BLASTX nr result
ID: Rauwolfia21_contig00040630
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00040630
(780 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD93747.1| RNA polymerase beta chain [Liriodendron chinense] 56 9e-07
gb|ABD93852.1| RNA polymerase beta chain [Degeneria vitiensis] 56 9e-07
ref|YP_008592629.1| RNA polymerase beta'' subunit (chloroplast) ... 57 1e-06
gb|AEP25229.1| RNA polymerase C2 [Simmondsia chinensis] 57 1e-06
gb|ABD93767.1| RNA polymerase beta chain [Berberis bealei] 57 1e-06
gb|ABD93803.1| RNA polymerase beta chain [Simmondsia chinensis] 57 1e-06
ref|YP_740192.1| RNA polymerase beta' subunit [Liriodendron tuli... 55 2e-06
gb|AEZ01417.1| RNA polymerase beta' subunit (chloroplast) [Japon... 57 2e-06
gb|AHH24323.1| RNA polymerase beta' subunit (chloroplast) [Japon... 57 2e-06
gb|ABV65754.1| RNA polymerase beta'' subunit, partial (chloropla... 55 2e-06
gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloropla... 55 2e-06
gb|ABD93849.1| RNA polymerase beta chain [Chloranthus multistachys] 57 2e-06
gb|ABD93823.1| RNA polymerase beta chain [Galbulimima belgraveana] 55 2e-06
ref|YP_007890363.1| RNA polymerase beta' subunit (chloroplast) [... 56 3e-06
gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira] 56 3e-06
gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liqu... 55 3e-06
gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Stap... 54 3e-06
ref|YP_001294088.1| RNA polymerase beta' subunit [Chloranthus sp... 57 3e-06
gb|ABD93740.1| RNA polymerase beta chain [Hedyosmum arborescens] 57 3e-06
gb|ABD93799.1| RNA polymerase beta chain [Staphylea trifolia] 54 3e-06
>gb|ABD93747.1| RNA polymerase beta chain [Liriodendron chinense]
Length = 839
Score = 56.2 bits (134), Expect(2) = 9e-07
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G + K SKK ++ QRI
Sbjct: 246 KKKIELKIFSGDIHFPGETDKISRHSGILIPP---GTGKKNSKESKKLKNWIYVQRI 299
Score = 23.5 bits (49), Expect(2) = 9e-07
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +KK
Sbjct: 236 VGGLVRVERKKKK 248
>gb|ABD93852.1| RNA polymerase beta chain [Degeneria vitiensis]
Length = 765
Score = 56.2 bits (134), Expect(2) = 9e-07
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G + K SKK ++ QRI
Sbjct: 213 KKKIELKIFSGDIHFPGETDKISRHSGILIPP---GTGKKNAKESKKLKNWIYVQRI 266
Score = 23.5 bits (49), Expect(2) = 9e-07
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +KK
Sbjct: 203 VGGLVRVERKKKK 215
>ref|YP_008592629.1| RNA polymerase beta'' subunit (chloroplast) [Berberis bealei]
gi|536462670|gb|AGU37035.1| RNA polymerase beta''
subunit (chloroplast) [Berberis bealei]
Length = 1380
Score = 57.0 bits (136), Expect(2) = 1e-06
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G + K SKK ++ QRI
Sbjct: 707 KKKIELKIFSGDIHFPGETDKISWHSGILIPP---GTGKKTSKESKKLKNWIYVQRI 760
Score = 22.3 bits (46), Expect(2) = 1e-06
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVE+ +KK
Sbjct: 697 VGGLVRVEKKKKK 709
>gb|AEP25229.1| RNA polymerase C2 [Simmondsia chinensis]
Length = 889
Score = 57.0 bits (136), Expect(2) = 1e-06
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G PK SK +++ QRI
Sbjct: 665 KKKIELKIFSGDIHFPGETDKISRHSGILIPP---GRGKPNPKESKNSKNWIYVQRI 718
Score = 22.3 bits (46), Expect(2) = 1e-06
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGG++RVER +KK
Sbjct: 655 VGGVVRVERKKKK 667
>gb|ABD93767.1| RNA polymerase beta chain [Berberis bealei]
Length = 833
Score = 57.0 bits (136), Expect(2) = 1e-06
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G + K SKK ++ QRI
Sbjct: 235 KKKIELKIFSGDIHFPGETDKISWHSGILIPP---GTGKKTSKESKKLKNWIYVQRI 288
Score = 22.3 bits (46), Expect(2) = 1e-06
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVE+ +KK
Sbjct: 225 VGGLVRVEKKKKK 237
