BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00036800
         (293 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   159   4e-37
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc...    87   2e-15
emb|CAN68884.1| hypothetical protein VITISV_039230 [Vitis vinifera]    87   2e-15
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    84   2e-14
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]         84   3e-14
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]                84   3e-14
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                 84   3e-14
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...    83   4e-14
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...    83   4e-14
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...    83   4e-14
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    83   4e-14
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]      82   6e-14
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...    82   6e-14
emb|CAN75282.1| hypothetical protein VITISV_007973 [Vitis vinifera]    82   7e-14
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...    82   7e-14
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...    82   1e-13
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...    81   1e-13
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...    81   1e-13
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...    81   1e-13
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      81   1e-13

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  159 bits (402), Expect = 4e-37
 Identities = 80/97 (82%), Positives = 86/97 (88%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKGVRKN 180
           LRNHDGSTRIL++VRYVPKLKKN+ISLG LESKGLVVT+ D I KATSGALVMLKGV KN
Sbjct: 271 LRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMKN 330

Query: 181 NMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
           N+YY  GSTV GTV  ATSSSK DA+ATKLWHMRLGH
Sbjct: 331 NLYYYQGSTVVGTVAAATSSSKKDAEATKLWHMRLGH 367


>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1131

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 44/98 (44%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALV-MLKGVRK 177
           ++ HDG TR LK+VRY+P + +N+ISL TL+++G   + L  + K + G+LV M+  +  
Sbjct: 289 IKTHDGMTRTLKDVRYIPGMARNLISLSTLDAEGYKYSGLGGVVKVSKGSLVYMISDMNS 348

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y   GST+ G+V TA + SK++   T LWHMRLGH
Sbjct: 349 ANLYVLRGSTLHGSV-TAAAVSKDEPSKTNLWHMRLGH 385


>emb|CAN68884.1| hypothetical protein VITISV_039230 [Vitis vinifera]
          Length = 220

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 45/97 (46%), Positives = 65/97 (67%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKGVRKN 180
           ++ +DG  R L +VR+VPKLKKN+ISLGTL+S G        + + + GALV++KG + N
Sbjct: 115 IKMYDGFIRTLTDVRHVPKLKKNLISLGTLDSNGCTYKAEGGVLRISKGALVVMKGKKIN 174

Query: 181 NMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            +Y   GSTV G V  +T  SK+  + T+L+H+RLGH
Sbjct: 175 GLYTLKGSTVIGVVVVST--SKSIIETTRLFHIRLGH 209


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 41/97 (42%), Positives = 59/97 (60%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKGVRKN 180
           ++++DG  R+L++VRY+P+LK+N+ISLG L+  G          +   G+L ++KG  KN
Sbjct: 307 IKHYDGIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKN 366

Query: 181 NMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            +Y   G TV G V+T     K D   TKLWH RLGH
Sbjct: 367 GLYTLIGQTVTGKVSTVL---KEDVGTTKLWHQRLGH 400


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG  R L +VR++P LK+++ISL TL+ KG   +  D I K T G+LV++K  ++ 
Sbjct: 346 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKS 405

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y+  G+T+ G V T + S  N + AT LWHMRLGH
Sbjct: 406 ANLYHLQGTTILGNVATVSDSLSN-SDATNLWHMRLGH 442


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG  R L +VR++P LK+++ISL TL+ KG   +  D I K T G+LV++K  ++ 
Sbjct: 163 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKS 222

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y+  G+T+ G V T + S  N + AT LWHMRLGH
Sbjct: 223 ANLYHLQGTTILGNVATVSDSLSN-SDATNLWHMRLGH 259


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG  R L +VR++P LK+++ISL TL+ KG   +  D I K T G+LV++K  ++ 
Sbjct: 331 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKS 390

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y+  G+T+ G V T + S  N + AT LWHMRLGH
Sbjct: 391 ANLYHLQGTTILGNVATVSDSLSN-SDATNLWHMRLGH 427


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1156

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++ HDG TR LK+VR++P + +N+ISL TL+++G   +    + K + G+LV + G +  
Sbjct: 279 IKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNS 338

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y   GST+ G++T A + SK++   T LWHMRLGH
Sbjct: 339 TNLYVLRGSTLHGSITAA-AVSKDEPSKTNLWHMRLGH 375


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77548751|gb|ABA91548.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 2340

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG  R L +VR++P LK+++ISL TL+ KG   +  D I K T G+LV++K  ++ 
Sbjct: 553 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 612

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y+  G+T+ G V  A S S +++ AT LWHMRLGH
Sbjct: 613 ANLYHLRGTTILGNVA-AVSDSLSNSDATNLWHMRLGH 649


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
           gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
           Japonica Group]
          Length = 1601

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG  R L +VR++P LK+++ISL TL+ KG   +  D I K T G+LV++K  ++ 
Sbjct: 346 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 405

