BLASTX nr result
ID: Rauwolfia21_contig00047107
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00047107
(373 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004241042.1| PREDICTED: probable RNA helicase SDE3-like [... 92 5e-17
ref|XP_006350649.1| PREDICTED: probable RNA helicase SDE3-like [... 89 5e-16
ref|XP_004241145.1| PREDICTED: probable RNA helicase SDE3-like [... 88 1e-15
ref|XP_004297116.1| PREDICTED: probable RNA helicase SDE3-like [... 84 1e-14
gb|EPS65837.1| hypothetical protein M569_08940, partial [Genlise... 83 4e-14
ref|XP_002517101.1| ATP-dependent helicase NAM7, putative [Ricin... 80 3e-13
ref|XP_006382735.1| hypothetical protein POPTR_0005s04900g [Popu... 80 4e-13
gb|EXC18947.1| hypothetical protein L484_002591 [Morus notabilis] 79 6e-13
ref|XP_002512265.1| ATP-dependent helicase NAM7, putative [Ricin... 79 8e-13
gb|EOY05735.1| P-loop containing nucleoside triphosphate hydrola... 78 1e-12
gb|EMJ28216.1| hypothetical protein PRUPE_ppa001136mg [Prunus pe... 78 1e-12
ref|XP_006306654.1| hypothetical protein CARUB_v10008170mg, part... 73 4e-11
ref|XP_006471775.1| PREDICTED: probable RNA helicase SDE3-like [... 70 4e-10
ref|XP_004139814.1| PREDICTED: probable RNA helicase SDE3-like [... 70 4e-10
gb|AAK40099.1|AF339908_1 RNA helicase SDE3 [Arabidopsis thaliana] 70 4e-10
gb|AAF79736.1|AC005106_17 T25N20.11 [Arabidopsis thaliana] 70 4e-10
ref|NP_172037.1| putative RNA helicase SDE3 [Arabidopsis thalian... 70 4e-10
ref|XP_006489427.1| PREDICTED: probable RNA helicase SDE3-like i... 69 8e-10
ref|XP_002282919.1| PREDICTED: probable RNA helicase SDE3 [Vitis... 69 8e-10
emb|CAN83068.1| hypothetical protein VITISV_014567 [Vitis vinifera] 69 8e-10
>ref|XP_004241042.1| PREDICTED: probable RNA helicase SDE3-like [Solanum lycopersicum]
Length = 956
Score = 92.4 bits (228), Expect = 5e-17
Identities = 44/65 (67%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Frame = -3
Query: 194 MGTM-FKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSG 18
MGT+ +KSDDEYS I DKGDIGF+D +S SYNP EESD+ ++SVPFPLV GKP+SG
Sbjct: 1 MGTISYKSDDEYSTITDKGDIGFVDFDKYKSAGSYNPNEESDIVVISVPFPLVAGKPKSG 60
Query: 17 LVGET 3
VGET
Sbjct: 61 FVGET 65
>ref|XP_006350649.1| PREDICTED: probable RNA helicase SDE3-like [Solanum tuberosum]
Length = 956
Score = 89.4 bits (220), Expect = 5e-16
Identities = 44/65 (67%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = -3
Query: 194 MGTM-FKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSG 18
MGT+ +KSDDEYS I DKGDIGF+D +S SYNP EESD+ +VSVPF LV GKP+SG
Sbjct: 1 MGTISYKSDDEYSTITDKGDIGFVDFDKYKSAGSYNPNEESDIVVVSVPFRLVAGKPKSG 60
Query: 17 LVGET 3
VGET
Sbjct: 61 FVGET 65
>ref|XP_004241145.1| PREDICTED: probable RNA helicase SDE3-like [Solanum lycopersicum]
Length = 911
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = -3
Query: 182 FKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
+ SDDEYS I DKGDIGF+D +S SYNP EESD+ ++SVPFPL+ GKP+SG VGET
Sbjct: 6 YNSDDEYSTITDKGDIGFVDFDKYKSAYSYNPDEESDIVVISVPFPLIEGKPKSGFVGET 65
>ref|XP_004297116.1| PREDICTED: probable RNA helicase SDE3-like [Fragaria vesca subsp.
