BLASTX nr result
ID: Rauwolfia21_contig00042227
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00042227
(598 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 150 3e-34
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera] 149 4e-34
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera] 147 2e-33
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 143 3e-32
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 133 3e-29
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 133 4e-29
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 132 9e-29
gb|ABW74566.1| integrase [Boechera divaricarpa] 131 1e-28
gb|ABR16307.1| unknown [Picea sitchensis] 131 2e-28
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 130 3e-28
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 130 3e-28
gb|ABA99612.1| retrotransposon protein, putative, unclassified [... 130 3e-28
gb|ABA95820.1| retrotransposon protein, putative, unclassified [... 130 3e-28
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza... 130 3e-28
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat... 130 3e-28
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 130 3e-28
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 129 8e-28
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group] 127 2e-27
pir||S00954 pol polyprotein - fruit fly (Drosophila melanogaster... 126 5e-27
gb|ABR67407.1| integrase [Cucumis melo subsp. melo] 126 5e-27
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 150 bits (378), Expect = 3e-34
Identities = 94/202 (46%), Positives = 124/202 (61%), Gaps = 14/202 (6%)
Frame = -3
Query: 566 VQGYNKMDEV--CEWCIYGKMHRLPFSKIAWRAKAHSS*SMLIFAAL---LKTPFIGNKR 402
V G K+D V CE CIYGK + PF K R++ SS +I A L ++T G R
Sbjct: 446 VFGLPKIDSVNVCEGCIYGKQSKKPFPK--GRSRRASSCLEIIHADLCGPMQTASFGGSR 503
Query: 401 YFILFVDDYSRMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFM 222
YF+LF DD+SRM +YFL +AETF +FKA EKQSG+ +KVL T GG+F+S F
Sbjct: 504 YFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFK 563
Query: 221 NYYKENGIR*QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK-LAN------ 63
+ +E G+ +L T ++P +NGVAE KNRT+VEMARSM+K K L+N
Sbjct: 564 VFXEEEGLHREL--------TTPYSPXQNGVAERKNRTVVEMARSMMKAKNLSNHFWAEG 615
Query: 62 --TTVYIFHRSPTKAVRNKTPF 3
T VY+ + SPTKAV N+TP+
Sbjct: 616 VATAVYLLNISPTKAVLNRTPY 637
>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
Length = 1274
Score = 149 bits (377), Expect = 4e-34
Identities = 94/202 (46%), Positives = 124/202 (61%), Gaps = 14/202 (6%)
Frame = -3
Query: 566 VQGYNKMDEV--CEWCIYGKMHRLPFSKIAWRAKAHSS*SMLIFAAL---LKTPFIGNKR 402
V G K+D V CE CIYGK + PF K R++ SS +I A L ++T G R
Sbjct: 461 VFGLPKIDSVNVCEGCIYGKQSKKPFPK--GRSRRASSCLEIIHADLCGPMQTASFGGSR 518
Query: 401 YFILFVDDYSRMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFM 222
YF+LF DD+SRM +YFL +AETF +FKA EKQSG+ +KVL T GG+F+S F
Sbjct: 519 YFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFK 578
Query: 221 NYYKENGIR*QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK-LAN------ 63
+ +E G+ +L T ++P +NGVAE KNRT+VEMARSM+K K L+N
Sbjct: 579 VFCEEEGLHREL--------TTPYSPEQNGVAERKNRTVVEMARSMMKAKNLSNHFWAEG 630
Query: 62 --TTVYIFHRSPTKAVRNKTPF 3
