BLASTX nr result
ID: Rauwolfia21_contig00053377
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00053377
(406 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t... 154 9e-36
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi... 154 9e-36
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 153 2e-35
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 153 2e-35
emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera] 151 1e-34
emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera] 150 1e-34
emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera] 150 1e-34
dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis t... 150 2e-34
gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arab... 148 6e-34
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 147 2e-33
emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera] 147 2e-33
emb|CAN74847.1| hypothetical protein VITISV_028741 [Vitis vinifera] 147 2e-33
emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera] 146 3e-33
emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera] 146 3e-33
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 146 3e-33
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 145 5e-33
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 145 7e-33
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 145 7e-33
dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis t... 144 2e-32
gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidop... 138 7e-31
>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1491
Score = 154 bits (390), Expect = 9e-36
Identities = 74/134 (55%), Positives = 92/134 (68%), Gaps = 1/134 (0%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKT-PCDICLRAKQTRNPFIISENKADKVFALIHCV 226
H+RLGHPS ++ LP + SS + + CD+C RAKQTR F S NK+ F+LIHC
Sbjct: 514 HQRLGHPSFSVLSSLPLFSGSSCSVSSRSCDVCFRAKQTREVFPDSSNKSTDCFSLIHCD 573
Query: 225 MWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCV 46
+WG Y SSCGA YFLTIVDDFSR+VW YL K +VR L NF A QFGKS++ +
Sbjct: 574 VWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKII 633
Query: 45 RTDNGTEFLCLKSF 4
R+DNGTEF+CL S+
Sbjct: 634 RSDNGTEFMCLSSY 647
>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1413
Score = 154 bits (390), Expect = 9e-36
Identities = 74/134 (55%), Positives = 92/134 (68%), Gaps = 1/134 (0%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKT-PCDICLRAKQTRNPFIISENKADKVFALIHCV 226
H+RLGHPS ++ LP + SS + + CD+C RAKQTR F S NK+ F+LIHC
Sbjct: 514 HQRLGHPSFSVLSSLPLFSGSSCSVSSRSCDVCFRAKQTREVFPDSSNKSTDCFSLIHCD 573
Query: 225 MWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCV 46
+WG Y SSCGA YFLTIVDDFSR+VW YL K +VR L NF A QFGKS++ +
Sbjct: 574 VWGPYRVPSSCGAVYFLTIVDDFSRSVWTYLLLAKSEVRSVLTNFLAYTEKQFGKSVKII 633
Query: 45 RTDNGTEFLCLKSF 4
R+DNGTEF+CL S+
Sbjct: 634 RSDNGTEFMCLSSY 647
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1156
Score = 153 bits (387), Expect = 2e-35
Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKT-PCDICLRAKQTRNPFIISENKADKVFALIHCV 226
