL KIK  K D +SFQSLLD GVIE IGPEEEEDC TA
Sbjct: 640  SQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTA 699

Query: 1650 WGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG 1471
            WG+++LF  E     V+YTHCELD SFLLGLSC L+PFANHDHARRVLYQS+KHS QAIG
Sbjct: 700  WGVEYLFGKE-GKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIG 758

Query: 1470 YSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVA 1291
            +STTNP+IR+DT SHQL+YPQ+PLFRT+ +DCLGK   S  Q  + P+ EF+NGQ AIVA
Sbjct: 759  FSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVA 818

Query: 1290 VNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQS 1111
            VNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK+E++N E+  KK+K +D+V+F K QS
Sbjct: 819  VNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQS 878

Query: 1110 KIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEG 931
            KIGRVDSL+DDGFPYVGANLQ+GDI+IGK A SG D+S+KLKHTERG VQKVVLSSNDEG
Sbjct: 879  KIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEG 938

Query: 930  KNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSR 751
            KNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT+QGIVPDIVINPHAFPSR
Sbjct: 939  KNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSR 998

Query: 750  QTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEK 571
            QTPGQ               LK ATPFSTPSV+ IT QLHR GFSRWG+ERVY+GRTGE 
Sbjct: 999  QTPGQLLEAALGKGIACGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEM 1058

Query: 570  VHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 391
            V SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA
Sbjct: 1059 VRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1118

Query: 390  HGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRV 211
            HGA+ANL+ERLFTLSDSSQ+HIC KC  VANVI R V GGRKIRGPYCR CES +D+V  
Sbjct: 1119 HGASANLYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRGPYCRHCESADDIVVA 1178

Query: 210  NVPYGAKLLCQELFSMGISLKFDTELC 130
            +VPYGAKLLCQELFSMGI+LKF+T+LC
Sbjct: 1179 HVPYGAKLLCQELFSMGINLKFETQLC 1205


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score = 1589 bits (4114), Expect = 0.0
 Identities = 785/1207 (65%), Positives = 948/1207 (78%), Gaps = 4/1207 (0%)
 Frame = -2

Query: 3738 DFLEEAGPSSKEKFANGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATS 3559
            D  E+   SSK +  +GS  M+I             ELG       E +L+ FC++A+TS
Sbjct: 6    DAKEDVAMSSKGEKFSGSVDMDIDDEEEFNELTSIKELG-------EVFLQNFCKEASTS 58

Query: 3558 FFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVT 3379
            FF +YGLISHQINSYNDF+++G+Q+VFDS G++ VEP +DPSKK   +WRYA ++FGKVT
Sbjct: 59   FFSEYGLISHQINSYNDFIRNGVQKVFDSFGDLIVEPGYDPSKKRQNEWRYALVRFGKVT 118

Query: 3378 LEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFK 3199
            L+ P+F+ G      D  +E+  L PR+ARLQNMTYSSR+KV  H++VYT+ L RSDKFK
Sbjct: 119  LDLPSFWGG-----ADKDKEY-NLLPRHARLQNMTYSSRMKVNVHIEVYTQKLVRSDKFK 172

Query: 3198 TGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTF 3019
            TG E F+DK +++    DV+ GR+PVMVKSDLCWM  +EK DC FD GGYF+IKGAEKTF
Sbjct: 173  TGKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWMKDAEKGDCYFDHGGYFIIKGAEKTF 232

Query: 3018 IAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVPK-VENIMGADKILTVYFYVTEI 2842
            IAQEQ+C  RLW+T     TVAY+   KR R+ ++L    +E+      +L VYF  TEI
Sbjct: 233  IAQEQICRKRLWITSHQNLTVAYQSEVKRNRLILRLAQSGLEDTTVEKDVLCVYFLSTEI 292

Query: 2841 PIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIED 2662
            P+W+LFFALGVS+D+EVV+LID   +D++I NIL  SI  +D+   GFR++  A+  +E 
Sbjct: 293  PVWILFFALGVSSDKEVVDLIDFPTDDASILNILFPSIQISDEVCAGFRRQKKALGFVEK 352

Query: 2661 LMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRN 2482
             +K  + PP+ES EEC+  +LFPNL    QKA  L YMVKCLL+A+ GRRK +N+DD RN
Sbjct: 353  HIKKTQFPPRESAEECLDMFLFPNLRGMLQKARFLGYMVKCLLQAFTGRRKCNNKDDFRN 412

