BLASTX nr result
ID: Rauwolfia21_contig00053115
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00053115
(544 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 129 3e-28
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 125 5e-27
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 125 6e-27
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 124 1e-26
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera] 123 3e-26
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 123 3e-26
emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera] 122 4e-26
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 122 4e-26
emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera] 122 5e-26
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 122 7e-26
gb|AAB82754.1| retrofit [Oryza longistaminata] 121 9e-26
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera] 121 9e-26
emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera] 121 1e-25
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 121 1e-25
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 121 1e-25
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol... 120 2e-25
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 120 2e-25
emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera] 120 2e-25
emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera] 120 2e-25
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera] 120 2e-25
>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
Length = 1384
Score = 129 bits (325), Expect = 3e-28
Identities = 57/104 (54%), Positives = 77/104 (74%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
WVDSF+TAV++INRLP L + SP E+L ++P Y L+ F C CFP+L YNS KLQ
Sbjct: 585 WVDSFNTAVYIINRLPSRVLNYASPYEQLFHRVPQYHSLKVFGCACFPYLRPYNSSKLQL 644
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFEQ 316
+S +C+FLGY L+++GY C D +S +VY+SRHV FDE+ FPF +
Sbjct: 645 RSKRCVFLGYSLNHQGYRCFDPSSGRVYLSRHVLFDESSFPFTE 688
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 125 bits (315), Expect = 5e-27
Identities = 71/173 (41%), Positives = 95/173 (54%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W +F TA FLINR+P + L+ SP L + PDY FLR F CLC+P + YN+HKLQY
Sbjct: 618 WSYAFQTATFLINRMPSKVLQNASPYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQY 677
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFEQCDVXXXXXXXXXXXXX 364
+S KC+FLGY L +KGY C+D + +VY+S HV FDE FPF Q ++
Sbjct: 678 RSLKCVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFPFAQ-NISSSPSKDASDESV 736
Query: 365 XXXXVLDIPLCSLSAHVPPTDAASPVTGVSSPVLHLLLPTSVALLQYTPVSRS 523
++ +LS H ASP ++S + H PT TP +RS
Sbjct: 737 IPAIIVSSNPSTLSFHGSNHSMASP--NLTSALTHPTPPTD------TPTTRS 781
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 125 bits (314), Expect = 6e-27
Identities = 54/102 (52%), Positives = 78/102 (76%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W ++F A +LINRLP + +KF +PLERL + PDY LRTF C C+P+L YN+HKLQ+
Sbjct: 628 WDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDYKSLRTFGCACWPNLRPYNTHKLQF 687
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPF 310
+S +C+FLG+ +KG+ C+D+++ +VY+SR VTFDE +FPF
Sbjct: 688 RSKQCVFLGFSNIHKGFKCLDVSTGRVYVSRDVTFDEQVFPF 729
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 124 bits (311), Expect = 1e-26
Identities = 57/104 (54%), Positives = 71/104 (68%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W +F TA FLINR+P + L SP L + PDY FLR F CLC+P + YN+HKLQY
Sbjct: 668 WSYAFQTATFLINRMPSKVLXNASPYFALFKRNPDYKFLRVFGCLCYPFIRPYNNHKLQY 727
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFEQ 316
+S KC+FLGY L +KGY C+D + +VY+S HV FDE FPF Q
Sbjct: 728 RSLKCVFLGYSLHHKGYLCLDNLTGRVYVSPHVVFDETQFPFAQ 771
>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
Length = 1271
Score = 123 bits (308), Expect = 3e-26
Identities = 56/156 (35%), Positives = 91/156 (58%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W+ +F T +FLINRLP + L + SP + L GK P+Y + F CLC+P++ YN +KL Y
Sbjct: 513 WLYAFHTTIFLINRLPTKVLNYQSPFQILFGKSPNYHIFKIFGCLCYPYIRPYNKNKLSY 572
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFEQCDVXXXXXXXXXXXXX 364