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y+  G+T+ G V  A S S +++ AT LWHMRLGH
Sbjct: 406 ANLYHLRGTTILGNVA-AVSDSLSNSDATNLWHMRLGH 442


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 44/97 (45%), Positives = 61/97 (62%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKGVRKN 180
           +R HDGS   L EVR+VP + KN+ISL  L+SKG   +  D + +   G+ ++LKGV + 
Sbjct: 325 IRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRG 384

Query: 181 NMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            +Y+  GSTV G+   A SS  +    TKLWH+RLGH
Sbjct: 385 TLYFLQGSTVTGSAHVA-SSEFHQKDMTKLWHIRLGH 420


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG  R L +VR++P LK+++ISL TL+ KG   +  D I K T G+LV++K  ++ 
Sbjct: 381 IKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 440

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y+  G+T+ G V  A S S +++ AT LWHMRLGH
Sbjct: 441 ANLYHLRGTTILGNVA-AVSDSLSNSDATNLWHMRLGH 477


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1312

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG  R L +VR++P LK+++ISL TL+ KG   +  D I K T G+LV++K  ++ 
Sbjct: 381 IKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 440

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y+  G+T+ G V  A S S +++ AT LWHMRLGH
Sbjct: 441 ANLYHLRGTTILGNVA-AVSDSLSNSDATNLWHMRLGH 477


>emb|CAN75282.1| hypothetical protein VITISV_007973 [Vitis vinifera]
          Length = 226

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 42/97 (43%), Positives = 58/97 (59%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKGVRKN 180
           ++++DG  RIL+ VRY+PKLK+N+ISLG L+  G          +   G+L+++KG  KN
Sbjct: 124 IKHYDGFERILEYVRYIPKLKRNLISLGMLDKPGYTFKSEPNSLRVDRGSLIVMKGTVKN 183

Query: 181 NMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            +Y   G TV   V+T     K D   TKLWH RLGH
Sbjct: 184 GLYTLIGQTVTSKVSTML---KEDVGTTKLWHQRLGH 217


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score = 82.0 bits (201), Expect = 7e-14
 Identities = 42/98 (42%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++ HDG TR LK+VR++P + +N+ISL TL+++G   +    + K + G+LV + G +  
Sbjct: 339 IKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNS 398

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y   GST+ G+VT A + SK++   T LWHMRLGH
Sbjct: 399 ANLYVLRGSTLHGSVTAA-AVSKDEPIKTNLWHMRLGH 435


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1175

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 41/98 (41%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++ HDG TR LK+VR++P++ +N+ISL TL+++G   +    + K + G+LV + G +  
Sbjct: 234 IKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNS 293

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y   GST+ G VT A  S K++   T +WHMRLGH
Sbjct: 294 ANLYVLRGSTLHGYVTAAVVS-KDEPSKTNMWHMRLGH 330


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG TR LK VRY+P + +N+ISL TL+++G   +  D + K + G+LV LKG V  
Sbjct: 337 IKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNS 396

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
             +Y   G T+ G+ + A + + ++   T LWHMRLGH
Sbjct: 397 AKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGH 434


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
           Group] gi|22655747|gb|AAN04164.1| Putative
           retrotransposon protein [Oryza sativa Japonica Group]
           gi|31431214|gb|AAP53029.1| retrotransposon protein,
           putative, Ty1-copia subclass, expressed [Oryza sativa
           Japonica Group]
          Length = 1229

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++ HDG TR LK+VR++P + +N+ISL TL+++G   +    + K + G+LV + G +  
Sbjct: 336 IKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNS 395

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y   GST+ G++T A + SK++   T LWHMRLGH
Sbjct: 396 ANLYVLRGSTLHGSLTAA-AVSKDEPSKTNLWHMRLGH 432


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG  R L +VR++P LK+++IS  TL+ KG   +  D I K T G+LV++K  ++ 
Sbjct: 312 IKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 371

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y+  G+T+ G V  A S S +++ AT LWHMRLGH
Sbjct: 372 ANLYHLRGTTILGNVA-AVSDSLSNSDATNLWHMRLGH 408


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = +1

Query: 1   LRNHDGSTRILKEVRYVPKLKKNIISLGTLESKGLVVTLLDVIFKATSGALVMLKG-VRK 177
           ++  DG  R L +VR++P LK+++ISL TL+ KG   +  D I K T G+LV++K  ++ 
Sbjct: 255 IKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKY 314

Query: 178 NNMYYC*GSTVFGTVTTATSSSKNDAKATKLWHMRLGH 291
            N+Y+  G+T+ G V  A S S +++ AT LWHMRLGH
Sbjct: 315 ANLYHLRGTTILGNVA-AVSDSLSNSDATNLWHMRLGH 351