Query: 2481 KXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFS 2302
            K            L+  + HA +   K++QRDL  D+ L+ IE YLDASI+TNGLSRAFS
Sbjct: 413  KRLDLAGELLERELRAQVSHARKRTAKALQRDLYGDKGLRQIEFYLDASIVTNGLSRAFS 472

Query: 2301 TGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKI 2122
            TGAW HP+KK ER+SGVVA + RTNPLQ   DMRKTRQQV YTG+VGDARYPHPSHWGK+
Sbjct: 473  TGAWCHPFKKTERISGVVANVGRTNPLQTVVDMRKTRQQVQYTGKVGDARYPHPSHWGKV 532

Query: 2121 CFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIF 1942
            CFLSTPDGENCGLVKNLA+ GLVS  I   ESL+    + GME L +D  + L  K+K+F
Sbjct: 533  CFLSTPDGENCGLVKNLAATGLVSINIA--ESLISTLCDSGMENLANDTYTPLHEKHKVF 590

Query: 1941 LDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQ 1762
            L+GDW+G+C DS +FV++LRRKRRR E+P+QVEIK+D+ HGEVRIF D+GRILRPLLVV+
Sbjct: 591  LNGDWIGVCADSLAFVTELRRKRRRNELPHQVEIKRDEQHGEVRIFSDSGRILRPLLVVE 650

Query: 1761 NLKKIKDLK-GDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCE 1585
            NL +IK  K G ++F SLLD G+IE IG EEEEDC+TAWGIK+LF  +    PV YTHCE
Sbjct: 651  NLNRIKPSKEGKYTFHSLLDKGIIELIGAEEEEDCRTAWGIKYLFMED-GGKPVNYTHCE 709

Query: 1584 LDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQR 1405
            LD SFLL +SCG+IPFANHDHARRVLYQ++KHSQQAIG+ TTNP IR+DT SHQL+YPQR
Sbjct: 710  LDMSFLLSVSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPDIRVDTLSHQLHYPQR 769

Query: 1404 PLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLER 1225
            PLF+T+ +DCLGK   +  Q   +P+ E FNGQ AIVAVNVHLGYNQEDS+VMNRASLER
Sbjct: 770  PLFQTMTSDCLGKRGYAPSQNGFIPKFECFNGQNAIVAVNVHLGYNQEDSIVMNRASLER 829

Query: 1224 GMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQT 1045
            GMFR+EH+RSYKA+V+N E+  K++K DD  +F K  SK GRVDSL+DDGFP++GANLQ+
Sbjct: 830  GMFRSEHIRSYKADVDNKESTDKRRKPDDCFNFAKIPSKNGRVDSLDDDGFPFIGANLQS 889

Query: 1044 GDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSS 865
            GDIVIG+ A SG DHSIKLKHTE+GMVQKVVLSSND+GKNFAVVSLRQVR P LGDKFSS
Sbjct: 890  GDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNFAVVSLRQVRQPILGDKFSS 949

Query: 864  MHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ--XXXXXXXXXXXXXXX 691
            MHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTPGQ                 
Sbjct: 950  MHGQKGVLGYLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALAKGIP 1009

Query: 690  LKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSE 511
            L++ATPFSTPSV+ IT QLH+ GFSRWG+ERVY+GRTGE V SLIFMGPTFYQRL HMSE
Sbjct: 1010 LRHATPFSTPSVDAITEQLHKAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMSE 1069

Query: 510  DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQM 331
            DKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGA+ANLHERLFTLSDSSQM
Sbjct: 1070 DKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGASANLHERLFTLSDSSQM 1129

Query: 330  HICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISL 151
            HIC +C+NVAN+IQR+++GGRK+RGPYCR C+S +D+VRVNVPYGAKLLCQELF+MGI+L
Sbjct: 1130 HICHRCHNVANIIQRSLMGGRKVRGPYCRICKSADDIVRVNVPYGAKLLCQELFTMGINL 1189

Query: 150  KFDTELC 130
            KF+T +C
Sbjct: 1190 KFETRIC 1196


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1578 bits (4087), Expect = 0.0
 Identities = 785/1170 (67%), Positives = 932/1170 (79%), Gaps = 8/1170 (0%)
 Frame = -2

Query: 3615 MQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDP 3436
            ++ L E  +K +C+KA+  FF +YGLISHQINS+N F+  G+Q+ F+S G++ V P FDP
Sbjct: 43   LEELGEDIVKYWCKKASMLFFNEYGLISHQINSFNHFIHTGLQKTFESFGDLVVTPGFDP 102

