BLASTX nr result
ID: Rauwolfia21_contig00045319
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00045319
(589 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II su... 305 8e-81
gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus pe... 304 1e-80
ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago trunca... 304 1e-80
gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus... 303 2e-80
ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II su... 303 2e-80
ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Popu... 303 2e-80
ref|XP_002305137.1| predicted protein [Populus trichocarpa] 303 2e-80
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 303 3e-80
gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus not... 302 4e-80
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh... 301 6e-80
ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II su... 301 8e-80
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 301 8e-80
gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia... 301 8e-80
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 301 1e-79
ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Ar... 300 1e-79
gb|ESW10701.1| hypothetical protein PHAVU_009G230400g [Phaseolus... 300 1e-79
ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Caps... 300 1e-79
ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II su... 300 1e-79
ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arab... 300 1e-79
emb|CAA79527.1| RNA polymerase II second largest subunit [Arabid... 300 1e-79
>ref|XP_004499217.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cicer
arietinum]
Length = 1194
Score = 305 bits (780), Expect = 8e-81
Identities = 144/164 (87%), Positives = 156/164 (95%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1029 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1089 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKNSFECRGCK 1148
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQVYIPYACKLL QELM+MAIAPR+LTK+++S++ +KKK
Sbjct: 1149 NKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEIKSIKDQKKK 1192
>gb|EMJ15758.1| hypothetical protein PRUPE_ppa000425mg [Prunus persica]
Length = 1192
Score = 304 bits (779), Expect = 1e-80
Identities = 145/164 (88%), Positives = 154/164 (93%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1027 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1086
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1087 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1146
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQVYIPYACKLL QELMSMAIAPR+LTKD++ + +KKK
Sbjct: 1147 NKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKDIKPAKDQKKK 1190
>ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase
[Medicago truncatula]
Length = 1213
Score = 304 bits (778), Expect = 1e-80
Identities = 144/164 (87%), Positives = 156/164 (95%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1048 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1107
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1108 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1167
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQVYIPYACKLL QELM+MAIAPR+LTK+V++++ +KKK
Sbjct: 1168 NKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKAIKDQKKK 1211
>gb|ESW20162.1| hypothetical protein PHAVU_006G185800g [Phaseolus vulgaris]
Length = 1194
Score = 303 bits (777), Expect = 2e-80
Identities = 144/164 (87%), Positives = 155/164 (94%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1029 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1089 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1148
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQVYIPYACKLL QELM+MAIAPR+LTK+++S + +KKK
Sbjct: 1149 NKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEIKSAKDQKKK 1192
>ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus] gi|449479313|ref|XP_004155566.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
sativus]
Length = 1199
Score = 303 bits (777), Expect = 2e-80
Identities = 143/164 (87%), Positives = 154/164 (93%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1034 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1093
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGL+AIA+LKKSSFECRGCK
Sbjct: 1094 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCECCGLIAIANLKKSSFECRGCK 1153
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQVYIPYACKLL QELM+MAIAPR+ TK+++ L+ +KKK
Sbjct: 1154 NKTDIVQVYIPYACKLLFQELMAMAIAPRMFTKEIKPLKDQKKK 1197
>ref|XP_002305136.2| hypothetical protein POPTR_0004s04320g [Populus trichocarpa]
gi|550340301|gb|EEE85647.2| hypothetical protein
POPTR_0004s04320g [Populus trichocarpa]
Length = 1215
Score = 303 bits (776), Expect = 2e-80
Identities = 144/164 (87%), Positives = 155/164 (94%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1050 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1109
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1110 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1169
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQV+IPYACKLL QELM+MAIAPR+LTKD++ +S+KKK
Sbjct: 1170 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKK 1213
>ref|XP_002305137.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 303 bits (776), Expect = 2e-80
Identities = 144/164 (87%), Positives = 155/164 (94%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 256 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 315
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 316 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 375
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQV+IPYACKLL QELM+MAIAPR+LTKD++ +S+KKK
Sbjct: 376 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKK 419
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 303 bits (775), Expect = 3e-80
Identities = 144/165 (87%), Positives = 155/165 (93%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1026 MRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1085
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1086 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCK 1145
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKKK 95
NKT IVQV+IPYACKLL QELMSMAIAPR+LTKDV+ + +KKK+
Sbjct: 1146 NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVKQAKDKKKKQ 1190
>gb|EXC18122.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 1193
Score = 302 bits (774), Expect = 4e-80
Identities = 145/164 (88%), Positives = 154/164 (93%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1028 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1087
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1088 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1147
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQV+IPYACKLL QELM+MAIAPR+LTKDV+ L +KKK
Sbjct: 1148 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPLNDQKKK 1191
>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 301 bits (772), Expect = 6e-80
Identities = 142/164 (86%), Positives = 154/164 (93%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1035 MRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1094
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR+HVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1095 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECRGCK 1154
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQV+IPYACKLL QELMSMAIAPR+LTKD++ + ++KK
