BLASTX nr result
ID: Rauwolfia21_contig00051226
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00051226
(391 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008963365.1| hypothetical chloroplast RF19 [Camellia olei... 57 2e-14
ref|YP_008593172.1| hypothetical chloroplast RF1 (chloroplast) [... 57 2e-14
ref|YP_008592994.1| hypothetical chloroplast RF1 (chloroplast) [... 57 2e-14
ref|YP_008593083.1| hypothetical chloroplast RF1 (chloroplast) [... 57 2e-14
ref|YP_008592904.1| hypothetical chloroplast RF1 (chloroplast) [... 57 2e-14
ref|YP_008520200.1| hypothetical chloroplast RF1 (chloroplast) [... 57 2e-14
gb|AGU44477.1| hypothetical chloroplast RF1 (chloroplast) [Camel... 57 2e-14
ref|YP_008592818.1| hypothetical chloroplast RF1 (chloroplast) [... 57 2e-14
gb|AFK81358.1| hypothetical chloroplast RF19 [Camellia sinensis ... 52 7e-13
gb|AEC11065.1| photosystem I assembly protein ycf1 protein, part... 55 8e-13
ref|YP_007317307.1| Ycf1 (chloroplast) [Camellia sinensis] gi|43... 52 4e-12
gb|ADD30910.1| putative RF1 protein [Nerium oleander] 55 8e-12
gb|ADD30903.1| putative RF1 protein [Aucuba japonica] 48 3e-11
gb|AGW98845.1| hypothetical chloroplast RF19 (chloroplast) [Oper... 52 2e-10
gb|AGW98859.1| hypothetical chloroplast RF19 (chloroplast) [Oper... 52 2e-10
gb|ADD30912.1| putative RF1 protein [Ximenia americana] 49 3e-10
ref|YP_002720024.1| Ycf1 [Nicotiana tabacum] 45 8e-10
ref|YP_358745.1| hypothetical protein NisyCp102 [Nicotiana sylve... 45 8e-10
ref|YP_538908.1| hypothetical chloroplast RF1 [Solanum bulbocast... 46 8e-10
ref|YP_635697.1| hypothetical chloroplast RF1 [Solanum tuberosum... 46 8e-10
>ref|YP_008963365.1| hypothetical chloroplast RF19 [Camellia oleifera]
gi|388893354|gb|AFK81445.1| hypothetical chloroplast RF19
[Camellia oleifera]
Length = 1875
Score = 56.6 bits (135), Expect(2) = 2e-14
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+LWFFP++V LYN KIKP
Sbjct: 1461 KDLFYLTIPQDQEINSPNQKKIFFDWMGMNEEILSRPISNLKLWFFPEFVLLYNAYKIKP 1520
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1521 WFIPSKLLFFNINENGSENKNINRKQ 1546
Score = 47.4 bits (111), Expect(2) = 2e-14
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK GTNNY+IID IDK+ F L
Sbjct: 1432 EAWIKIDTNKNKNTKTGTNNYQIIDKIDKKDLFYL 1466
>ref|YP_008593172.1| hypothetical chloroplast RF1 (chloroplast) [Camellia yunnanensis]
gi|537362852|gb|AGU44655.1| hypothetical chloroplast RF1
(chloroplast) [Camellia yunnanensis]
Length = 1873
Score = 56.6 bits (135), Expect(2) = 2e-14
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+LWFFP++V LYN KIKP
Sbjct: 1461 KDLFYLTIPQDQEINSPNQKKIFFDWMGMNEEILSRPISNLKLWFFPEFVLLYNAYKIKP 1520
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1521 WFIPSKLLFFNINENGSENKNINRKQ 1546
Score = 47.4 bits (111), Expect(2) = 2e-14
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK GTNNY+IID IDK+ F L