>gb|ABD93803.1| RNA polymerase beta chain [Simmondsia chinensis]
Length = 800
Score = 57.0 bits (136), Expect(2) = 1e-06
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G PK SK +++ QRI
Sbjct: 203 KKKIELKIFSGDIHFPGETDKISRHSGILIPP---GRGKPNPKESKNSKNWIYVQRI 256
Score = 22.3 bits (46), Expect(2) = 1e-06
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGG++RVER +KK
Sbjct: 193 VGGVVRVERKKKK 205
>ref|YP_740192.1| RNA polymerase beta' subunit [Liriodendron tulipifera]
gi|122239950|sp|Q0G9M9.1|RPOC2_LIRTU RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|113200984|gb|ABI32499.1| RNA polymerase beta'
subunit [Liriodendron tulipifera]
Length = 1382
Score = 55.5 bits (132), Expect(2) = 2e-06
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G + K SKK ++ QRI
Sbjct: 714 KKKIELKIFSGDIHFPGETDKISRHSGILIPP---GTGKKNSKESKKWKNWIYVQRI 767
Score = 23.5 bits (49), Expect(2) = 2e-06
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +KK
Sbjct: 704 VGGLVRVERKKKK 716
>gb|AEZ01417.1| RNA polymerase beta' subunit (chloroplast) [Japonolirion osense]
Length = 1378
Score = 57.4 bits (137), Expect(2) = 2e-06
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KK +ELKI S DIHFPGE +KI HS IL PP G G + PK SKK ++ QRI
Sbjct: 713 KKSIELKIFSGDIHFPGETDKISRHSGILIPP---GTGKKNPKESKKLKNGIYVQRI 766
Score = 21.6 bits (44), Expect(2) = 2e-06
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 461 VGGLLRVERGEK 426
VGGL+RVER +K
Sbjct: 703 VGGLVRVERKKK 714
>gb|AHH24323.1| RNA polymerase beta' subunit (chloroplast) [Japonolirion osense]
Length = 1374
Score = 57.4 bits (137), Expect(2) = 2e-06
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KK +ELKI S DIHFPGE +KI HS IL PP G G + PK SKK ++ QRI
Sbjct: 709 KKSIELKIFSGDIHFPGETDKISRHSGILIPP---GTGKKNPKESKKLKNGIYVQRI 762
Score = 21.6 bits (44), Expect(2) = 2e-06
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 461 VGGLLRVERGEK 426
VGGL+RVER +K
Sbjct: 699 VGGLVRVERKKK 710
>gb|ABV65754.1| RNA polymerase beta'' subunit, partial (chloroplast) [Lythrum
flagellare]
Length = 1283
Score = 55.5 bits (132), Expect(2) = 2e-06
Identities = 32/57 (56%), Positives = 36/57 (63%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G K SKK ++ QRI
Sbjct: 682 KKKIELKIFSGDIHFPGEADKISRHSGILIPP---GTGKTNSKESKKLKNWIYVQRI 735
Score = 23.5 bits (49), Expect(2) = 2e-06
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +KK
Sbjct: 672 VGGLVRVERKKKK 684
>gb|ABV65776.1| RNA polymerase beta'' subunit, partial (chloroplast) [Stachyurus
praecox]
Length = 1280
Score = 55.5 bits (132), Expect(2) = 2e-06
Identities = 32/57 (56%), Positives = 36/57 (63%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G K SKK ++ QRI
Sbjct: 684 KKKIELKIFSGDIHFPGETDKISRHSGILIPP---GTGQTNSKESKKLKNWIYVQRI 737
Score = 23.5 bits (49), Expect(2) = 2e-06
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +KK
Sbjct: 674 VGGLVRVERKKKK 686
>gb|ABD93849.1| RNA polymerase beta chain [Chloranthus multistachys]
Length = 827
Score = 56.6 bits (135), Expect(2) = 2e-06
Identities = 29/47 (61%), Positives = 33/47 (70%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKK 290
KK++ELKI S DIHFPGE +KI HS IL PP G G + PK SKK
Sbjct: 242 KKRIELKIFSGDIHFPGETDKISRHSGILIPP---GTGKKNPKESKK 285
Score = 22.3 bits (46), Expect(2) = 2e-06
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +K+
Sbjct: 232 VGGLVRVERKKKR 244
>gb|ABD93823.1| RNA polymerase beta chain [Galbulimima belgraveana]
Length = 811
Score = 55.5 bits (132), Expect(2) = 2e-06
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G + K SKK ++ QRI
Sbjct: 226 KKKIELKIFSGDIHFPGETDKISRHSGILIPP---GTGKKNSKESKKWKNWIYVQRI 279
Score = 23.5 bits (49), Expect(2) = 2e-06
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +KK
Sbjct: 216 VGGLVRVERKKKK 228