H+RLGHPS ++ LP SS+ + + CD+C RAKQTR F +S NK+ + F+LIHC
Sbjct: 92 HQRLGHPSFSVLSSLPVLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNKSIECFSLIHCD 151
Query: 225 MWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCV 46
+WG Y SSCGA YFLTIVDDFSRAVW YL K +VR L NF QFGKS++ +
Sbjct: 152 VWGPYRVPSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRTVLTNFLVYTEKQFGKSVKVL 211
Query: 45 RTDNGTEFLCLKSF 4
R+DNGTEF+CL S+
Sbjct: 212 RSDNGTEFMCLASY 225
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 153 bits (387), Expect = 2e-35
Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNW-QVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALIHCV 226
H+RLGHPS ++ LP + + SS CD+C RAKQTR F S NK ++ F+LIHC
Sbjct: 531 HQRLGHPSFSVLSSLPLFSKTSSTVTSHSCDVCFRAKQTREVFPESINKTEECFSLIHCD 590
Query: 225 MWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCV 46
+WG Y +SCGA YFLTIVDD+SRAVW YL EK +VRQ L NF QFGK+++ V
Sbjct: 591 VWGPYRVPASCGAVYFLTIVDDYSRAVWTYLLLEKSEVRQVLTNFLKYAEKQFGKTVKMV 650
Query: 45 RTDNGTEFLCLKSF 4
R+DNGTEF+CL S+
Sbjct: 651 RSDNGTEFMCLSSY 664
>emb|CAN76645.1| hypothetical protein VITISV_004685 [Vitis vinifera]
Length = 1196
Score = 151 bits (381), Expect = 1e-34
Identities = 69/133 (51%), Positives = 92/133 (69%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALIHCVM 223
HKR+GHPS+ + + LP + C+IC RAK R+ F +S+NKA ++F IHC +
Sbjct: 397 HKRMGHPSEKVVKLLPPVSNLKGSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHCDL 456
Query: 222 WGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCVR 43
WGSY SSCGA YFLTIVDDFSRAVWIYL +K +V Q ++F AMV+ QF + ++ V+
Sbjct: 457 WGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVFQMFMSFIAMVDQQFSQIVKVVQ 516
Query: 42 TDNGTEFLCLKSF 4
+DNGTEF CL +
Sbjct: 517 SDNGTEFKCLLDY 529
>emb|CAN83015.1| hypothetical protein VITISV_041694 [Vitis vinifera]
Length = 1099
Score = 150 bits (380), Expect = 1e-34
Identities = 68/133 (51%), Positives = 93/133 (69%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALIHCVM 223
HKR+GHPS+ + + LP + C+IC RAK R+ F +S+NKA ++F IHC +
Sbjct: 184 HKRMGHPSEKVVKLLPPVSNLKGSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHCDL 243
Query: 222 WGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCVR 43
WGSY SSCGA YFLTIVDDFSRAVWIYL +K +V + ++F AMV+ QF ++++ V+
Sbjct: 244 WGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVFRMFMSFIAMVDRQFSQTVKVVQ 303
Query: 42 TDNGTEFLCLKSF 4
+DNGTEF CL +
Sbjct: 304 SDNGTEFKCLLDY 316
>emb|CAN73272.1| hypothetical protein VITISV_013115 [Vitis vinifera]
Length = 1178
Score = 150 bits (380), Expect = 1e-34
Identities = 68/133 (51%), Positives = 93/133 (69%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALIHCVM 223
HKR+GHPS+ + + LP + C+IC RAK R+ F +S+NKA ++F IHC +
Sbjct: 270 HKRMGHPSEKVVKLLPPVSNLKGSLNKACEICFRAKHXRDKFPLSDNKATRIFEKIHCDL 329
Query: 222 WGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCVR 43
WGSY SSCGA YFLTIVDDFSRAVWIYL +K +V + ++F AMV+ QF ++++ V+
