BLASTX nr result

ID: Rauwolfia21_contig00042098 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00042098
         (307 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004237422.1| PREDICTED: DNA-directed RNA polymerase I sub...    74   3e-11
ref|XP_003634465.1| PREDICTED: uncharacterized protein LOC100853...    61   1e-07
emb|CBI19898.3| unnamed protein product [Vitis vinifera]               61   1e-07
gb|EOY15075.1| TFIIB zinc-binding protein, putative [Theobroma c...    58   1e-06

>ref|XP_004237422.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
           [Solanum lycopersicum] gi|565396690|ref|XP_006363942.1|
           PREDICTED: DNA-directed RNA polymerase I subunit
           RPA12-like isoform X1 [Solanum tuberosum]
           gi|565396692|ref|XP_006363943.1| PREDICTED: DNA-directed
           RNA polymerase I subunit RPA12-like isoform X2 [Solanum
           tuberosum]
          Length = 121

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +1

Query: 190 MAYYRQRDFMFCELCGTMLIFKLPKYARCPLCKFKRR 300
           MAY RQRDFMFCE+CGTML F  PKYARCPLCKFK+R
Sbjct: 1   MAYCRQRDFMFCEMCGTMLAFDSPKYARCPLCKFKKR 37


>ref|XP_003634465.1| PREDICTED: uncharacterized protein LOC100853901 [Vitis vinifera]
          Length = 104

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 26/37 (70%), Positives = 28/37 (75%)
 Frame = +1

Query: 190 MAYYRQRDFMFCELCGTMLIFKLPKYARCPLCKFKRR 300
           MAY RQRDFMFC LCGTML     KYA CPLCK +R+
Sbjct: 1   MAYSRQRDFMFCNLCGTMLCMSSTKYAECPLCKSRRK 37


>emb|CBI19898.3| unnamed protein product [Vitis vinifera]
          Length = 126

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 26/37 (70%), Positives = 28/37 (75%)
 Frame = +1

Query: 190 MAYYRQRDFMFCELCGTMLIFKLPKYARCPLCKFKRR 300
           MAY RQRDFMFC LCGTML     KYA CPLCK +R+
Sbjct: 1   MAYSRQRDFMFCNLCGTMLCMSSTKYAECPLCKSRRK 37


>gb|EOY15075.1| TFIIB zinc-binding protein, putative [Theobroma cacao]
          Length = 119

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 24/35 (68%), Positives = 26/35 (74%)
 Frame = +1

Query: 190 MAYYRQRDFMFCELCGTMLIFKLPKYARCPLCKFK 294
           MAY + RDFMFC  CG+ML    PKYA CPLCKFK
Sbjct: 1   MAYSQARDFMFCSFCGSMLSLVSPKYAECPLCKFK 35


Top