BLASTX nr result
ID: Rauwolfia21_contig00036897
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00036897
(275 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 79 6e-13
ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A... 75 1e-11
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 74 2e-11
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 72 6e-11
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 72 1e-10
dbj|BAM28751.1| reverse transcriptase-like protein, partial [Cam... 71 2e-10
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 70 4e-10
emb|CAN80925.1| hypothetical protein VITISV_042796 [Vitis vinifera] 68 1e-09
emb|CAN82440.1| hypothetical protein VITISV_006122 [Vitis vinifera] 68 1e-09
emb|CAN65298.1| hypothetical protein VITISV_008130 [Vitis vinifera] 67 2e-09
emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera] 67 2e-09
ref|XP_002282016.2| PREDICTED: uncharacterized protein LOC100262... 67 2e-09
emb|CAN69754.1| hypothetical protein VITISV_024938 [Vitis vinifera] 67 2e-09
emb|CAN68348.1| hypothetical protein VITISV_032025 [Vitis vinifera] 67 2e-09
emb|CAN66945.1| hypothetical protein VITISV_020092 [Vitis vinifera] 67 2e-09
emb|CAN77005.1| hypothetical protein VITISV_027306 [Vitis vinifera] 67 3e-09
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 67 3e-09
emb|CAN77770.1| hypothetical protein VITISV_044337 [Vitis vinifera] 66 4e-09
dbj|BAM28750.1| reverse transcriptase-like protein, partial [Cam... 66 5e-09
ref|XP_004292011.1| PREDICTED: uncharacterized protein LOC101291... 65 7e-09
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 79.0 bits (193), Expect = 6e-13
Identities = 34/89 (38%), Positives = 54/89 (60%)
Frame = -1
Query: 275 VTSIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXX 96
VT+ IP YAM T +LP ++ E ++K NINFLWG+ ++K+H ++ E +C+ K
Sbjct: 347 VTASIPIYAMQTAKLPLSLCESIDKANINFLWGDSNEKKKIHLVNWESVCKPKHRGGLGL 406
Query: 95 XXXKHIN*ALLAKLCWRLLRNPNQLWMQV 9
+N A+LAK WR+ +N + LW +
Sbjct: 407 KKTADMNQAMLAKASWRIFQNDHGLWADI 435
>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 407
Score = 74.7 bits (182), Expect = 1e-11
Identities = 33/86 (38%), Positives = 54/86 (62%)
Frame = -1
Query: 275 VTSIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXX 96
V+S IP YAM T + P ++ E L+KLN NFLWG+ E ++K+H ++ +++C+ K
Sbjct: 59 VSSAIPNYAMQTAKFPVSLCENLDKLNRNFLWGDTEIKKKVHLVNWDVVCQPKQLGDIGI 118
Query: 95 XXXKHIN*ALLAKLCWRLLRNPNQLW 18
+ +N A+LAK+ WR+ + LW
Sbjct: 119 KKTEDMNQAMLAKISWRMFQCDKGLW 144
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/90 (36%), Positives = 50/90 (55%)
Frame = -1
Query: 275 VTSIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXX 96
V S IPYY M ++P I +E+EK+ F+WG+ RK H +S ++ C K
Sbjct: 226 VISSIPYYHMQYAKIPKTICDEIEKIQRGFVWGDSNQGRKAHLVSWDVCCLPKMNGGLGF 285
Query: 95 XXXKHIN*ALLAKLCWRLLRNPNQLWMQVL 6
H+N A L K+ W L++ P++LW +VL
Sbjct: 286 KRPHHMNEAFLMKMLWNLIKQPDKLWCRVL 315
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 72.4 bits (176), Expect = 6e-11
Identities = 35/86 (40%), Positives = 54/86 (62%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP + M ++ LP +++E+L+K++ NFLWG +RK H +S + +CR K+ K
Sbjct: 598 IPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASK 657
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVL 6
+N ALLAK+ WRLL + LW +VL
Sbjct: 658 DMNRALLAKVGWRLLNDKVSLWARVL 683
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 71.6 bits (174), Expect = 1e-10
Identities = 32/88 (36%), Positives = 52/88 (59%)
Frame = -1
Query: 269 SIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXX 90
S IPYY M + +LP + +++++ + +FLWGE E +R++H ++ E I + K
Sbjct: 804 SSIPYYTMQSTKLPRSTCDDIDRKSRSFLWGEQEGKRRVHLVAWENISKSKKEGGLGIRS 863
Query: 89 XKHIN*ALLAKLCWRLLRNPNQLWMQVL 6
+ N A L KL WRLL P+ LW ++L
Sbjct: 864 MRQANSAFLVKLGWRLLAEPSSLWSRIL 891
>dbj|BAM28751.1| reverse transcriptase-like protein, partial [Camellia sinensis var.