Sbjct: 1155 NKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDIKQSKEQRKK 1198
>ref|XP_006347043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Solanum
tuberosum]
Length = 1191
Score = 301 bits (771), Expect = 8e-80
Identities = 144/164 (87%), Positives = 154/164 (93%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1026 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1085
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1086 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1145
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQV+IPYACKLL QELM+MAIAPR+LTKDV+ + +KKK
Sbjct: 1146 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKK 1189
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 301 bits (771), Expect = 8e-80
Identities = 144/164 (87%), Positives = 154/164 (93%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1026 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1085
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1086 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1145
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQV+IPYACKLL QELM+MAIAPR+LTKDV+ + +KKK
Sbjct: 1146 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKLAKDQKKK 1189
>gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1195
Score = 301 bits (771), Expect = 8e-80
Identities = 144/164 (87%), Positives = 154/164 (93%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1030 MRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1089
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1090 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1149
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQV+IPYACKLL QELM+MAIAPR+LTKDV+ + +KKK
Sbjct: 1150 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQARDQKKK 1193
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 301 bits (770), Expect = 1e-79
Identities = 144/164 (87%), Positives = 154/164 (93%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1029 MRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1088
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1089 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1148
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKK 98
NKT IVQV+IPYACKLL QELM+MAIAPR+LTKDV+ + +KKK
Sbjct: 1149 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPTKDQKKK 1192
>ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
gi|21542437|sp|P38420.2|NRPB2_ARATH RecName:
Full=DNA-directed RNA polymerase II subunit 2; AltName:
Full=DNA-directed RNA polymerase II 135 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit
RPB2; Short=RNA polymerase II subunit 2; Short=RNA
polymerase II subunit B2; AltName: Full=Protein EMBRYO
DEFECTIVE 1989 gi|4455279|emb|CAB36815.1| DNA-directed
RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana] gi|7268968|emb|CAB81278.1|
DNA-directed RNA polymerase (EC 2.7.7.6) II second
largest chain [Arabidopsis thaliana]
gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase
II subunit RPB2 [Arabidopsis thaliana]
Length = 1188
Score = 300 bits (769), Expect = 1e-79
Identities = 143/162 (88%), Positives = 153/162 (94%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFERMYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1027 MRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1086
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE+CGL+AIA+LKK+SFECRGCK
Sbjct: 1087 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCK 1146
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEK 104
NKT IVQVYIPYACKLL QELMSMAIAPR+LTK ++S + +
Sbjct: 1147 NKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKHLKSAKGRQ 1188
>gb|ESW10701.1| hypothetical protein PHAVU_009G230400g [Phaseolus vulgaris]
Length = 1196
Score = 300 bits (769), Expect = 1e-79
Identities = 142/165 (86%), Positives = 156/165 (94%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1027 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1086
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1087 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCK 1146
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKKKK 95
NKT IVQV+IPYACKLL QELM+MAIAPR+LTKDV+S + +++++
Sbjct: 1147 NKTDIVQVFIPYACKLLFQELMAMAIAPRMLTKDVKSKKDQRRRE 1191
>ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Capsella rubella]
gi|482554282|gb|EOA18475.1| hypothetical protein
CARUB_v10007021mg [Capsella rubella]
Length = 1188
Score = 300 bits (769), Expect = 1e-79
Identities = 143/162 (88%), Positives = 153/162 (94%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFERMYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1027 MRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1086
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE+CGL+AIA+LKK+SFECRGCK
Sbjct: 1087 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCK 1146
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEK 104
NKT IVQVYIPYACKLL QELMSMAIAPR+LTK ++S + +
Sbjct: 1147 NKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKHLKSAKGRQ 1188
>ref|XP_004294022.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Fragaria
vesca subsp. vesca]
Length = 1191
Score = 300 bits (769), Expect = 1e-79
Identities = 143/163 (87%), Positives = 154/163 (94%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFE MYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1027 MRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1086
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE CGL+AIA+LKK+SFECRGCK
Sbjct: 1087 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCK 1146
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEKK 101
NKT IVQV+IPYACKLL QELM+MAIAPR+LTKDV+ ++ +KK
Sbjct: 1147 NKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPIKDKKK 1189
>ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata] gi|297313665|gb|EFH44088.1| hypothetical protein
ARALYDRAFT_492703 [Arabidopsis lyrata subsp. lyrata]
Length = 1188
Score = 300 bits (769), Expect = 1e-79
Identities = 143/162 (88%), Positives = 153/162 (94%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFERMYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1027 MRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1086
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE+CGL+AIA+LKK+SFECRGCK
Sbjct: 1087 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCK 1146
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEK 104
NKT IVQVYIPYACKLL QELMSMAIAPR+LTK ++S + +
Sbjct: 1147 NKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKHLKSAKGRQ 1188
>emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 300 bits (769), Expect = 1e-79
Identities = 143/162 (88%), Positives = 153/162 (94%)
Frame = -1
Query: 589 MRGFERMYNGHTGRIMGDMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 410
MRGFERMYNGHTGR + MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
Sbjct: 1027 MRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD 1086
Query: 409 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEICGLVAIASLKKSSFECRGCK 230
GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE+CGL+AIA+LKK+SFECRGCK
Sbjct: 1087 GGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCK 1146
Query: 229 NKTAIVQVYIPYACKLLLQELMSMAIAPRLLTKDVESLQSEK 104
NKT IVQVYIPYACKLL QELMSMAIAPR+LTK ++S + +
Sbjct: 1147 NKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKHLKSAKGRQ 1188