BLASTX nr result
ID: Rauwolfia21_contig00036799
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00036799
(246 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 153 2e-35
emb|CAN68884.1| hypothetical protein VITISV_039230 [Vitis vinifera] 85 1e-14
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 79 6e-13
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 77 2e-12
emb|CAN73519.1| hypothetical protein VITISV_010313 [Vitis vinifera] 75 7e-12
gb|EXB89104.1| hypothetical protein L484_016664 [Morus notabilis] 74 2e-11
emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera] 74 2e-11
gb|ABD63150.1| Putative retroelement pol polyprotein, related [A... 72 6e-11
emb|CAN71583.1| hypothetical protein VITISV_043292 [Vitis vinifera] 72 6e-11
emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera] 72 6e-11
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 72 1e-10
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 72 1e-10
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 72 1e-10
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 72 1e-10
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 72 1e-10
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 72 1e-10
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 71 1e-10
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 71 1e-10
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 70 2e-10
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 70 3e-10
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 153 bits (387), Expect = 2e-35
Identities = 78/82 (95%), Positives = 81/82 (98%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKN 67
LRNHDGSTRILR+VRYVPKLKKNLISLGALESKGLVVT+RDG+LKATSGALVMLKGV KN
Sbjct: 271 LRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMKN 330
Query: 66 NLYYYQGSTVVGTVAAATSSSK 1
NLYYYQGSTVVGTVAAATSSSK
Sbjct: 331 NLYYYQGSTVVGTVAAATSSSK 352
>emb|CAN68884.1| hypothetical protein VITISV_039230 [Vitis vinifera]
Length = 220
Score = 84.7 bits (208), Expect = 1e-14
Identities = 42/81 (51%), Positives = 56/81 (69%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKN 67
++ +DG R L +VR+VPKLKKNLISLG L+S G GVL+ + GALV++KG + N
Sbjct: 115 IKMYDGFIRTLTDVRHVPKLKKNLISLGTLDSNGCTYKAEGGVLRISKGALVVMKGKKIN 174
Query: 66 NLYYYQGSTVVGTVAAATSSS 4
LY +GSTV+G V +TS S
Sbjct: 175 GLYTLKGSTVIGVVVVSTSKS 195
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 79.0 bits (193), Expect = 6e-13
Identities = 40/79 (50%), Positives = 54/79 (68%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKN 67
+R HDGS L EVR+VP + KNLISL L+SKG + +DGVL+ G+ ++LKGV +
Sbjct: 325 IRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRG 384
Query: 66 NLYYYQGSTVVGTVAAATS 10
LY+ QGSTV G+ A+S
Sbjct: 385 TLYFLQGSTVTGSAHVASS 403
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKN 67
++ DG R L +VR++P LK+NLISL L+ KG + DG+LK T G+LV++K KN
Sbjct: 288 IKMFDGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKN 347
Query: 66 -NLYYYQGSTVVGTVAAATSS 7
+LY+ QG+T+VG VAA T S
Sbjct: 348 ADLYHLQGTTIVGNVAAVTDS 368
>emb|CAN73519.1| hypothetical protein VITISV_010313 [Vitis vinifera]
Length = 322
Score = 75.5 bits (184), Expect = 7e-12
Identities = 38/77 (49%), Positives = 48/77 (62%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKN 67
LR HDG + L V YV K NLISLG L+S G + + +G LK GA++++KG+RKN
Sbjct: 84 LRLHDGMKKTLTNVMYVLDFKGNLISLGVLDSMGCTIKIENGTLKILKGAMIVMKGLRKN 143
Query: 66 NLYYYQGSTVVGTVAAA 16
LY QG TV GT A
Sbjct: 144 GLYTLQGETVDGTSIVA 160
>gb|EXB89104.1| hypothetical protein L484_016664 [Morus notabilis]
Length = 718
Score = 74.3 bits (181), Expect = 2e-11
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALV------ML 85
L+ HDGST++L +VRYVP LKKN I LG L SKG VT+RDG+LK S LV +L
Sbjct: 125 LKCHDGSTKVLTDVRYVPHLKKNHIFLGVLGSKGFTVTMRDGILKVVSSTLVNLVKHGLL 184
Query: 84 KGVRKNNLYYYQ 49
KG + L +Y+
Sbjct: 185 KGAKTGKLEFYE 196
>emb|CAN62092.1| hypothetical protein VITISV_022473 [Vitis vinifera]
Length = 318
Score = 73.9 bits (180), Expect = 2e-11
Identities = 37/81 (45%), Positives = 50/81 (61%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKN 67
++ HD L ++R+VPKLKK LISLG L+S G GVL+ GALV++KG + N
Sbjct: 73 IKTHDDIIMTLIDLRHVPKLKKKLISLGTLDSNGCTYKAGGGVLRILKGALVVMKGNKIN 132
Query: 66 NLYYYQGSTVVGTVAAATSSS 4
LY QG T++G V + S S
Sbjct: 133 GLYTLQGGTIIGAVVVSISES 153
>gb|ABD63150.1| Putative retroelement pol polyprotein, related [Asparagus
officinalis]
Length = 168
Score = 72.4 bits (176), Expect = 6e-11