Sbjct: 1432 EAWIKIDTNKNKNTKTGTNNYQIIDKIDKKDLFYL 1466
>ref|YP_008592994.1| hypothetical chloroplast RF1 (chloroplast) [Camellia impressinervis]
gi|537362582|gb|AGU44388.1| hypothetical chloroplast RF1
(chloroplast) [Camellia impressinervis]
Length = 1873
Score = 56.6 bits (135), Expect(2) = 2e-14
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+LWFFP++V LYN KIKP
Sbjct: 1461 KDLFYLTIPQDQEINSPNQKKIFFDWMGMNEEILSRPISNLKLWFFPEFVLLYNAYKIKP 1520
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1521 WFIPSKLLFFNINENGSENKNINRKQ 1546
Score = 47.4 bits (111), Expect(2) = 2e-14
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK GTNNY+IID IDK+ F L
Sbjct: 1432 EAWIKIDTNKNKNTKTGTNNYQIIDKIDKKDLFYL 1466
>ref|YP_008593083.1| hypothetical chloroplast RF1 (chloroplast) [Camellia pitardii]
gi|537362762|gb|AGU44566.1| hypothetical chloroplast RF1
(chloroplast) [Camellia pitardii]
Length = 1871
Score = 56.6 bits (135), Expect(2) = 2e-14
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+LWFFP++V LYN KIKP
Sbjct: 1459 KDLFYLTIPQDQEINSPNQEKIFFDWMGMNEEILSRPISNLKLWFFPEFVLLYNAYKIKP 1518
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1519 WFIPSKLLFFNINENGSENKNINRKQ 1544
Score = 47.4 bits (111), Expect(2) = 2e-14
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK GTNNY+IID IDK+ F L
Sbjct: 1430 EAWIKIDTNKNKNTKTGTNNYQIIDKIDKKDLFYL 1464
>ref|YP_008592904.1| hypothetical chloroplast RF1 (chloroplast) [Camellia danzaiensis]
gi|537362494|gb|AGU44301.1| hypothetical chloroplast RF1
(chloroplast) [Camellia danzaiensis]
Length = 1871
Score = 56.6 bits (135), Expect(2) = 2e-14
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+LWFFP++V LYN KIKP
Sbjct: 1459 KDLFYLTIPQDQEINSPNQEKIFFDWMGMNEEILSRPISNLKLWFFPEFVLLYNAYKIKP 1518
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1519 WFIPSKLLFFNINENGSENKNINRKQ 1544
Score = 47.4 bits (111), Expect(2) = 2e-14
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK GTNNY+IID IDK+ F L
Sbjct: 1430 EAWIKIDTNKNKNTKTGTNNYQIIDKIDKKDLFYL 1464
>ref|YP_008520200.1| hypothetical chloroplast RF1 (chloroplast) [Camellia taliensis]
gi|537362942|gb|AGU44744.1| hypothetical chloroplast RF1
(chloroplast) [Camellia taliensis]
Length = 1869
Score = 56.6 bits (135), Expect(2) = 2e-14
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+LWFFP++V LYN KIKP
Sbjct: 1459 KDLFYLTIPQDQEINSPNQKKRFFDWMGMNEEILSRPISNLKLWFFPEFVLLYNAYKIKP 1518
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1519 WFIPSKLLFFNINENGSENKNINRKQ 1544
Score = 47.4 bits (111), Expect(2) = 2e-14
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK GTNNY+IID IDK+ F L
Sbjct: 1430 EAWIKIDTNKNKNTKTGTNNYQIIDKIDKKDLFYL 1464
>gb|AGU44477.1| hypothetical chloroplast RF1 (chloroplast) [Camellia taliensis]
Length = 1869
Score = 56.6 bits (135), Expect(2) = 2e-14
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+LWFFP++V LYN KIKP
Sbjct: 1459 KDLFYLTIPQDQEINSPNQKKRFFDWMGMNEEILSRPISNLKLWFFPEFVLLYNAYKIKP 1518