Sbjct: 330 WGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVFRMFMSFIAMVDRQFSQTVKVVQ 389
Query: 42 TDNGTEFLCLKSF 4
+DNGTEF CL +
Sbjct: 390 SDNGTEFKCLLDY 402
>dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1098
Score = 150 bits (379), Expect = 2e-34
Identities = 75/135 (55%), Positives = 90/135 (66%), Gaps = 2/135 (1%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKT--PCDICLRAKQTRNPFIISENKADKVFALIHC 229
H RLGHPS + P + SS ++ CDIC RAKQ R F S NK F LIHC
Sbjct: 506 HHRLGHPSTGVLLSFPEFASSSSDLEIIKSCDICYRAKQAREVFSPSLNKTTVCFELIHC 565
Query: 228 VMWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQC 49
+WG Y T +SCG+ YFLTIVDDFSR+VW +L AEK +V + + NFCAM QF KSI+
Sbjct: 566 DVWGPYRTPASCGSVYFLTIVDDFSRSVWTFLMAEKSEVSRLIRNFCAMSERQFCKSIKT 625
Query: 48 VRTDNGTEFLCLKSF 4
V +DNGTEF+CLKSF
Sbjct: 626 VHSDNGTEFMCLKSF 640
>gb|AAG09097.1|AC009323_8 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1486
Score = 148 bits (374), Expect = 6e-34
Identities = 67/134 (50%), Positives = 92/134 (68%), Gaps = 1/134 (0%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKTP-CDICLRAKQTRNPFIISENKADKVFALIHCV 226
H+RLGHPS LP V+S + C+IC++AKQTR+PF +S NK F L+HC
Sbjct: 508 HQRLGHPSSKALHLLPFSDVTSSTFDSKTCEICIQAKQTRDPFPLSSNKTSFAFELVHCD 567
Query: 225 MWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCV 46
+WG Y T+S CG+ YFLT+VDD+SRAVW+YL K + +HL NF A+V Q+ +I+ +
Sbjct: 568 LWGPYRTTSICGSRYFLTLVDDYSRAVWLYLLPSKQEAPKHLKNFIALVERQYTTNIKMI 627
Query: 45 RTDNGTEFLCLKSF 4
R+DNG+EF+CL F
Sbjct: 628 RSDNGSEFICLSDF 641
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 147 bits (370), Expect = 2e-33
Identities = 69/135 (51%), Positives = 93/135 (68%), Gaps = 2/135 (1%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVG--IKTPCDICLRAKQTRNPFIISENKADKVFALIHC 229
H+RLGH SD I LP +SS ++ CD C+RAKQTR+ F +S+N++ F LIHC
Sbjct: 293 HRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQLIHC 352
Query: 228 VMWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQC 49
+WG Y T S GA YFLTIVDD+SR VW+YL +K + ++HL +F A+V QF I+
Sbjct: 353 DVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEIKT 412
Query: 48 VRTDNGTEFLCLKSF 4
VR+DNGTEFLC++ +
Sbjct: 413 VRSDNGTEFLCMREY 427
>emb|CAN69804.1| hypothetical protein VITISV_017631 [Vitis vinifera]
Length = 1191
Score = 147 bits (370), Expect = 2e-33
Identities = 67/133 (50%), Positives = 91/133 (68%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALIHCVM 223
HKR+ HPS+ + + LP + C+IC RAK R+ F +S+NKA ++F IHC +
Sbjct: 229 HKRMRHPSEKVVKLLPPVSNLKGSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHCDL 288
Query: 222 WGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCVR 43
WGSY SSCGA YFLTIVDDFSRAVWIYL +K V + ++F AMV+ QF ++++ V+
Sbjct: 289 WGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTDVFRMFMSFIAMVDRQFSQTVKVVQ 348
Query: 42 TDNGTEFLCLKSF 4
+DNGTEF CL +
Sbjct: 349 SDNGTEFKCLLDY 361
>emb|CAN74847.1| hypothetical protein VITISV_028741 [Vitis vinifera]
Length = 1262
Score = 147 bits (370), Expect = 2e-33