Query: 3435 SKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 3259
            SKKG+ + +RYAS+KFG V L+ P F+ GE      G  +  K+ PR+AR+Q MTY+S++
Sbjct: 103  SKKGENEHFRYASVKFGNVKLDKPMFWGGE------GNAQEFKMLPRHARIQRMTYASKV 156

Query: 3258 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 3079
            K++  +QVY     RSDKFKTG   F+D+ V+ +   ++I GRLPVMVKSDLCWM  +EK
Sbjct: 157  KIQVKVQVYVPKKVRSDKFKTGKAEFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAEK 216

Query: 3078 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLV--P 2905
             D EFD GGYF++KGAEKTFIAQEQ+ L RLWV  +P W +AY+   KR R+ IKLV   
Sbjct: 217  EDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNS 276

Query: 2904 KVENIMGADKILTVYFYVTEIPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2725
            + E +   D  L VYF   E+P+WVLFFALGVS+D+E+V+LI    +D  I NIL AS+ 
Sbjct: 277  RGEEVENGDMSLAVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVR 336

Query: 2724 DADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 2545
            DAD+K   FR+  +AV+++E  +KSV+ PP ES++EC++ Y+FP +S   +KA  LAYMV
Sbjct: 337  DADEKCGAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMV 396

Query: 2544 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 2365
            K LL AY GRRK DNRDD RNK            LK+HI HA + M K++QRDL  DR++
Sbjct: 397  KGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQRDLYGDRDV 456

Query: 2364 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 2185
            +PIEHYLDASIITNGL RAFSTGAWSHPYK+MER+SGVVA + RTNPLQ  A++R+ RQQ
Sbjct: 457  RPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQ 516

Query: 2184 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTI-LQQESLLQRFR 2008
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST +    E +L +  
Sbjct: 517  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKLL 576

Query: 2007 ECGMEKLDDDMSSLLDGKYKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1828
            +CGME+L DD S+ L  K K+ L+GDWVG+C DSSSFV++LR +RRR E+P+QVEIK+D+
Sbjct: 577  DCGMEELVDDTSTHLGNKDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQ 636

Query: 1827 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGDF-SFQSLLDSGVIEFIGPEEEEDCQTA 1651
               EVRI+ DAGRILRPLLVV NL KIK  K D  SFQSLLD GVIE IGPEEEEDC TA
Sbjct: 637  SQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCTA 696

Query: 1650 WGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG 1471
            WG+++LF  E     V+YTHCELD SFLLGLSC L+PFANHDHARRVLYQS+KHS QAIG
Sbjct: 697  WGVEYLFGKE-GKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIG 755

Query: 1470 YSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWML---PRPEFFNGQCA 1300
            +STTNP+IR+DT SHQL+YPQ+PLFRT+ +DCLGK   S  Q  +    P+ EF+NGQ A
Sbjct: 756  FSTTNPNIRVDTLSHQLHYPQKPLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNA 815

Query: 1299 IVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGK 1120
            IVAVNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK+E++N E+  KK+K +D+V+F K
Sbjct: 816  IVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAK 875

Query: 1119 TQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSN 940
             QSKIGRVDSL+DDGFPYVGANLQ+GDI+IGK A SG D+S+KLKHTERG VQKVVLSSN
Sbjct: 876  LQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSN 935

Query: 939  DEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAF 760
            DEGKNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT+QGIVPDIVINPHAF
Sbjct: 936  DEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAF 995

Query: 759  PSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITAQLHRLGFSRWGDERVYDGRT 580
            PSRQTPGQ               L+ ATPFSTPSV+ IT QLHR GFSRWG+ERVY+GRT
Sbjct: 996  PSRQTPGQLLEAALGKGIACGGILRQATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRT 1055

Query: 579  GEKVHSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 400
            GE V SLIFMGPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC
Sbjct: 1056 GEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1115

Query: 399  LIAHGAAANLHERLFTLSDSSQMHICRKCNNVANVIQRAVLGGRKIRGPYCRFCESVEDV 220
            LIAHGA+ANL+ERLFTLSDSSQ+HIC KC NVANVI R V GGRKIRGPYCR CES +D+
Sbjct: 1116 LIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRHCESADDI 1175

Query: 219  VRVNVPYGAKLLCQELFSMGISLKFDTELC 130
            V  +VPYGAKLLCQELFSMGI+LKF+T+LC
Sbjct: 1176 VVAHVPYGAKLLCQELFSMGINLKFETQLC 1205