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1519 WFIPSKLLFFNINENGSENKNINRKQ 1544
Score = 47.4 bits (111), Expect(2) = 2e-14
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK GTNNY+IID IDK+ F L
Sbjct: 1430 EAWIKIDTNKNKNTKTGTNNYQIIDKIDKKDLFYL 1464
>ref|YP_008592818.1| hypothetical chloroplast RF1 (chloroplast) [Camellia cuspidata]
gi|537362404|gb|AGU44212.1| hypothetical chloroplast RF1
(chloroplast) [Camellia cuspidata]
Length = 1869
Score = 56.6 bits (135), Expect(2) = 2e-14
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+LWFFP++V LYN KIKP
Sbjct: 1459 KDLFYLTIPQDQEINSPNQKKIFFDWMGMNEEILSRPISNLKLWFFPEFVLLYNAYKIKP 1518
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1519 WFIPSKLLFFNINENGSENKNINRKQ 1544
Score = 47.4 bits (111), Expect(2) = 2e-14
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK GTNNY+IID IDK+ F L
Sbjct: 1430 EAWIKIDTNKNKNTKTGTNNYQIIDKIDKKDLFYL 1464
>gb|AFK81358.1| hypothetical chloroplast RF19 [Camellia sinensis var. assamica]
Length = 1875
Score = 51.6 bits (122), Expect(2) = 7e-13
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+L FFP++V LYN KIKP
Sbjct: 1461 KDLFYLTIPQDQEINSPNQKKIFFDWMGMNEEILSRPISNLKLLFFPEFVLLYNAYKIKP 1520
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1521 WFIPSKLLFFNINENGSENKNINRKQ 1546
Score = 47.4 bits (111), Expect(2) = 7e-13
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK GTNNY+IID IDK+ F L
Sbjct: 1432 EAWIKIDTNKNKNTKTGTNNYQIIDKIDKKDLFYL 1466
>gb|AEC11065.1| photosystem I assembly protein ycf1 protein, partial (chloroplast)
[Camellia sinensis]
Length = 130
Score = 55.1 bits (131), Expect(2) = 8e-13
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ YLTI Q+ +I+SP+ K + PIS L+LWFFP++V LYN KIKP
Sbjct: 54 KDFFYLTIPQDQEINSPNQKKIFFDWMGMNEEILSRPISNLKLWFFPEFVLLYNAYKIKP 113
Query: 81 LGF-TKFVFFTI 49
+K +FF I
Sbjct: 114 WFIPSKLLFFNI 125
Score = 43.9 bits (102), Expect(2) = 8e-13
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+T +NTK TNNY+IID IDK+ F L
Sbjct: 25 EAWIKIDTNKNKNTKTRTNNYQIIDKIDKKDFFYL 59
>ref|YP_007317307.1| Ycf1 (chloroplast) [Camellia sinensis] gi|430728331|gb|AGA55655.1|
Ycf1 (chloroplast) [Camellia sinensis]
Length = 1873
Score = 52.0 bits (123), Expect(2) = 4e-12
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ + +I Q+ +I+SP K +CPI L+LWFFP++V LYN K+KP
Sbjct: 1461 KDFFFFSIPQDQEINSPHQKKIFFDWMGMNEEILSCPILNLKLWFFPEFVLLYNAYKMKP 1520
Query: 81 LGF-TKFVFFTITSLLYEKRKTLKKE 7
+K +FF I E + +K+
Sbjct: 1521 WFIPSKLLFFNINENGSENKNINRKQ 1546
Score = 44.3 bits (103), Expect(2) = 4e-12
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKF 249
E WIKI+T +NTK GTNN++IID IDK+ F
Sbjct: 1432 EAWIKIDTHQNKNTKTGTNNFQIIDKIDKKDFF 1464
>gb|ADD30910.1| putative RF1 protein [Nerium oleander]
Length = 1834
Score = 55.5 bits (132), Expect(2) = 8e-12
Identities = 30/60 (50%), Positives = 36/60 (60%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K VYLT+ Q L+I+ P+ PK N PISTL LWFFP++ LYNL KIKP