+S++C+FLGY ++KGY C++ + ++Y++RHV F E +FPF+
Sbjct: 573 RSSQCVFLGYSSNHKGYMCLNPLTGRLYVTRHVVFHETVFPFQ--STPDQSSSVVTIPTP 630
Query: 365 XXXXVLDIPLCSLSAHVPPTDAASPVTGVSSPVLHL 472
P+ SL +H P+ ++ P+T + S + L
Sbjct: 631 AFLPCSSPPVSSLRSHTTPSTSSPPLTNMPSSTISL 666
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 123 bits (308), Expect = 3e-26
Identities = 54/102 (52%), Positives = 73/102 (71%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W ++F AV+LINR P + L+F++PLE L + PDY LR F C C+PHL YN+HKLQ+
Sbjct: 641 WDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVFGCACWPHLRPYNTHKLQF 700
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPF 310
+S +C FLGY +KG+ C+D ++ +VYISR V FDE FPF
Sbjct: 701 RSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPF 742
>emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera]
Length = 1539
Score = 122 bits (307), Expect = 4e-26
Identities = 56/103 (54%), Positives = 76/103 (73%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W +F T+V+LIN LP + L F SPL+ L K+P+Y LR F+CLCFP L YN HKL Y
Sbjct: 832 WSFAFQTSVYLINLLPAKLLNFQSPLQVLFHKIPNYHHLRVFACLCFPSLRPYNHHKLSY 891
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFE 313
+ST C+FLGY ++KGY C+D+++S++YISR V F E+ FPF+
Sbjct: 892 RSTACVFLGYASAHKGYICLDVSTSRLYISRDVLFHESSFPFQ 934
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 122 bits (307), Expect = 4e-26
Identities = 57/102 (55%), Positives = 71/102 (69%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W ++F +AV+LINR P L VSPLERL G PDY LR F C C+P+L YN HKLQ+
Sbjct: 639 WGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYNALRVFGCACWPNLRPYNKHKLQF 698
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPF 310
+ST C FLGY +KG+ C+D ++ +VYISR V FDE FPF
Sbjct: 699 RSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDETQFPF 740
>emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]
Length = 1270
Score = 122 bits (306), Expect = 5e-26
Identities = 56/103 (54%), Positives = 75/103 (72%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W +F T+V+LIN LP + L F SPL+ L K+P+Y LR F CLCFP L YN HKL Y
Sbjct: 556 WSFAFQTSVYLINLLPTKLLNFQSPLQVLFHKIPNYHHLRVFGCLCFPSLRPYNHHKLSY 615
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFE 313
+ST C+FLGY ++KGY C+D+++S++YISR V F E+ FPF+
Sbjct: 616 RSTACVFLGYASAHKGYICLDVSTSRLYISRDVLFHESSFPFQ 658
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 122 bits (305), Expect = 7e-26
Identities = 52/102 (50%), Positives = 73/102 (71%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W +F AV+LINR P + + +PL +LTG PDY LR F C C+P+L YN HKLQ+
Sbjct: 641 WDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCACWPNLRPYNQHKLQF 700
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPF 310
+ST+C+FLGY +KG+ C+D+++ ++YISR V FDE +FPF
Sbjct: 701 RSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPF 742
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 121 bits (304), Expect = 9e-26
Identities = 51/102 (50%), Positives = 75/102 (73%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W ++F A +LINR+P + ++ +PLE+L + PDY LR F C C+PHL YN+HKLQ+
Sbjct: 641 WDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVFGCACWPHLRPYNTHKLQF 700
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPF 310
+S +C+FLG+ +KG+ C+D++S +VYISR V FDE +FPF
Sbjct: 701 RSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDENVFPF 742
>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
Length = 1449
Score = 121 bits (304), Expect = 9e-26
Identities = 56/156 (35%), Positives = 91/156 (58%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W+ +F TA+FLINRLP + L + SP + L GK P+Y + F CLC+P++ YN +KL Y
Sbjct: 704 WLYAFHTAIFLINRLPTKVLNYQSPFQILFGKSPNYHIFKIFGCLCYPYIRPYNKNKLSY 763
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFEQCDVXXXXXXXXXXXXX 364
+S++C+FLGY ++KGY C++ + ++Y++RHV F E +FPF+
Sbjct: 764 RSSQCVFLGYSSNHKGYMCLNPLTGRLYVTRHVVFHETVFPFQ--STPDQSSSVVTIPTP 821
Query: 365 XXXXVLDIPLCSLSAHVPPTDAASPVTGVSSPVLHL 472
P+ SL +H + ++ P+T + S + L
Sbjct: 822 AFLPCSSPPVSSLRSHTTXSTSSPPLTNMPSSTISL 857
>emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera]