sinensis]
Length = 255
Score = 70.9 bits (172), Expect = 2e-10
Identities = 35/89 (39%), Positives = 47/89 (52%)
Frame = -1
Query: 275 VTSIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXX 96
V IP Y M RLP+ + E+E + NF WG+ E RK+H S + +C+ K
Sbjct: 45 VAQAIPTYIMSCFRLPDGVCXEIESMVCNFWWGQKEETRKIHWTSWKQLCKSKLRGGMGF 104
Query: 95 XXXKHIN*ALLAKLCWRLLRNPNQLWMQV 9
+H N ALLAK CWRL + P L +V
Sbjct: 105 RCLQHFNSALLAKQCWRLXQRPQSLVARV 133
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 69.7 bits (169), Expect = 4e-10
Identities = 32/90 (35%), Positives = 56/90 (62%)
Frame = -1
Query: 275 VTSIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXX 96
V S IP + M T+ LP + ++ L+K++ +FLWG QRK H IS + +C+ +S
Sbjct: 321 VLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGI 380
Query: 95 XXXKHIN*ALLAKLCWRLLRNPNQLWMQVL 6
+ +N ALL+K+ WRL+++ + LW +++
Sbjct: 381 RKAQDMNKALLSKVGWRLIQDYHSLWARIM 410
>emb|CAN80925.1| hypothetical protein VITISV_042796 [Vitis vinifera]
Length = 1045
Score = 68.2 bits (165), Expect = 1e-09
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP Y M R+P ++ LEKL NFLWG K H + E++C +K
Sbjct: 775 IPLYQMSLFRMPKSVARRLEKLQRNFLWGXTNGGNKAHLVKWEVVCADKEKGGLGLRKLV 834
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVL 6
+N ALL K WR R +LW +VL
Sbjct: 835 WLNKALLGKWIWRFARTKEELWKKVL 860
>emb|CAN82440.1| hypothetical protein VITISV_006122 [Vitis vinifera]
Length = 1030
Score = 68.2 bits (165), Expect = 1e-09
Identities = 33/86 (38%), Positives = 43/86 (50%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP Y M R+P ++ LEKL NFLWG K+H I E++C +K
Sbjct: 622 IPLYQMSLFRMPKSVARRLEKLQRNFLWGGANGGNKVHLIKWEVVCADKEKGGLGLRKLI 681
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVL 6
+N ALL K WR R +LW +VL
Sbjct: 682 WLNKALLGKWIWRFARAKEELWKKVL 707
>emb|CAN65298.1| hypothetical protein VITISV_008130 [Vitis vinifera]
Length = 1936
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/86 (38%), Positives = 42/86 (48%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP Y M R+P ++ LEKL NFLWG K H I E++C +K
Sbjct: 1516 IPLYQMSLFRMPKSVARRLEKLQRNFLWGGANGGNKAHLIKWEVVCTDKKKGGLGLRKLI 1575
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVL 6
+N ALL K WR R +LW +VL
Sbjct: 1576 WLNKALLGKWIWRFARAKEELWKKVL 1601
>emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/86 (38%), Positives = 42/86 (48%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP Y M R+P ++ LEKL NFLWG K H I E++C +K
Sbjct: 1421 IPLYQMSLFRMPKSVARRLEKLQRNFLWGGANGGNKAHLIKWEVVCTDKKKGGLGLRKLI 1480
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVL 6
+N ALL K WR R +LW +VL
Sbjct: 1481 WLNKALLGKWIWRFARAKEELWKKVL 1506
>ref|XP_002282016.2| PREDICTED: uncharacterized protein LOC100262933 [Vitis vinifera]
Length = 2871
Score = 67.0 bits (162), Expect = 2e-09
Identities = 33/87 (37%), Positives = 46/87 (52%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP Y M R+P +V+ LEKL +FLWG +RK+H + E++C +K
Sbjct: 418 IPIYQMSLFRMPKIVVKRLEKLQRDFLWGGGNMERKVHLVKWEIVCGDKGRGGLGLRKLG 477
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVLL 3
+N ALL K WR + LW QV+L
Sbjct: 478 LLNKALLGKWIWRFACDRENLWKQVIL 504
>emb|CAN69754.1| hypothetical protein VITISV_024938 [Vitis vinifera]
Length = 971
Score = 67.0 bits (162), Expect = 2e-09
Identities = 34/87 (39%), Positives = 44/87 (50%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP Y M R+PN +V LEKL +FLWG +RK H + E++C +K
Sbjct: 633 IPIYQMSLFRMPNIVVRRLEKLQRDFLWGGGNMERKAHLVKWEIVCGDKGRGGLGLRRLG 692