Sbjct: 1450 KGLVYLTLPQKLQINLPNPPKGFLDWMGMNEKILNRPISTLGLWFFPEFFLLYNLYKIKP 1509
Score = 40.0 bits (92), Expect(2) = 8e-12
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKR 258
E IKI+TK QNTKI T NY+IID IDK+
Sbjct: 1421 ESCIKIDTKSNQNTKIDTKNYQIIDKIDKK 1450
>gb|ADD30903.1| putative RF1 protein [Aucuba japonica]
Length = 1890
Score = 47.8 bits (112), Expect(2) = 3e-11
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E WIKI+TK +NTKIGTNNY+II+ I+K+ F L
Sbjct: 1446 EAWIKIDTKSNKNTKIGTNNYQIIEKINKKGLFYL 1480
Score = 45.8 bits (107), Expect(2) = 3e-11
Identities = 25/55 (45%), Positives = 31/55 (56%)
Frame = -2
Query: 249 YLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIK 85
YLTI Q+ +I+ P+ K N PIS L LWFFP++V LYN KIK
Sbjct: 1479 YLTIHQDSEINPPNPKKIFFDWMGMNEEILNRPISNLELWFFPEFVLLYNSYKIK 1533
>gb|AGW98845.1| hypothetical chloroplast RF19 (chloroplast) [Operculina macrocarpa]
Length = 1986
Score = 52.0 bits (123), Expect(2) = 2e-10
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ Y+ I QN +I+ P++P + N PIS L LWFFP++VRL+N+ K KP
Sbjct: 1575 KDPFYIPINQNPEINRPNSPNSFFDWMGMNEQILNRPISNLELWFFPEFVRLFNVYKTKP 1634
Score = 38.9 bits (89), Expect(2) = 2e-10
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSK 252
E W+ IN Q T+IGTNN+++ID IDK +
Sbjct: 1515 ESWVPINPSSNQKTRIGTNNFQLIDPIDKEEE 1546
>gb|AGW98859.1| hypothetical chloroplast RF19 (chloroplast) [Operculina macrocarpa]
Length = 1980
Score = 52.0 bits (123), Expect(2) = 2e-10
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = -2
Query: 261 KEQVYLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
K+ Y+ I QN +I+ P++P + N PIS L LWFFP++VRL+N+ K KP
Sbjct: 1569 KDPFYIPINQNPEINRPNSPNSFFDWMGMNEQILNRPISNLELWFFPEFVRLFNVYKTKP 1628
Score = 38.9 bits (89), Expect(2) = 2e-10
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSK 252
E W+ IN Q T+IGTNN+++ID IDK +
Sbjct: 1509 ESWVPINPSSNQKTRIGTNNFQLIDPIDKEEE 1540
>gb|ADD30912.1| putative RF1 protein [Ximenia americana]
Length = 1895
Score = 48.9 bits (115), Expect(2) = 3e-10
Identities = 26/56 (46%), Positives = 36/56 (64%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFILRFCKILKSVHQILQKLF*IEW 180
E WI I+T +NTK GTNNY+IID IDK+S F L + I + ++ K F ++W
Sbjct: 1455 ESWIDIDTNSNKNTKTGTNNYQIIDKIDKKSLFYL-YPTIHQEINPSNPKRFFLDW 1509
Score = 41.2 bits (95), Expect(2) = 3e-10
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = -2
Query: 153 PISTLRLWFFPDYVRLYNLCKIKP 82
PIS +RLWFFP++V LYN KIKP
Sbjct: 1520 PISNMRLWFFPEFVLLYNGYKIKP 1543
>ref|YP_002720024.1| Ycf1 [Nicotiana tabacum]
Length = 1902
Score = 45.4 bits (106), Expect(2) = 8e-10
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E W+KI+T NTKIG NNY+IID IDK+ F L
Sbjct: 1460 EAWVKIDTNSNPNTKIGINNYQIIDKIDKKGFFYL 1494
Score = 43.1 bits (100), Expect(2) = 8e-10
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = -2