Identities = 67/133 (50%), Positives = 92/133 (69%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALIHCVM 223
HKR+GHPS+ + + LP + C+IC RAK R+ F +S+NKA ++F IHC +
Sbjct: 516 HKRMGHPSEKVVKLLPPVSNLKGSLNKACEICFRAKHPRDKFSLSDNKATRIFEKIHCDL 575
Query: 222 WGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCVR 43
WGSY SSCGA YFLTIVDDFSRAVWIYL +K +V + ++F AMV+ QF ++++ V+
Sbjct: 576 WGSYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVFRMFMSFIAMVDRQFSQTVKVVQ 635
Query: 42 TDNGTEFLCLKSF 4
+DNGTEF L +
Sbjct: 636 SDNGTEFKWLLDY 648
>emb|CAN80919.1| hypothetical protein VITISV_002640 [Vitis vinifera]
Length = 1450
Score = 146 bits (368), Expect = 3e-33
Identities = 65/133 (48%), Positives = 91/133 (68%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALIHCVM 223
HKR+GHPS+ + + LP + C+IC RAK R+ F +++NKA ++F IHC +
Sbjct: 517 HKRMGHPSEKVVKLLPPVSNLKGSLNKACEICFRAKHPRDKFPLTDNKATRIFEKIHCDL 576
Query: 222 WGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCVR 43
WGSY SSC A YFLTI+DDFSRAVWIYL K +V + ++F AMV+ QF ++++ V+
Sbjct: 577 WGSYKHVSSCAARYFLTIIDDFSRAVWIYLLVNKTEVFRMFMSFIAMVDRQFSQTVKVVQ 636
Query: 42 TDNGTEFLCLKSF 4
+DNGTEF CL +
Sbjct: 637 SDNGTEFKCLLDY 649
>emb|CAN82171.1| hypothetical protein VITISV_040546 [Vitis vinifera]
Length = 1129
Score = 146 bits (368), Expect = 3e-33
Identities = 66/133 (49%), Positives = 91/133 (68%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALIHCVM 223
H R+GHPS+ + + LP + C+IC RAK R+ F +S+NKA ++F IHC +
Sbjct: 265 HNRMGHPSEKVVKLLPLVSNIKGSLNKACEICFRAKHPRDKFPLSDNKATRIFEKIHCDL 324
Query: 222 WGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCVR 43
W SY SSCGA YFLTIVDDFSRAVWIYL +K +V + ++F AMV+ QF ++++ V+
Sbjct: 325 WASYKHVSSCGARYFLTIVDDFSRAVWIYLLVDKTEVFRMFMSFIAMVDRQFSQTVKVVQ 384
Query: 42 TDNGTEFLCLKSF 4
+DNGTEF CL +
Sbjct: 385 SDNGTEFKCLLDY 397
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 146 bits (368), Expect = 3e-33
Identities = 71/135 (52%), Positives = 89/135 (65%), Gaps = 2/135 (1%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKT--PCDICLRAKQTRNPFIISENKADKVFALIHC 229
H+RLGHPS ++ LP SS G CD C R+KQTR F IS NK + F+LIH
Sbjct: 503 HRRLGHPSTSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTREVFPISNNKTMECFSLIHG 562
Query: 228 VMWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQC 49
+WG Y T S+ GA YFLT+VDD+SR+VW YL + K +V Q + NFCAM QFGK ++
Sbjct: 563 DVWGPYRTPSTTGAVYFLTLVDDYSRSVWTYLMSSKTEVSQLIKNFCAMSERQFGKQVKA 622
Query: 48 VRTDNGTEFLCLKSF 4
RTDNGTEF+CL +
Sbjct: 623 FRTDNGTEFMCLTPY 637
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 145 bits (366), Expect = 5e-33
Identities = 69/135 (51%), Positives = 89/135 (65%), Gaps = 2/135 (1%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLP--NWQVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALIHC 229
H R+GHP+ + +P + VSS + CD+C RAKQTRN F +S NK ++F LI+C
Sbjct: 393 HSRMGHPAARVVSLIPESSVSVSSTHLNKACDVCHRAKQTRNSFPLSINKTLRIFELIYC 452
Query: 228 VMWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQC 49