T VY+ + SPTKAV N+TP+
Sbjct: 631 VATAVYLLNISPTKAVLNRTPY 652
>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 147 bits (372), Expect = 2e-33
Identities = 93/202 (46%), Positives = 124/202 (61%), Gaps = 14/202 (6%)
Frame = -3
Query: 566 VQGYNKMDEV--CEWCIYGKMHRLPFSKIAWRAKAHSS*SMLIFAAL---LKTPFIGNKR 402
V G K+D V CE CIYGK + PF K R++ SS +I A L ++T G R
Sbjct: 395 VFGLPKIDSVNVCEGCIYGKQSKKPFPK--GRSRRASSCLEIIHADLCGPMQTASFGGSR 452
Query: 401 YFILFVDDYSRMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFM 222
YF+LF +D+SRM +YFL +AETF +FKA EKQSG+ +KVL T GG+F+S F
Sbjct: 453 YFLLFTNDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRGGEFLSNDFK 512
Query: 221 NYYKENGIR*QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK-LAN------ 63
+ +E G+ +L T ++P +NGVAE KNRT+VEMARSM+K K L+N
Sbjct: 513 VFCEEEGLHREL--------TTPYSPEQNGVAERKNRTVVEMARSMMKAKNLSNHFWAEG 564
Query: 62 --TTVYIFHRSPTKAVRNKTPF 3
T VY+ + SPTKAV N+TP+
Sbjct: 565 VATAVYLLNISPTKAVLNRTPY 586
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 143 bits (361), Expect = 3e-32
Identities = 88/191 (46%), Positives = 117/191 (61%), Gaps = 12/191 (6%)
Frame = -3
Query: 539 VCEWCIYGKMHRLPFSKIAWRAKAHSS*SMLIFAAL---LKTPFIGNKRYFILFVDDYSR 369
VCE CIYGK + PF K R++ SS +I A L ++T G RYF+LF DD+SR
Sbjct: 583 VCEGCIYGKQSKKPFPK--GRSRRASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSR 640
Query: 368 MMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*Q 189
M +YFL +AETF +FKA EKQSG+ +KVL T G+F+S F + +E G+ +
Sbjct: 641 MSWVYFLQSKAETFETFKKFKAFVEKQSGKCIKVLRTDRXGEFLSNDFKVFCEEEGLHRE 700
Query: 188 LTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK-LAN--------TTVYIFHRS 36
L T ++P +NGVAE KNRT+VEMARSM+ K L+N T VY+ + S
Sbjct: 701 L--------TTPYSPEQNGVAERKNRTVVEMARSMMXAKNLSNHFWAEGVATAVYLLNIS 752
Query: 35 PTKAVRNKTPF 3
PTKAV N+TP+
Sbjct: 753 PTKAVLNRTPY 763
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 133 bits (335), Expect = 3e-29
Identities = 82/190 (43%), Positives = 105/190 (55%), Gaps = 11/190 (5%)
Frame = -3
Query: 542 EVCEWCIYGKMHR--LPFSKIAWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDDYSR 369
++CE CIYGK R P K +WRA +K +G RYF++F DDYSR
Sbjct: 476 DLCEGCIYGKQTRKSFPVGK-SWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSR 534
Query: 368 MMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*Q 189
+YFL ++ETF +FKA E QSG +K L T GG+F+S F + +ENGIR +
Sbjct: 535 FSWVYFLKFKSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRE 594
Query: 188 LTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVK---------GKLANTTVYIFHRS 36
L T +TP +NGVAE KNRT+VEMARS +K G+ T VY + S
Sbjct: 595 L--------TAPYTPEQNGVAERKNRTVVEMARSSLKAKGLPDYFWGEAVATVVYFLNIS 646
Query: 35 PTKAVRNKTP 6
PTK V N TP
Sbjct: 647 PTKDVWNTTP 656
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 133 bits (334), Expect = 4e-29
Identities = 78/194 (40%), Positives = 113/194 (58%), Gaps = 11/194 (5%)
Frame = -3
Query: 554 NKMDEVCEWCIYGKMHRLPFSKIAWRAKAHSS*SMLI--FAALLKTPFIGNKRYFILFVD 381
N ++VCE C+ GK ++ F K + ++A S ++ +K +G YF+LF+D
Sbjct: 496 NHPNQVCEGCLLGKQFKMSFPKES-SSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFID 554
Query: 380 DYSRMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENG 201