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKN 67
+R HDG R L++VR+VP+LKKNLIS+GALE+KG VT D K T G+LV++KGV
Sbjct: 55 IRMHDGVVRELKDVRFVPQLKKNLISVGALEAKGFKVTFEDAEAKVTKGSLVVMKGVCSL 114
Query: 66 NLYYYQG 46
L +G
Sbjct: 115 ELILSEG 121
>emb|CAN71583.1| hypothetical protein VITISV_043292 [Vitis vinifera]
Length = 531
Score = 72.4 bits (176), Expect = 6e-11
Identities = 36/70 (51%), Positives = 46/70 (65%)
Frame = -1
Query: 222 RILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKNNLYYYQGS 43
R L VRYV LK+NLI +G L+S G + + +G LK GA +++KG+RKN LY QG
Sbjct: 263 RTLTNVRYVLDLKRNLIXMGMLDSMGCTIKIXNGELKILKGAKIVMKGIRKNGLYTLQGE 322
Query: 42 TVVGTVAAAT 13
TVVGT AT
Sbjct: 323 TVVGTSIVAT 332
>emb|CAN66775.1| hypothetical protein VITISV_035302 [Vitis vinifera]
Length = 734
Score = 72.4 bits (176), Expect = 6e-11
Identities = 36/74 (48%), Positives = 50/74 (67%)
Frame = -1
Query: 225 TRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKNNLYYYQG 46
+R L ++R+VPKLKK LISLG L+S GVL+ + GALV++KG + N LY QG
Sbjct: 134 SRTLTDLRHVPKLKKILISLGTLDSNKCTYKAGGGVLRISKGALVVMKGKKINGLYTLQG 193
Query: 45 STVVGTVAAATSSS 4
ST++G + +TS S
Sbjct: 194 STIIGAIVVSTSES 207
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKG-VRK 70
++ DG R L +VR++P LK++LISL L+ KG + DG+LK T G+LV++K ++
Sbjct: 553 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 612
Query: 69 NNLYYYQGSTVVGTVAAATSS 7
NLY+ +G+T++G VAA + S
Sbjct: 613 ANLYHLRGTTILGNVAAVSDS 633
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/81 (43%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLK-GVRK 70
++ DG R L +VR++P LK++LISL L+ KG + DG+LK T G+LV++K ++
Sbjct: 346 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKS 405
Query: 69 NNLYYYQGSTVVGTVAAATSS 7
NLY+ QG+T++G VA + S
Sbjct: 406 ANLYHLQGTTILGNVATVSDS 426
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKG-VRK 70
++ DG R L +VR++P LK++LISL L+ KG + DG+LK T G+LV++K ++
Sbjct: 346 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 405
Query: 69 NNLYYYQGSTVVGTVAAATSS 7
NLY+ +G+T++G VAA + S
Sbjct: 406 ANLYHLRGTTILGNVAAVSDS 426
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/81 (43%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKG-VRK 70
++ DG R L +VR++P LK++LISL L+ KG + DG+LK T G+LV++K ++
Sbjct: 163 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKS 222
Query: 69 NNLYYYQGSTVVGTVAAATSS 7
NLY+ QG+T++G VA + S
Sbjct: 223 ANLYHLQGTTILGNVATVSDS 243
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/81 (43%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKG-VRK 70
++ DG R L +VR++P LK++LISL L+ KG + DG+LK T G+LV++K ++
Sbjct: 331 IKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKS 390
Query: 69 NNLYYYQGSTVVGTVAAATSS 7
NLY+ QG+T++G VA + S
Sbjct: 391 ANLYHLQGTTILGNVATVSDS 411
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/80 (43%), Positives = 47/80 (58%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKN 67
++N D +T +L+ VRYVP + KNLIS+G LE +G + G LK G + +LKG +
Sbjct: 351 IQNDDNTTVLLKNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGKKVG 410
Query: 66 NLYYYQGSTVVGTVAAATSS 7
LY QG V G A TSS
Sbjct: 411 TLYLLQGVVVTGNANAVTSS 430
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKG-VRK 70
++ DG R L +VR++P LK++LISL L+ KG + DG+LK T G+LV++K ++
Sbjct: 381 IKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 440
Query: 69 NNLYYYQGSTVVGTVAAATSS 7
NLY+ +G+T++G VAA + S
Sbjct: 441 ANLYHLRGTTILGNVAAVSDS 461
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKG-VRK 70
++ DG R L +VR++P LK++LISL L+ KG + DG+LK T G+LV++K ++
Sbjct: 381 IKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKS 440
Query: 69 NNLYYYQGSTVVGTVAAATSS 7
NLY+ +G+T++G VAA + S
Sbjct: 441 ANLYHLRGTTILGNVAAVSDS 461
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 70.5 bits (171), Expect = 2e-10
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKG-VRK 70
++ DG R L +VR++P LK++LISL L+ KG + DG+LK T G+LV++K ++
Sbjct: 255 IKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKY 314
Query: 69 NNLYYYQGSTVVGTVAAATSS 7
NLY+ +G+T++G VAA + S
Sbjct: 315 ANLYHLRGTTILGNVAAVSDS 335
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 70.1 bits (170), Expect = 3e-10
Identities = 32/72 (44%), Positives = 48/72 (66%)
Frame = -1
Query: 246 LRNHDGSTRILREVRYVPKLKKNLISLGALESKGLVVTLRDGVLKATSGALVMLKGVRKN 67
++N DGST +L +VRY+P++ KNLISLG LE KG + G+L L +L G +++
Sbjct: 358 IKNEDGSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKGILTIFKNDLTVLTGKKES 417
Query: 66 NLYYYQGSTVVG 31
LY+ QG+T+ G
Sbjct: 418 TLYFLQGTTLAG 429