BLASTX nr result

ID: Rauwolfia21_contig00037229 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00037229
         (372 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC62795.1| contains similarity to retroviral aspartyl protea...    59   7e-07
gb|AAF69161.1|AC007915_13 F27F5.19 [Arabidopsis thaliana]              56   6e-06

>gb|AAC62795.1| contains similarity to retroviral aspartyl proteases (Pfam:
           rvp.hmm, score: 11.80) [Arabidopsis thaliana]
          Length = 1244

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = -2

Query: 338 CSFCGQLGHTVDRCYKKHGYPPNFKGKKQFNGTANQALA 222
           CSFC ++GH  ++CYKKHGYPP FKGK    GT  Q +A
Sbjct: 293 CSFCNKVGHIAEKCYKKHGYPPGFKGKLPEKGTKPQPVA 331


>gb|AAF69161.1|AC007915_13 F27F5.19 [Arabidopsis thaliana]
          Length = 1309

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = -2

Query: 359 GGSRVYKCSFCGQLGHTVDRCYKKHGYPPNFK-GKKQFNGTANQA 228
           G  +  KCSFC +LGH VD+CYKKHGYPP  K  K Q  G+ N A
Sbjct: 306 GSYKKPKCSFCNKLGHLVDKCYKKHGYPPGSKWTKAQTIGSTNLA 350


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