BLASTX nr result

ID: Rauwolfia21_contig00040856 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00040856
         (296 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006364391.1| PREDICTED: DNA polymerase epsilon subunit 2-...    70   3e-10
ref|XP_004235385.1| PREDICTED: DNA polymerase epsilon subunit 2-...    70   3e-10
ref|XP_002267181.1| PREDICTED: DNA polymerase epsilon subunit 2-...    66   4e-09
emb|CBI15355.3| unnamed protein product [Vitis vinifera]               66   4e-09
emb|CAN73546.1| hypothetical protein VITISV_038180 [Vitis vinifera]    66   4e-09
gb|EPS66015.1| hypothetical protein M569_08761, partial [Genlise...    57   3e-06
gb|EMT04527.1| DNA polymerase epsilon subunit 2 [Aegilops tauschii]    56   6e-06
gb|EMS46400.1| DNA polymerase epsilon subunit 2 [Triticum urartu]      55   7e-06

>ref|XP_006364391.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Solanum
           tuberosum]
          Length = 529

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 44/90 (48%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
 Frame = +3

Query: 27  MSHVLRNKVQRKFRMRGYTLQVEALTEVLSFLNQF-SDDENQAXXXXXXXXXXXXXKSAI 203
           MS VLRNKVQRKF+MRGY+L+VEAL+EVLSFL+ F SD  + A             KS+I
Sbjct: 1   MSGVLRNKVQRKFKMRGYSLKVEALSEVLSFLSHFPSDALDDALELLLDELHHLSLKSSI 60

Query: 204 LDREXXXXXXXXXXXXXXXGEENPGASIGS 293
           LDRE                EENP +S  S
Sbjct: 61  LDREPVHKVVSLLLEADAAVEENPSSSSSS 90


>ref|XP_004235385.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Solanum
           lycopersicum]
          Length = 529

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 44/90 (48%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
 Frame = +3

Query: 27  MSHVLRNKVQRKFRMRGYTLQVEALTEVLSFLNQF-SDDENQAXXXXXXXXXXXXXKSAI 203
           MS VLRNKVQRKF+MRGY+L+VEAL+EVLSFL+ F SD  + A             KS+I
Sbjct: 1   MSGVLRNKVQRKFKMRGYSLKVEALSEVLSFLSHFPSDAFDDALELLLDELHHLSLKSSI 60

Query: 204 LDREXXXXXXXXXXXXXXXGEENPGASIGS 293
           LDRE                EENP +S  S
Sbjct: 61  LDREPVHKVVSLLLEADAAVEENPSSSSSS 90


>ref|XP_002267181.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Vitis vinifera]
          Length = 527

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 37/85 (43%), Positives = 46/85 (54%)
 Frame = +3

Query: 27  MSHVLRNKVQRKFRMRGYTLQVEALTEVLSFLNQFSDDENQAXXXXXXXXXXXXXKSAIL 206
           M    R KVQRKF++RGYTL+VEAL E+LSFL+ F D E++A             KS+IL
Sbjct: 1   MGAATRKKVQRKFKIRGYTLKVEALDEILSFLSHFQDAEDEAIDLLLDELENESLKSSIL 60

Query: 207 DREXXXXXXXXXXXXXXXGEENPGA 281
           D+E                EE PGA
Sbjct: 61  DKESVHRVVSLLLEAEAAVEETPGA 85


>emb|CBI15355.3| unnamed protein product [Vitis vinifera]
          Length = 527

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 37/85 (43%), Positives = 46/85 (54%)
 Frame = +3

Query: 27  MSHVLRNKVQRKFRMRGYTLQVEALTEVLSFLNQFSDDENQAXXXXXXXXXXXXXKSAIL 206
           M    R KVQRKF++RGYTL+VEAL E+LSFL+ F D E++A             KS+IL
Sbjct: 1   MGAATRKKVQRKFKIRGYTLKVEALDEILSFLSHFQDAEDEAIDLLLDELENESLKSSIL 60

Query: 207 DREXXXXXXXXXXXXXXXGEENPGA 281
           D+E                EE PGA
Sbjct: 61  DKESVHRVVSLLLEAEAAVEETPGA 85


>emb|CAN73546.1| hypothetical protein VITISV_038180 [Vitis vinifera]
          Length = 539

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 37/85 (43%), Positives = 46/85 (54%)
 Frame = +3

Query: 27  MSHVLRNKVQRKFRMRGYTLQVEALTEVLSFLNQFSDDENQAXXXXXXXXXXXXXKSAIL 206
           M    R KVQRKF++RGYTL+VEAL E+LSFL+ F D E++A             KS+IL
Sbjct: 1   MGAATRKKVQRKFKIRGYTLKVEALDEILSFLSHFQDAEDEAIDLLLDELENESLKSSIL 60

Query: 207 DREXXXXXXXXXXXXXXXGEENPGA 281
           D+E                EE PGA
Sbjct: 61  DKESVHRVVSLLLEAEAAVEETPGA 85


>gb|EPS66015.1| hypothetical protein M569_08761, partial [Genlisea aurea]
          Length = 233

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 28/58 (48%), Positives = 39/58 (67%)
 Frame = +3

Query: 42  RNKVQRKFRMRGYTLQVEALTEVLSFLNQFSDDENQAXXXXXXXXXXXXXKSAILDRE 215
           RNKVQRKF+MRGYTL++EAL+EV  F+++F +   +A             KS+ILD+E
Sbjct: 1   RNKVQRKFKMRGYTLKIEALSEVWGFISRFPEAIEEALDLLLDELHESSLKSSILDKE 58


>gb|EMT04527.1| DNA polymerase epsilon subunit 2 [Aegilops tauschii]
          Length = 462

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = +3

Query: 30  SHVLRNKVQRKFRMRGYTLQVEALTEVLSFLNQFSDDENQAXXXXXXXXXXXXXKSAILD 209
           S  +R K+QRKFR+RG+TL+V+AL E  +FL +F D E++A             KS+ILD
Sbjct: 58  SAAMRKKLQRKFRLRGFTLKVDALEEAAAFLARFPDAEDEALDLLLDELDKEPLKSSILD 117

Query: 210 RE 215
           R+
Sbjct: 118 RD 119


>gb|EMS46400.1| DNA polymerase epsilon subunit 2 [Triticum urartu]
          Length = 409

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = +3

Query: 30  SHVLRNKVQRKFRMRGYTLQVEALTEVLSFLNQFSDDENQAXXXXXXXXXXXXXKSAILD 209
           S  +R K+QRKFR+RG+TL+V+AL E  +FL +F D E++A             KS+ILD
Sbjct: 5   SVAMRKKLQRKFRLRGFTLKVDALEEAAAFLARFPDAEDEALDLLLDELDKEPLKSSILD 64

Query: 210 RE 215
           R+
Sbjct: 65  RD 66


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