Length = 828
Score = 121 bits (303), Expect = 1e-25
Identities = 55/103 (53%), Positives = 74/103 (71%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W +F TAV+LIN LP + L F SP++ L KLP+Y LR F CLCFP L Y HKL Y
Sbjct: 567 WTYAFQTAVYLINLLPAKLLHFQSPIQALFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCY 626
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFE 313
+ST C+FLGY ++ GY C+D+++S++YISR+V F E+ FPF+
Sbjct: 627 RSTACVFLGYAPAHNGYLCLDVSTSRIYISRNVIFHESYFPFQ 669
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 121 bits (303), Expect = 1e-25
Identities = 53/104 (50%), Positives = 76/104 (73%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W ++F TA +LINR P + +++ +PLERL + P+Y LRTF C C+P+L YN+ KLQ+
Sbjct: 556 WDEAFLTATYLINRTPSKVIQYSTPLERLLNQKPNYSSLRTFGCACWPNLRPYNNRKLQF 615
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFEQ 316
+S +C+FLGY +KG+ C+D+ + +VYISR V FDE IFPF Q
Sbjct: 616 RSKQCVFLGYSNIHKGFKCLDVATGRVYISRDVVFDENIFPFSQ 659
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 121 bits (303), Expect = 1e-25
Identities = 53/102 (51%), Positives = 73/102 (71%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W ++F++AV+LINR P LK+ +PLERL + PDY LR F C C+PHL YN+ KLQ+
Sbjct: 439 WDEAFTSAVYLINRTPSRLLKYATPLERLFKQTPDYNLLRVFGCACWPHLRPYNARKLQF 498
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPF 310
+S +C FLGY +KG+ C+D ++ +VYIS V FDE +FPF
Sbjct: 499 RSKQCTFLGYSPLHKGFKCLDPSTGRVYISHDVIFDENVFPF 540
>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 969
Score = 120 bits (301), Expect = 2e-25
Identities = 53/102 (51%), Positives = 73/102 (71%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W ++F A +LINR P + L +P ERL K PDY LR F C+C+P+L YNSHKLQ+
Sbjct: 488 WDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQF 547
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPF 310
+S +C+FLGY +KG+ C+D+++ +VY+SR VTFDE FPF
Sbjct: 548 RSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPF 589
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
mays]
Length = 1313
Score = 120 bits (301), Expect = 2e-25
Identities = 53/102 (51%), Positives = 73/102 (71%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W ++F A +LINR P + L +P ERL K PDY LR F C+C+P+L YNSHKLQ+
Sbjct: 488 WDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYSVLRIFGCVCWPNLRPYNSHKLQF 547
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPF 310
+S +C+FLGY +KG+ C+D+++ +VY+SR VTFDE FPF
Sbjct: 548 RSKQCVFLGYSSLHKGFKCLDVSTGRVYVSRDVTFDENFFPF 589
>emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]
Length = 1334
Score = 120 bits (301), Expect = 2e-25
Identities = 55/103 (53%), Positives = 74/103 (71%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W +F TAV+LIN LP + L F SP + L KLP+Y LR F CLCFP L Y HKL Y
Sbjct: 664 WTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCY 723
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFE 313
+ST C+FLGY ++KGY C+D++++++YISR+V F E+ FPF+
Sbjct: 724 RSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPFQ 766
>emb|CAN78451.1| hypothetical protein VITISV_005945 [Vitis vinifera]
Length = 773
Score = 120 bits (301), Expect = 2e-25
Identities = 55/103 (53%), Positives = 74/103 (71%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W +F TAV+LIN LP + L F SP + L KLP+Y LR F CLCFP L Y HKL Y
Sbjct: 11 WTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCY 70
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFE 313
+ST C+FLGY ++KGY C+D++++++YISR+V F E+ FPF+
Sbjct: 71 RSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPFQ 113
>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
Length = 1434
Score = 120 bits (301), Expect = 2e-25
Identities = 55/103 (53%), Positives = 74/103 (71%)
Frame = +2
Query: 5 WVDSFSTAVFLINRLPMEQLKFVSPLERLTGKLPDYGFLRTFSCLCFPHLVLYNSHKLQY 184
W +F TAV+LIN LP + L F SP + L KLP+Y LR F CLCFP L Y HKL Y
Sbjct: 664 WTYAFQTAVYLINLLPAKLLHFQSPTQTLFHKLPNYHHLRVFGCLCFPSLRPYTQHKLCY 723
Query: 185 KSTKCLFLGYDLSYKGY*CMDLTSSKVYISRHVTFDEAIFPFE 313
+ST C+FLGY ++KGY C+D++++++YISR+V F E+ FPF+
Sbjct: 724 RSTACVFLGYAPAHKGYLCLDVSTNRIYISRNVIFHESSFPFQ 766