Query: 249 YLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
YLTI QN + + ++ K N PI L WFFP++V LYN+ KIKP
Sbjct: 1493 YLTIHQNPENNQKNSKKAFFDWMGMNEKILNRPILNLEFWFFPEFVPLYNVYKIKP 1548
>ref|YP_358745.1| hypothetical protein NisyCp102 [Nicotiana sylvestris]
gi|231660|sp|P12222.2|YCF1_TOBAC RecName: Full=Putative
membrane protein ycf1; AltName: Full=ORF 1901
gi|118574758|sp|Q3C1P6.1|YCF1_NICSY RecName:
Full=Putative membrane protein ycf1
gi|76559647|emb|CAJ32485.1| hypothetical protein
[Nicotiana tabacum] gi|77799633|dbj|BAE46722.1|
hypothetical protein [Nicotiana sylvestris]
Length = 1901
Score = 45.4 bits (106), Expect(2) = 8e-10
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = -3
Query: 347 EPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
E W+KI+T NTKIG NNY+IID IDK+ F L
Sbjct: 1459 EAWVKIDTNSNPNTKIGINNYQIIDKIDKKGFFYL 1493
Score = 43.1 bits (100), Expect(2) = 8e-10
Identities = 23/56 (41%), Positives = 30/56 (53%)
Frame = -2
Query: 249 YLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP 82
YLTI QN + + ++ K N PI L WFFP++V LYN+ KIKP
Sbjct: 1492 YLTIHQNPENNQKNSKKAFFDWMGMNEKILNRPILNLEFWFFPEFVPLYNVYKIKP 1547
>ref|YP_538908.1| hypothetical chloroplast RF1 [Solanum bulbocastanum]
gi|118577980|sp|Q2MIC9.1|YCF1_SOLBU RecName:
Full=Putative membrane protein ycf1; Short=RF1
gi|84371954|gb|ABC56272.1| hypothetical chloroplast RF1
[Solanum bulbocastanum]
Length = 1887
Score = 45.8 bits (107), Expect(2) = 8e-10
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 359 RGVCEPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
+G E W+KI+T NTKIG NNY+IID I+K+ F L
Sbjct: 1447 KGDIEAWVKIDTNSNPNTKIGINNYQIIDKIEKKGVFYL 1485
Score = 42.7 bits (99), Expect(2) = 8e-10
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 249 YLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP-LGF 73
YLT QN + + ++ K N PI L WFFP++V LYN+ KIKP +
Sbjct: 1484 YLTTHQNPEKTQKNSKKVFFDWMGMNEKIFNRPILNLEFWFFPEFVLLYNVYKIKPWIIP 1543
Query: 72 TKFVFFTITS 43
+KF+ F + +
Sbjct: 1544 SKFLLFNLNT 1553
>ref|YP_635697.1| hypothetical chloroplast RF1 [Solanum tuberosum]
gi|118577982|sp|Q2VEC3.1|YCF1_SOLTU RecName:
Full=Putative membrane protein ycf1; Short=RF1
gi|82754681|gb|ABB90095.1| ycf1 protein [Solanum
tuberosum] gi|88656862|gb|ABD47115.1| hypothetical
chloroplast RF1 [Solanum tuberosum]
Length = 1887
Score = 45.8 bits (107), Expect(2) = 8e-10
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 359 RGVCEPWIKINTKHCQNTKIGTNNYRIID*IDKRSKFIL 243
+G E W+KI+T NTKIG NNY+IID I+K+ F L
Sbjct: 1447 KGDIEAWVKIDTNSNPNTKIGINNYQIIDKIEKKGVFYL 1485
Score = 42.7 bits (99), Expect(2) = 8e-10
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 249 YLTILQNLKISSPDTPKTXXXXXXXXXXXXNCPISTLRLWFFPDYVRLYNLCKIKP-LGF 73
YLT QN + + ++ K N PI L WFFP++V LYN+ KIKP +
Sbjct: 1484 YLTTHQNPEKTQKNSKKVFFDWMGMNEKIFNRPILNLEFWFFPEFVLLYNVYKIKPWIIP 1543
Query: 72 TKFVFFTITS 43
+KF+ F + +
Sbjct: 1544 SKFLLFNLNT 1553