vesca]
Length = 907
Score = 84.3 bits (207), Expect = 1e-14
Identities = 42/63 (66%), Positives = 51/63 (80%), Gaps = 4/63 (6%)
Frame = -3
Query: 179 KSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGG----KPQSGLV 12
++D+E SVIGDKGDIGFID D +S+CSYNPAEE + ++SVPFPLVGG KPQS +V
Sbjct: 7 RADEECSVIGDKGDIGFIDFNDDKSVCSYNPAEEGPI-VISVPFPLVGGKQGQKPQSVVV 65
Query: 11 GET 3
GET
Sbjct: 66 GET 68
>gb|EPS65837.1| hypothetical protein M569_08940, partial [Genlisea aurea]
Length = 307
Score = 82.8 bits (203), Expect = 4e-14
Identities = 40/59 (67%), Positives = 46/59 (77%)
Frame = -3
Query: 179 KSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
KSD+EYSVI DKGDIGF+DL C S YNP+ ESD+ +SVPF L+ KPQSGLVGET
Sbjct: 1 KSDEEYSVIEDKGDIGFVDLGMCLSDLMYNPSGESDIVHISVPFALIDKKPQSGLVGET 59
>ref|XP_002517101.1| ATP-dependent helicase NAM7, putative [Ricinus communis]
gi|223543736|gb|EEF45264.1| ATP-dependent helicase NAM7,
putative [Ricinus communis]
Length = 882
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/57 (64%), Positives = 46/57 (80%)
Frame = -3
Query: 173 DDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
DDEYSVIGDKG+IGFID +D +S+CSY+P EE + +SVPFP GKPQS ++GET
Sbjct: 10 DDEYSVIGDKGEIGFIDYQDDKSVCSYDPIEEGPI-FISVPFPFENGKPQSVVLGET 65
>ref|XP_006382735.1| hypothetical protein POPTR_0005s04900g [Populus trichocarpa]
gi|550338102|gb|ERP60532.1| hypothetical protein
POPTR_0005s04900g [Populus trichocarpa]
Length = 882
Score = 79.7 bits (195), Expect = 4e-13
Identities = 35/56 (62%), Positives = 47/56 (83%)
Frame = -3
Query: 173 DDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGE 6
DDEYS+IGDKG+IGFID +D +S+C+Y+PA E + ++S+PFP V GKPQ+ LVGE
Sbjct: 10 DDEYSIIGDKGEIGFIDFEDDKSVCNYDPATEGPI-VISIPFPFVRGKPQTILVGE 64
>gb|EXC18947.1| hypothetical protein L484_002591 [Morus notabilis]
Length = 909
Score = 79.0 bits (193), Expect = 6e-13
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = -3
Query: 194 MGTMFK-SDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSG 18
MGT++K S +E SVIG+KG+IGFID +D S+CSYN EE + I+SVPFP V GKPQS
Sbjct: 1 MGTVYKDSGEECSVIGEKGEIGFIDYEDDRSVCSYNTVEEGPI-IISVPFPFVNGKPQSI 59
Query: 17 LVGE 6
+VGE
Sbjct: 60 VVGE 63
>ref|XP_002512265.1| ATP-dependent helicase NAM7, putative [Ricinus communis]
gi|223548226|gb|EEF49717.1| ATP-dependent helicase NAM7,
putative [Ricinus communis]
Length = 850
Score = 78.6 bits (192), Expect = 8e-13
Identities = 43/66 (65%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Frame = -3
Query: 194 MGTMFKS--DDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQS 21
MGT+ K DDEYS IGDKGDIGFID +D S+C+Y+ EE VAI S PFPLV KPQS
Sbjct: 1 MGTIKKDNWDDEYSFIGDKGDIGFIDFEDERSVCNYDLNEEGPVAI-SAPFPLVRRKPQS 59
Query: 20 GLVGET 3
L+GET
Sbjct: 60 ILIGET 65
>gb|EOY05735.1| P-loop containing nucleoside triphosphate hydrolases superfamily
protein [Theobroma cacao]
Length = 876
Score = 78.2 bits (191), Expect = 1e-12
Identities = 38/62 (61%), Positives = 46/62 (74%)
Frame = -3
Query: 188 TMFKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVG 9
T +K DDEYSVIGDKG+I FID ++ S+C+YNP EE V +VS PF + GKPQS VG
Sbjct: 4 TGYKWDDEYSVIGDKGEIDFIDYENDNSVCNYNPLEEGPV-VVSAPFSFIDGKPQSVFVG 62
Query: 8 ET 3
ET
Sbjct: 63 ET 64
>gb|EMJ28216.1| hypothetical protein PRUPE_ppa001136mg [Prunus persica]
Length = 898
Score = 77.8 bits (190), Expect = 1e-12
Identities = 40/64 (62%), Positives = 49/64 (76%), Gaps = 4/64 (6%)
Frame = -3
Query: 182 FKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGG----KPQSGL 15
+KSD+E SVIGDKG+IGFID +D +S+ SYNP EE + ++SVPFP VGG KPQS
Sbjct: 6 YKSDEECSVIGDKGEIGFIDFEDDKSVRSYNPCEEGPI-VISVPFPYVGGKQGEKPQSVC 64
Query: 14 VGET 3
VGET
Sbjct: 65 VGET 68
>ref|XP_006306654.1| hypothetical protein CARUB_v10008170mg, partial [Capsella rubella]
gi|482575365|gb|EOA39552.1| hypothetical protein
CARUB_v10008170mg, partial [Capsella rubella]
Length = 1034
Score = 72.8 bits (177), Expect = 4e-11
Identities = 38/60 (63%), Positives = 44/60 (73%)