>ref|YP_007890363.1| RNA polymerase beta' subunit (chloroplast) [Ardisia polysticta]
gi|456367960|gb|AGG36874.1| RNA polymerase beta' subunit
(chloroplast) [Ardisia polysticta]
Length = 1394
Score = 55.8 bits (133), Expect(2) = 3e-06
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KK++ELKI S DIHFPGE +KI HS IL PP G G + KASKK ++ QRI
Sbjct: 718 KKRIELKIFSGDIHFPGETDKISRHSGILIPP---GIGKKNDKASKKWKNWIYVQRI 771
Score = 22.3 bits (46), Expect(2) = 3e-06
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +K+
Sbjct: 708 VGGLVRVERKKKR 720
>gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]
Length = 774
Score = 55.8 bits (133), Expect(2) = 3e-06
Identities = 32/57 (56%), Positives = 37/57 (64%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G + K SKK ++ QRI
Sbjct: 180 KKKIELKIFSGDIHFPGETDKISWHSGILIPP---GTGKKNSKESKKFKNWIYVQRI 233
Score = 22.3 bits (46), Expect(2) = 3e-06
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVE+ +KK
Sbjct: 170 VGGLVRVEKKKKK 182
>gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liquidambar
styraciflua]
Length = 1390
Score = 55.5 bits (132), Expect(2) = 3e-06
Identities = 34/65 (52%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRII-- 257
KK++ELKI S DIHFPGE KI HS IL PP G G K SKK ++ QRI
Sbjct: 717 KKRIELKIFSGDIHFPGETNKIARHSGILIPP---GTGKTNSKESKKLKNWIYVQRITPT 773
Query: 256 -KEHF 245
K+HF
Sbjct: 774 KKKHF 778
Score = 22.3 bits (46), Expect(2) = 3e-06
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +K+
Sbjct: 707 VGGLVRVERKKKR 719
>gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Staphylea colchica]
Length = 1390
Score = 54.3 bits (129), Expect(2) = 3e-06
Identities = 31/57 (54%), Positives = 36/57 (63%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G K SK+ ++ QRI
Sbjct: 715 KKKIELKIFSGDIHFPGETDKISRHSGILIPP---GTGQTNSKESKRLKNWIYVQRI 768
Score = 23.5 bits (49), Expect(2) = 3e-06
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +KK
Sbjct: 705 VGGLVRVERKKKK 717
>ref|YP_001294088.1| RNA polymerase beta' subunit [Chloranthus spicatus]
gi|212277052|sp|A6MMB2.1|RPOC2_CHLSC RecName:
Full=DNA-directed RNA polymerase subunit beta'';
AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta''; Short=RNA polymerase subunit
beta'' gi|146744178|gb|ABQ43250.1| RNA polymerase beta'
subunit [Chloranthus spicatus]
Length = 1389
Score = 56.6 bits (135), Expect(2) = 3e-06
Identities = 29/47 (61%), Positives = 33/47 (70%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKK 290
KK++ELKI S DIHFPGE +KI HS IL PP G G + PK SKK
Sbjct: 712 KKRIELKIFSGDIHFPGETDKISRHSGILIPP---GTGKKNPKESKK 755
Score = 21.2 bits (43), Expect(2) = 3e-06
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVE+ +K+
Sbjct: 702 VGGLVRVEKKKKR 714
>gb|ABD93740.1| RNA polymerase beta chain [Hedyosmum arborescens]
Length = 869
Score = 56.6 bits (135), Expect(2) = 3e-06
Identities = 29/47 (61%), Positives = 33/47 (70%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKK 290
KK++ELKI S DIHFPGE +KI HS IL PP G G + PK SKK
Sbjct: 269 KKRIELKIFSGDIHFPGETDKISRHSGILIPP---GTGKKNPKESKK 312
Score = 21.2 bits (43), Expect(2) = 3e-06
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVE+ +K+
Sbjct: 259 VGGLVRVEKKKKR 271
>gb|ABD93799.1| RNA polymerase beta chain [Staphylea trifolia]
Length = 866
Score = 54.3 bits (129), Expect(2) = 3e-06
Identities = 31/57 (54%), Positives = 36/57 (63%)
Frame = -3
Query: 430 KKKVELKILSEDIHFPGEIEKIFLHSSILTPPRRGGWGNEIPKASKKAEDVDTRQRI 260
KKK+ELKI S DIHFPGE +KI HS IL PP G G K SK+ ++ QRI
Sbjct: 266 KKKIELKIFSGDIHFPGETDKISRHSGILIPP---GTGQTNSKESKRLKNWIYVQRI 319
Score = 23.5 bits (49), Expect(2) = 3e-06
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 461 VGGLLRVERGEKK 423
VGGL+RVER +KK
Sbjct: 256 VGGLVRVERKKKK 268