D+SR +YFL +++E F +FKA EK+SG +K + + GG+F S F+ Y ++NG
Sbjct: 555 DFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNG 614
Query: 200 IR*QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYI 48
IR QL TV +P +NGVAE KNRTI+EMARSM+K K VY+
Sbjct: 615 IRRQL--------TVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYL 666
Query: 47 FHRSPTKAVRNKTP 6
+RSPTK+V KTP
Sbjct: 667 LNRSPTKSVSGKTP 680
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 132 bits (331), Expect = 9e-29
Identities = 78/193 (40%), Positives = 110/193 (56%), Gaps = 10/193 (5%)
Frame = -3
Query: 554 NKMDEVCEWCIYGKMHRLPFSK-IAWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDD 378
N ++VCE C+ GK ++ F K + RA+ +K +G YF+LF+DD
Sbjct: 496 NHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDD 555
Query: 377 YSRMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGI 198
+SR +YFL +++E F +FKA EK+SG +K + + GG+F S F+ Y ++NGI
Sbjct: 556 FSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGI 615
Query: 197 R*QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIF 45
R QL TV +P +NGVAE KNRTI+EMARSM+K K VY+
Sbjct: 616 RRQL--------TVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLL 667
Query: 44 HRSPTKAVRNKTP 6
+RSPTK+V KTP
Sbjct: 668 NRSPTKSVSGKTP 680
>gb|ABW74566.1| integrase [Boechera divaricarpa]
Length = 1165
Score = 131 bits (330), Expect = 1e-28
Identities = 78/192 (40%), Positives = 109/192 (56%), Gaps = 12/192 (6%)
Frame = -3
Query: 542 EVCEWCIYGKMHRLPFSKIAWRAKAHSS*SMLIFAAL---LKTPFIGNKRYFILFVDDYS 372
++CE C+YGK R F RA+ + ++ A L ++T +G +YF++ DDYS
Sbjct: 312 KLCEGCVYGKQSRRSFP--VGRARRATQYLEIVHADLCGPMQTASLGGSKYFLMLTDDYS 369
Query: 371 RMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR* 192
RM +YFL + E F FKAL EKQS + +KVL T GG+F S F + ++ GI
Sbjct: 370 RMSWVYFLKSKGEAFDMFKNFKALVEKQSEQQVKVLRTDRGGEFTSTKFNQFCEKEGIHH 429
Query: 191 QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVK---------GKLANTTVYIFHR 39
+L T +TP +NGVAE KN T+VEMARSM+K + T VY+ +
Sbjct: 430 EL--------TTAYTPEQNGVAERKNTTVVEMARSMLKERNLPNQFWAESVRTAVYLLNI 481
Query: 38 SPTKAVRNKTPF 3
SPTKAV N+TP+
Sbjct: 482 SPTKAVLNRTPY 493
>gb|ABR16307.1| unknown [Picea sitchensis]
Length = 407
Score = 131 bits (329), Expect = 2e-28
Identities = 78/188 (41%), Positives = 107/188 (56%), Gaps = 10/188 (5%)
Frame = -3
Query: 539 VCEWCIYGKMHRLPFSK-IAWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDDYSRMM 363
VCE C+ GK H F K +WRAK L+ P I RY + F+DDYSR +
Sbjct: 108 VCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRI 167
Query: 362 RIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*QLT 183
+YFL + E F EFKA EKQSG+++K+L T G ++++ F +Y K NG
Sbjct: 168 WVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNG------ 221
Query: 182 VRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIFHRSPT 30
I+ + TV +TP +NGVAE KNRT++EMAR M+ + NT YI +R+PT
Sbjct: 222 --IKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPT 279
Query: 29 KAVRNKTP 6
AV++KTP
Sbjct: 280 IAVKHKTP 287
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 130 bits (327), Expect = 3e-28
Identities = 77/193 (39%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Frame = -3