Frame = -3
Query: 182 FKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
+KSDDEYSVI DKG+IGFID ++ S YNP +E V +VSVPFP KPQS LVGET
Sbjct: 41 YKSDDEYSVIADKGEIGFIDYQNDGSAGCYNPLDEGPV-VVSVPFPFKNEKPQSILVGET 99
>ref|XP_006471775.1| PREDICTED: probable RNA helicase SDE3-like [Citrus sinensis]
Length = 876
Score = 69.7 bits (169), Expect = 4e-10
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = -3
Query: 173 DDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
DDE SV G+K +IGFID +D S+ SY+P+ E V I+SVPFP V GKPQS LVGET
Sbjct: 10 DDECSVTGEKREIGFIDFQDDHSVLSYDPSGEGPV-IISVPFPFVQGKPQSILVGET 65
>ref|XP_004139814.1| PREDICTED: probable RNA helicase SDE3-like [Cucumis sativus]
gi|449492596|ref|XP_004159043.1| PREDICTED: probable RNA
helicase SDE3-like [Cucumis sativus]
Length = 886
Score = 69.7 bits (169), Expect = 4e-10
Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Frame = -3
Query: 194 MGTMFKS-DDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSG 18
MGT+ + D+ SVI DKG+I +ID +D +S+CSYNP EE + IVSVPF V GKP+S
Sbjct: 1 MGTIGDNWGDDCSVIKDKGEISYIDYEDDQSVCSYNPIEEGPI-IVSVPFAFVNGKPRSV 59
Query: 17 LVGET 3
VGET
Sbjct: 60 FVGET 64
>gb|AAK40099.1|AF339908_1 RNA helicase SDE3 [Arabidopsis thaliana]
Length = 1002
Score = 69.7 bits (169), Expect = 4e-10
Identities = 37/60 (61%), Positives = 43/60 (71%)
Frame = -3
Query: 182 FKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
+KSDDEYSVI DKG+IGFID ++ S YNP +E V +VSVPFP KPQS VGET
Sbjct: 6 YKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPV-VVSVPFPFKKEKPQSVTVGET 64
>gb|AAF79736.1|AC005106_17 T25N20.11 [Arabidopsis thaliana]
Length = 1048
Score = 69.7 bits (169), Expect = 4e-10
Identities = 37/60 (61%), Positives = 43/60 (71%)
Frame = -3
Query: 182 FKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
+KSDDEYSVI DKG+IGFID ++ S YNP +E V +VSVPFP KPQS VGET
Sbjct: 25 YKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPV-VVSVPFPFKKEKPQSVTVGET 83
>ref|NP_172037.1| putative RNA helicase SDE3 [Arabidopsis thaliana]
gi|50401594|sp|Q8GYD9.1|SDE3_ARATH RecName:
Full=Probable RNA helicase SDE3; AltName: Full=Silencing
defective protein 3 gi|26450472|dbj|BAC42350.1| unknown
protein [Arabidopsis thaliana]
gi|332189722|gb|AEE27843.1| putative RNA helicase SDE3
[Arabidopsis thaliana]
Length = 1002
Score = 69.7 bits (169), Expect = 4e-10
Identities = 37/60 (61%), Positives = 43/60 (71%)
Frame = -3
Query: 182 FKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
+KSDDEYSVI DKG+IGFID ++ S YNP +E V +VSVPFP KPQS VGET
Sbjct: 6 YKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPV-VVSVPFPFKKEKPQSVTVGET 64
>ref|XP_006489427.1| PREDICTED: probable RNA helicase SDE3-like isoform X1 [Citrus
sinensis]
Length = 891
Score = 68.6 bits (166), Expect = 8e-10
Identities = 39/79 (49%), Positives = 48/79 (60%)
Frame = -3
Query: 239 YWCTN*VFLNTFLVKMGTMFKSDDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIV 60
+WCT F + M T+ DD + +K DIGFID +D +S CSYNP+EE V I
Sbjct: 11 WWCT-------FCLMMDTV--GDDNWGNEWEKRDIGFIDFEDYKSECSYNPSEEDPVQI- 60
Query: 59 SVPFPLVGGKPQSGLVGET 3
S PFP + GKPQS VGET
Sbjct: 61 SFPFPFIDGKPQSVSVGET 79
>ref|XP_002282919.1| PREDICTED: probable RNA helicase SDE3 [Vitis vinifera]
gi|297737082|emb|CBI26283.3| unnamed protein product
[Vitis vinifera]
Length = 877
Score = 68.6 bits (166), Expect = 8e-10
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = -3
Query: 173 DDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
DDE SVIGDKG+IGFID ++ S+C YNP+EE V +VSVPF GKP+S VGET
Sbjct: 7 DDECSVIGDKGEIGFIDFENDASVCDYNPSEEGPV-VVSVPFAF-KGKPKSIFVGET 61
>emb|CAN83068.1| hypothetical protein VITISV_014567 [Vitis vinifera]
Length = 877
Score = 68.6 bits (166), Expect = 8e-10
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = -3
Query: 173 DDEYSVIGDKGDIGFIDLKDCESICSYNPAEESDVAIVSVPFPLVGGKPQSGLVGET 3
DDE SVIGDKG+IGFID ++ S+C YNP+EE V +VSVPF GKP+S VGET
Sbjct: 7 DDECSVIGDKGEIGFIDFENDASVCDYNPSEEGPV-VVSVPFAF-KGKPKSIFVGET 61