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1569 bits (4063), Expect = 0.0
 Identities = 769/1019 (75%), Positives = 867/1019 (85%), Gaps = 2/1019 (0%)
 Frame = -2

Query: 3183 FVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQ 3004
            +VDK  +++ + DVI GR+PVM+KSDLCWMN  EK DC+FD GGYF+IKGAEKTFIAQEQ
Sbjct: 2    YVDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQEQ 61

Query: 3003 MCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-KVENIMGADKILTVYFYVTEIPIWVL 2827
            +CL RLWV+ +P+WTVAYR VSKRKRVYIKL P K E+I G +K+L+VYF   E PIW+L
Sbjct: 62   ICLKRLWVSNSPSWTVAYRDVSKRKRVYIKLEPPKREHIRGGEKVLSVYFSAVEFPIWIL 121

Query: 2826 FFALGVSNDREVVNLIDLDIEDSAIANILIASIYDADKKYEGFRKEGNAVKHIEDLMKSV 2647
            FFALG S+D+EVVNLID D EDS I N+LIASIYDAD+  +GFR+  NA+  I   +++ 
Sbjct: 122  FFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIENC 181

Query: 2646 KSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXX 2467
            K PP+ES+E  + NYLFPNLS  RQKA  L YMVKCLL+AY GRRK+DNRDD RNK    
Sbjct: 182  KFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRLEL 241

Query: 2466 XXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWS 2287
                    L++H+KHAER MVK++QRDL  +R +  IEHYLDASIITNGLSRAFSTGAWS
Sbjct: 242  AGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWS 301

Query: 2286 HPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLST 2107
            HPYKKMER+SGVVAT+RRTNPLQ  ADMRKTRQQVSYTG+VGDARYPHPSHWGKICFLST
Sbjct: 302  HPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLST 361

Query: 2106 PDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKYKIFLDGDW 1927
            PDGENCGLVKNLA  GLVST I  +E  L +  + GMEKL DD S+LL GK K+FLDG+W
Sbjct: 362  PDGENCGLVKNLAITGLVSTNI--EEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNW 419

Query: 1926 VGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKI 1747
            VG+C DS SFV+ LRRKRRR EVP+QVEIK+D+ H EVR+F DAGRILRPLLVV+NL KI
Sbjct: 420  VGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKI 479

Query: 1746 KDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSF 1570
            K  KG D+SFQSLLD GVIEFIG EEEEDC+TAWGI +LF        V+YTHCELD SF
Sbjct: 480  KASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSF 539

Query: 1569 LLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRT 1390
            LLGLS  +IPFANHDHARRVLYQSEKHSQQA+G++TTNP+IR+DTN+HQLYYPQRPLFRT
Sbjct: 540  LLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRT 599

Query: 1389 ILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRT 1210
            +++DCLGK         ++PR E+FNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+
Sbjct: 600  MVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 659

Query: 1209 EHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVI 1030
            EH+RSYKA+V+N E+ GKK K +D V+FGK QSKIGRVDSL+DDGFP++GANLQ GDIV+
Sbjct: 660  EHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVV 719

Query: 1029 GKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQK 850
            G+ A SG DHSIKLKHTERGMVQKVVLS+NDEGKNFAVVSLRQVR+PCLGDKFSSMHGQK
Sbjct: 720  GRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQK 779

Query: 849  GVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPF 670
            GVLGFLESQENFPFT QGIVPDIV+NPHAFPSRQTPGQ                KYATPF
Sbjct: 780  GVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIACGGLQKYATPF 839

Query: 669  STPSVEDITAQLHRLGFSRWGDERVYDGRTGEKVHSLIFMGPTFYQRLTHMSEDKVKFRN 490
            ST SV+ +T QLHR GFSRWG ERVY+GRTGE +HSL+FMGPTFYQRLTHMSEDKVKFRN
Sbjct: 840  STLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSEDKVKFRN 899

Query: 489  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCN 310
            TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCN
Sbjct: 900  TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICRKCN 959

Query: 309  NVANVIQRAVLGGRKIRGPYCRFCESVEDVVRVNVPYGAKLLCQELFSMGISLKFDTEL 133
            N+ANVIQRAV GGRKIRGPYCRFCESVE++VRVNVPYGAKLL QELFSMGI++KFDTEL
Sbjct: 960  NIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGAKLLAQELFSMGITMKFDTEL 1018