+WG Y T S GA YFLTI+DD+SR VW+YL +K + HL NF AM + QF I+
Sbjct: 453 DLWGPYRTPSHTGARYFLTIIDDYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQFNVKIKT 512
Query: 48 VRTDNGTEFLCLKSF 4
VR+DNGTEFLCL F
Sbjct: 513 VRSDNGTEFLCLTKF 527
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 145 bits (365), Expect = 7e-33
Identities = 68/135 (50%), Positives = 92/135 (68%), Gaps = 2/135 (1%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVG--IKTPCDICLRAKQTRNPFIISENKADKVFALIHC 229
H+RLGH SD I LP +SS ++ CD C+RAKQTR+ F + +N++ F LIHC
Sbjct: 293 HRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLRDNRSMDSFQLIHC 352
Query: 228 VMWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQC 49
+WG Y T S GA YFLTIVDD+SR VW+YL +K + ++HL +F A+V QF I+
Sbjct: 353 DVWGPYRTPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFMALVERQFDTEIKT 412
Query: 48 VRTDNGTEFLCLKSF 4
VR+DNGTEFLC++ +
Sbjct: 413 VRSDNGTEFLCMREY 427
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 145 bits (365), Expect = 7e-33
Identities = 68/135 (50%), Positives = 92/135 (68%), Gaps = 2/135 (1%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVG--IKTPCDICLRAKQTRNPFIISENKADKVFALIHC 229
H+RLGH SD I LP +SS ++ CD C+RAKQTR+ F +S+N++ F LIHC
Sbjct: 517 HRRLGHASDKIVNLLPRELLSSGKEILENVCDTCMRAKQTRDTFPLSDNRSMDSFQLIHC 576
Query: 228 VMWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQC 49
+WG Y S GA YFLTIVDD+SR VW+YL +K + ++HL +F A+V QF I+
Sbjct: 577 DVWGPYRAPSYSGARYFLTIVDDYSRGVWVYLMTDKSETQKHLKDFIALVERQFDTEIKI 636
Query: 48 VRTDNGTEFLCLKSF 4
VR+DNGTEFLC++ +
Sbjct: 637 VRSDNGTEFLCMREY 651
>dbj|BAB10837.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1462
Score = 144 bits (362), Expect = 2e-32
Identities = 64/134 (47%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Frame = -2
Query: 402 HKRLGHPSDNIFRYLPNWQVSSVGIKTP-CDICLRAKQTRNPFIISENKADKVFALIHCV 226
H RLGHPS + + L + + C+IC++AKQTR+PF +S NK F ++HC
Sbjct: 472 HCRLGHPSSKVLKLLSFSDSTGHAFDSKTCEICIKAKQTRDPFPLSNNKTSSPFEMVHCD 531
Query: 225 MWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSIQCV 46
+WG Y T+S CG+NYFLT+VD+++RAVW+YL K HL NF ++V QF I+ +
Sbjct: 532 LWGPYRTTSICGSNYFLTLVDNYTRAVWLYLLPSKQTAPMHLKNFISLVERQFSTKIKTI 591
Query: 45 RTDNGTEFLCLKSF 4
R+DNGTEF+CL SF
Sbjct: 592 RSDNGTEFVCLSSF 605
>gb|AAG51258.1|AC025782_3 Ty1/copia-element polyprotein [Arabidopsis thaliana]
Length = 1152
Score = 138 bits (348), Expect = 7e-31
Identities = 70/137 (51%), Positives = 91/137 (66%), Gaps = 4/137 (2%)
Frame = -2
Query: 402 HKRLGHPSDNIFRY----LPNWQVSSVGIKTPCDICLRAKQTRNPFIISENKADKVFALI 235
H RLGHPS + L ++ S +KT CD+C+RAKQTR F S NKA++ F+ I
Sbjct: 515 HMRLGHPSSKVLSSVLPSLEDFDSCSSDLKTICDVCVRAKQTRASFSESFNKAEECFSFI 574
Query: 234 HCVMWGSYHTSSSCGANYFLTIVDDFSRAVWIYLFAEKCKVRQHLLNFCAMVNTQFGKSI 55
H +WG Y +SSCGA+YFLTIVDD SRAVWI+L K +V L F AM + QF K +
Sbjct: 575 HYDVWGPYKHASSCGAHYFLTIVDDHSRAVWIHLMLAKSEVASLLQQFIAMASRQFNKQV 634
Query: 54 QCVRTDNGTEFLCLKSF 4
+ VR++NGTEF+ LKS+
Sbjct: 635 KTVRSNNGTEFMSLKSY 651