BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00043903
         (253 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain...    60   3e-07
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]...    59   7e-07

>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
            protein; Short=MP; Contains: RecName: Full=Capsid
            protein; Short=CP; Contains: RecName: Full=Aspartic
            protease; Short=PR; Contains: RecName: Full=Reverse
            transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
            polyprotein 1 [Petunia vein clearing virus]
          Length = 2180

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
 Frame = +2

Query: 5    KYSEAQKYIFEQNRIIPTDIWPNDMGSWNY-FTDHPHSINIRIAQNWYLQ-NCYSQTDTE 178
            +YSE Q++IF++N+ IP +IWP  +GSWNY  +DHPH   IR A   Y + N Y Q D +
Sbjct: 2012 EYSELQRFIFQENKCIPKEIWPGSLGSWNYGNSDHPHGQWIRDALREYREMNDYFQ-DAQ 2070

Query: 179  QPF 187
             P+
Sbjct: 2071 DPY 2073


>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
            gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
            polyprotein; Contains: RecName: Full=Movement protein;
            Short=MP; Contains: RecName: Full=Capsid protein;
            Short=CP; Contains: RecName: Full=Aspartic protease;
            Short=PR; Contains: RecName: Full=Reverse transcriptase;
            Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
            [petunia vein clearing virus]
          Length = 2179

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
 Frame = +2

Query: 5    KYSEAQKYIFEQNRIIPTDIWPNDMGSWNY-FTDHPHSINIRIAQNWYLQ-NCYSQTDTE 178
            +YSE Q++IF++N+ IP +IWP   GSWNY  +DHPH   IR A   Y + N Y Q D +
Sbjct: 2011 EYSELQRFIFQENKCIPKEIWPGSSGSWNYGNSDHPHGQWIRDALREYREMNDYFQ-DAQ 2069

Query: 179  QPF 187
             P+
Sbjct: 2070 DPY 2072