Query: 554 NKMDEVCEWCIYGKMHRLPFSK-IAWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDD 378
N ++VCE C+ GK ++ F K + RA+ +K +G YF+LF+DD
Sbjct: 496 NHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDD 555
Query: 377 YSRMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGI 198
+SR +YFL +++E F +FKA EK+SG +K + + GG+F S F+ Y ++NGI
Sbjct: 556 FSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGI 615
Query: 197 R*QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIF 45
R QL TV +P +NGV E KNRTI+EMARSM+K K VY+
Sbjct: 616 RRQL--------TVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLL 667
Query: 44 HRSPTKAVRNKTP 6
+RSPTK+V KTP
Sbjct: 668 NRSPTKSVSGKTP 680
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 130 bits (327), Expect = 3e-28
Identities = 77/193 (39%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Frame = -3
Query: 554 NKMDEVCEWCIYGKMHRLPFSK-IAWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDD 378
N ++VCE C+ GK ++ F K + RA+ +K +G YF+LF+DD
Sbjct: 496 NHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDD 555
Query: 377 YSRMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGI 198
+SR +YFL +++E F +FKA EK+SG +K + + GG+F S F+ Y ++NGI
Sbjct: 556 FSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGI 615
Query: 197 R*QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIF 45
R QL TV +P +NGV E KNRTI+EMARSM+K K VY+
Sbjct: 616 RRQL--------TVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLL 667
Query: 44 HRSPTKAVRNKTP 6
+RSPTK+V KTP
Sbjct: 668 NRSPTKSVSGKTP 680
>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1198
Score = 130 bits (326), Expect = 3e-28
Identities = 79/188 (42%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Frame = -3
Query: 536 CEWCIYGKMHRLPFSKI-AWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDDYSRMMR 360
CE C++GK R F AWRA A + T G YFI F+DDY+RM+
Sbjct: 443 CEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIW 502
Query: 359 IYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*QLTV 180
+YFL +++ +FKA+ E QS R +KVL + GG++IS F Y + GIR QLT
Sbjct: 503 VYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTA 562
Query: 179 RIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIFHRSPTK 27
Q +NGVAE KNRTI +MA SM++ K NT +YI +RSPTK
Sbjct: 563 GYSAQ--------QNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTK 614
Query: 26 AVRNKTPF 3
AV N+TPF
Sbjct: 615 AVPNRTPF 622
>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1142
Score = 130 bits (326), Expect = 3e-28
Identities = 79/188 (42%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Frame = -3
Query: 536 CEWCIYGKMHRLPFSKI-AWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDDYSRMMR 360
CE C++GK R F AWRA A + T G YFI F+DDY+RM+
Sbjct: 282 CEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIW 341
Query: 359 IYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*QLTV 180
+YFL +++ +FKA+ E QS R +KVL + GG++IS F Y + GIR QLT
Sbjct: 342 VYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTA 401
Query: 179 RIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIFHRSPTK 27
Q +NGVAE KNRTI +MA SM++ K NT +YI +RSPTK
Sbjct: 402 GYSTQ--------QNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTK 453