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVLL 3
+N ALL K WR LW QV+L
Sbjct: 693 LMNKALLGKWIWRYACERENLWKQVIL 719
>emb|CAN68348.1| hypothetical protein VITISV_032025 [Vitis vinifera]
Length = 1670
Score = 67.0 bits (162), Expect = 2e-09
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP Y M R+P ++ LEKL NFLWG K H + E++C +K
Sbjct: 1353 IPLYQMSLFRMPKSVARRLEKLQRNFLWGGANGGNKAHLVKWEVVCADKEKGGLGLRKLI 1412
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVL 6
+N ALL K WR R +LW +VL
Sbjct: 1413 WLNKALLGKWIWRFARAKEELWKKVL 1438
>emb|CAN66945.1| hypothetical protein VITISV_020092 [Vitis vinifera]
Length = 894
Score = 67.0 bits (162), Expect = 2e-09
Identities = 34/87 (39%), Positives = 44/87 (50%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP Y M R+PN +V LEKL +FLWG +RK H + E++C +K
Sbjct: 721 IPIYQMSLFRMPNIVVRRLEKLQRDFLWGGGNMERKAHLVKWEIVCGDKGRGGLGLRRLG 780
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVLL 3
+N ALL K WR LW QV+L
Sbjct: 781 LMNKALLGKWIWRYACERENLWKQVIL 807
>emb|CAN77005.1| hypothetical protein VITISV_027306 [Vitis vinifera]
Length = 549
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/86 (38%), Positives = 41/86 (47%)
Frame = -1
Query: 263 IPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXXXXXK 84
IP Y M R+P + LEKL NFLWG K H I E++C +K
Sbjct: 361 IPLYQMSLFRMPKLVARRLEKLQRNFLWGGANGGNKAHLIKWEVVCADKEKGGLGLRKLI 420
Query: 83 HIN*ALLAKLCWRLLRNPNQLWMQVL 6
+N ALL K WR R +LW +VL
Sbjct: 421 WLNKALLGKWIWRFARAKEELWKKVL 446
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 66.6 bits (161), Expect = 3e-09
Identities = 32/90 (35%), Positives = 50/90 (55%)
Frame = -1
Query: 275 VTSIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXX 96
V S +P ++M T+ LP +I+ L++L+ FLWG ++K H + +C K
Sbjct: 44 VLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGV 103
Query: 95 XXXKHIN*ALLAKLCWRLLRNPNQLWMQVL 6
K +N AL++K+ WRLL+ N LW VL
Sbjct: 104 RAAKSMNRALISKVGWRLLQEKNSLWTLVL 133
>emb|CAN77770.1| hypothetical protein VITISV_044337 [Vitis vinifera]
Length = 729
Score = 66.2 bits (160), Expect = 4e-09
Identities = 30/91 (32%), Positives = 49/91 (53%)
Frame = -1
Query: 275 VTSIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXX 96
+ + +P Y M R+P + LEK+ +FLWGE +RK H ++ E++C +K+
Sbjct: 612 ILTSMPIYQMSLFRMPKTVARRLEKVQRDFLWGEGNLERKAHLVNWEVVCADKNKGGLGL 671
Query: 95 XXXKHIN*ALLAKLCWRLLRNPNQLWMQVLL 3
+N ALL K WR + + LW QV++
Sbjct: 672 RKLALLNKALLGKWIWRFAFDKDNLWKQVIM 702
>dbj|BAM28750.1| reverse transcriptase-like protein, partial [Camellia sinensis var.
sinensis]
Length = 255
Score = 65.9 bits (159), Expect = 5e-09
Identities = 33/89 (37%), Positives = 46/89 (51%)
Frame = -1
Query: 275 VTSIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXX 96
V IP Y M RLP+ + E+E + NF W + E RK+H S + +C+ K
Sbjct: 45 VAQAIPTYIMSCFRLPDGVCHEIESMVCNFWWXQKEETRKIHWTSWKQLCKSKLQGGMGF 104
Query: 95 XXXKHIN*ALLAKLCWRLLRNPNQLWMQV 9
+ N ALLAK CWRL++ P L +V
Sbjct: 105 RCLQXFNSALLAKQCWRLVQRPQSLVARV 133
>ref|XP_004292011.1| PREDICTED: uncharacterized protein LOC101291306 [Fragaria vesca
subsp. vesca]
Length = 948
Score = 65.5 bits (158), Expect = 7e-09
Identities = 33/90 (36%), Positives = 45/90 (50%)
Frame = -1
Query: 275 VTSIIPYYAMHTVRLPNAIVEELEKLNINFLWGEVENQRKMHTIS*EMICREKSXXXXXX 96
V +IP + M LP + ++ NF WG+ E+ K+H I E + R K+
Sbjct: 449 VAMVIPSFPMSCFLLPKYLGNQINSAISNFWWGKSESINKIHWICWESLGRAKAVGGLGF 508
Query: 95 XXXKHIN*ALLAKLCWRLLRNPNQLWMQVL 6
H N ALLAK CWR+L PN +W VL
Sbjct: 509 KDLHHFNLALLAKQCWRILSQPNSMWAMVL 538