Query: 26 AVRNKTPF 3
AV N+TPF
Sbjct: 454 AVPNRTPF 461
>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
gi|31429795|gb|AAP51797.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1350
Score = 130 bits (326), Expect = 3e-28
Identities = 79/188 (42%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Frame = -3
Query: 536 CEWCIYGKMHRLPFSKI-AWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDDYSRMMR 360
CE C++GK R F AWRA A + T G YFI F+DDY+RM+
Sbjct: 415 CEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIW 474
Query: 359 IYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*QLTV 180
+YFL +++ +FKA+ E QS R +KVL + GG++IS F Y + GIR QLT
Sbjct: 475 VYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTA 534
Query: 179 RIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIFHRSPTK 27
Q +NGVAE KNRTI +MA SM++ K NT +YI +RSPTK
Sbjct: 535 GYSAQ--------QNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTK 586
Query: 26 AVRNKTPF 3
AV N+TPF
Sbjct: 587 AVPNRTPF 594
>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108708461|gb|ABF96256.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1167
Score = 130 bits (326), Expect = 3e-28
Identities = 79/188 (42%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Frame = -3
Query: 536 CEWCIYGKMHRLPFSKI-AWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDDYSRMMR 360
CE C++GK R F AWRA A + T G YFI F+DDY+RM+
Sbjct: 366 CEGCVFGKQIRASFPHSRAWRASAPLELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIW 425
Query: 359 IYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*QLTV 180
+YFL +++ +FKA+ E QS R +KVL + GG++IS F Y + GIR QLT
Sbjct: 426 VYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTA 485
Query: 179 RIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIFHRSPTK 27
Q +NGVAE KNRTI +MA SM++ K NT +YI +RSPTK
Sbjct: 486 GYSAQ--------QNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAIYILNRSPTK 537
Query: 26 AVRNKTPF 3
AV N+TPF
Sbjct: 538 AVPNRTPF 545
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1272
Score = 130 bits (326), Expect = 3e-28
Identities = 77/193 (39%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Frame = -3
Query: 554 NKMDEVCEWCIYGKMHRLPFSK-IAWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDD 378
N ++VCE C+ G ++ F K + RA+ +K +G YF+LF+DD
Sbjct: 496 NHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDD 555
Query: 377 YSRMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGI 198
+SR +YFL +++E F +FKA EK+SG +K + + GG+F S F+ Y ++NGI
Sbjct: 556 FSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGI 615
Query: 197 R*QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIF 45
R QL TV +P +NGVAE KNRTI+EMARSM+K K VY+
Sbjct: 616 RRQL--------TVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLL 667
Query: 44 HRSPTKAVRNKTP 6
+RSPTK+V KTP
Sbjct: 668 NRSPTKSVSGKTP 680
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 129 bits (323), Expect = 8e-28
Identities = 83/191 (43%), Positives = 108/191 (56%), Gaps = 13/191 (6%)
Frame = -3
Query: 536 CEWCIYGKMHRLPFSKI-AWRAKAHSS*SMLIFAALL-KTPFI--GNKRYFILFVDDYSR 369
CE C++GK R F AWRA A L+ A ++ K P I G YFI F+DDY+R
Sbjct: 492 CEGCVFGKQIRASFPHSGAWRASAPLE---LVHADIVGKVPTISEGGNWYFITFIDDYTR 548
Query: 368 MMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*Q 189
M+ +YFL +++ +FKA+ E QS R +KVL + G ++IS F Y + GIR Q
Sbjct: 549 MIWVYFLKEKSAALEIFKKFKAMVENQSNRKIKVLRSDQGREYISKEFEKYCENAGIRRQ 608
Query: 188 LTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIFHRS 36
LT Q +NGVAE KNRTI +MA SM++ K NT VYI +RS
Sbjct: 609 LTAGYSAQ--------QNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAVYILNRS 660
Query: 35 PTKAVRNKTPF 3
PTKAV N+TPF
Sbjct: 661 PTKAVTNRTPF 671
>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
Length = 1314
Score = 127 bits (320), Expect = 2e-27
Identities = 78/188 (41%), Positives = 102/188 (54%), Gaps = 10/188 (5%)
Frame = -3
Query: 536 CEWCIYGKMHRLPFSKI-AWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDDYSRMMR 360
CE C++GK + F AWRA A + T G YFI F+DDY+RM+
Sbjct: 499 CEGCVFGKQIQASFPHSGAWRASAPFELVHTDIVGKVPTMSEGGNWYFITFIDDYTRMIW 558
Query: 359 IYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*QLTV 180
+YFL +++ +FK + E QS R +KVL + GG++IS F Y + GIR QLT
Sbjct: 559 VYFLKEKSAALETFKKFKVMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTT 618
Query: 179 RIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK---------LANTTVYIFHRSPTK 27
Q +NGVAE KNRTI +MA SM++ K NT VYI +RSPTK
Sbjct: 619 GYSAQ--------QNGVAERKNRTINDMANSMLQDKGMPKSFWAEAVNTAVYILNRSPTK 670
Query: 26 AVRNKTPF 3
AV N+TPF
Sbjct: 671 AVPNRTPF 678
>pir||S00954 pol polyprotein - fruit fly (Drosophila melanogaster) transposon
1731 gi|8702|emb|CAA30503.1| unnamed protein product
[Drosophila melanogaster]
Length = 982
Score = 126 bits (316), Expect = 5e-27
Identities = 74/193 (38%), Positives = 111/193 (57%), Gaps = 11/193 (5%)
Frame = -3
Query: 551 KMDEVCEWCIYGKMHRLPFSKIAWRAKAHSS*SMLI--FAALLKTPFIGNKRYFILFVDD 378
K D VC+ C+ K+H PF K R++A M+ TP + +YF+ F+DD
Sbjct: 169 KPDAVCKTCMLAKIHVQPFPKTT-RSRAEELLDMIHSDLCGPFSTPSLAGSKYFLTFIDD 227
Query: 377 YSRMMRIYFLSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGI 198
SR + +YFL ++ E F +EFK L E+Q+GR +K + + GG+F++ F +Y K +GI
Sbjct: 228 KSRRIFVYFLRKKDEVFTKFVEFKKLVERQTGRKIKCIRSDNGGEFVNNVFDDYLKAHGI 287
Query: 197 R*QLTVRIR*QPTVRHTP*KNGVAENKNRTIVEMARSMVK---------GKLANTTVYIF 45
QL T+ HTP +NGVAE NRT+VEMAR M+ + NT VY+
Sbjct: 288 ARQL--------TIPHTPQQNGVAERANRTLVEMARCMLLQSELGEALWAEAINTAVYLR 339
Query: 44 HRSPTKAVRNKTP 6
+RS ++A+++KTP
Sbjct: 340 NRSTSRALQSKTP 352
>gb|ABR67407.1| integrase [Cucumis melo subsp. melo]
Length = 1281
Score = 126 bits (316), Expect = 5e-27
Identities = 80/185 (43%), Positives = 104/185 (56%), Gaps = 10/185 (5%)
Frame = -3
Query: 527 CIYGKMHRLPF-SKIAWRAKAHSS*SMLIFAALLKTPFIGNKRYFILFVDDYSRMMRIYF 351
CI K HR F + AWRA ++T G RYFI F+DD+SR + IYF
Sbjct: 467 CILAKHHRDSFPTGKAWRASKPLELIHTDLCGPMRTTTNGGNRYFITFIDDFSRKLWIYF 526
Query: 350 LSQQAETFYCLLEFKALAEKQSGRNLKVLWTYYGGQFISAPFMNYYKENGIR*QLTVRIR 171
L +++E C FKA E QSG +K L + GG++I F N++KE GI Q+T R+
Sbjct: 527 LKEKSEALVCFKSFKAFTENQSGYKIKTLRSDRGGEYI--VFGNFFKEQGIHHQMTARM- 583
Query: 170 *QPTVRHTP*KNGVAENKNRTIVEMARSMVKGK-LAN--------TTVYIFHRSPTKAVR 18
T +NGVAE KNRTI+EMARSM+K K L N TVYI +R+PTK+V
Sbjct: 584 -------TTQQNGVAERKNRTIMEMARSMLKAKNLPNEFWGDAVACTVYILNRAPTKSVP 636
Query: 17 NKTPF 3
TP+
Sbjct: 637 GMTPY 641