BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00030918
         (773 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ...   100   2e-34
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...    95   1e-33
ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitoc...    92   9e-33
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...    97   1e-31
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...    94   3e-31
gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus pe...    96   3e-31
ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mit...    94   3e-31
gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24...    95   1e-29
gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus...    95   1e-29
ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thalian...    95   1e-29
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]            89   2e-29
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...    92   3e-29
ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitoc...    92   3e-29
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]            89   4e-29
ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutr...    90   7e-29
ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arab...    91   2e-28
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...    91   3e-28
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...    87   3e-27
ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Caps...    87   5e-27
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...    84   1e-26

>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 471

 Score =  100 bits (249), Expect(2) = 2e-34
 Identities = 49/79 (62%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
 Frame = -3

Query: 387 VRHYSKSKIQPPR----VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKK-SASG 223
           VRHYS+    PP     V+RV+N +++L  PK GPKPRQLLSLPPFPG+PLPGK    + 
Sbjct: 14  VRHYSRVAPPPPAYADPVLRVSNSVAYLGAPKQGPKPRQLLSLPPFPGYPLPGKNPGGTA 73

Query: 222 RTTAISWLKYYFDDIPGGA 166
           R TAISWLKYYFD+IP  A
Sbjct: 74  RVTAISWLKYYFDEIPDSA 92



 Score = 72.8 bits (177), Expect(2) = 2e-34
 Identities = 39/63 (61%), Positives = 46/63 (73%), Gaps = 6/63 (9%)
 Frame = -1

Query: 173 VVQMESSKA------KGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGT 12
           +VQMESS A      +    K ++KIKH EVME G R++VPVS+AET ISKRFD IPSGT
Sbjct: 101 LVQMESSNAGDTCIERDGLMKPLRKIKHNEVMEVGTRVWVPVSIAETRISKRFDCIPSGT 160

Query: 11  LYP 3
           LYP
Sbjct: 161 LYP 163


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score = 95.1 bits (235), Expect(2) = 1e-33
 Identities = 44/65 (67%), Positives = 52/65 (80%), Gaps = 6/65 (9%)
 Frame = -3

Query: 348 VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSASG------RTTAISWLKYYF 187
           V+RV+N+I+HL R K+G KP QLLSLPPFPGHPLPGKK A+G        TAISW+KYYF
Sbjct: 34  VIRVSNNITHLGRQKEGAKPSQLLSLPPFPGHPLPGKKVATGPDQPSCHVTAISWIKYYF 93

Query: 186 DDIPG 172
           D+IPG
Sbjct: 94  DEIPG 98



 Score = 75.5 bits (184), Expect(2) = 1e-33
 Identities = 38/60 (63%), Positives = 50/60 (83%), Gaps = 3/60 (5%)
 Frame = -1

Query: 173 VVQMESSK---AKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTLYP 3
           +VQ+E ++   +K  QT+ ++KIKH EVME GARI+VP+SVAET ISKR+D+IPSGTLYP
Sbjct: 109 LVQLEFNELFTSKEGQTRLLRKIKHSEVMEVGARIHVPISVAETRISKRYDVIPSGTLYP 168


>ref|XP_004243668.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Solanum
           lycopersicum]
          Length = 475

 Score = 92.0 bits (227), Expect(2) = 9e-33
 Identities = 44/65 (67%), Positives = 51/65 (78%), Gaps = 6/65 (9%)
 Frame = -3

Query: 348 VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSASG------RTTAISWLKYYF 187
           V+RV+N+I+HL R KDG KP QLLSLPPFPG PLPGKK A+G        TAISW+KYYF
Sbjct: 34  VIRVSNNITHLGRQKDGVKPSQLLSLPPFPGCPLPGKKVATGPDQPSCHVTAISWIKYYF 93

Query: 186 DDIPG 172
           D+IPG
Sbjct: 94  DEIPG 98



 Score = 75.5 bits (184), Expect(2) = 9e-33
 Identities = 38/60 (63%), Positives = 50/60 (83%), Gaps = 3/60 (5%)
 Frame = -1

Query: 173 VVQMESSK---AKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTLYP 3
           +VQ+E ++   +K  QT+ ++KIKH EVME GARI+VP+SVAET ISKR+D+IPSGTLYP
Sbjct: 109 LVQLELNELFTSKEGQTRLLRKIKHSEVMEVGARIHVPISVAETRISKRYDVIPSGTLYP 168


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score = 97.4 bits (241), Expect(2) = 1e-31
 Identities = 45/73 (61%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
 Frame = -3

Query: 384 RHYSKSKIQPPR----VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSASGRT 217
           R YS+    PP     V+RV+N+++HL  PKDGPKPRQLLSLPPFPG PLPG+ S +   
Sbjct: 15  RSYSRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFPGLPLPGRNSMASHV 74

Query: 216 TAISWLKYYFDDI 178
           TAISW+KYYFD+I
Sbjct: 75  TAISWVKYYFDEI 87



 Score = 66.6 bits (161), Expect(2) = 1e-31
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = -1

Query: 128 SMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTLYP 3
           S++KIKH ++ME GAR++V VSVAET ISKRFD IPSGTLYP
Sbjct: 119 SLRKIKHNDIMEAGARVHVAVSVAETRISKRFDTIPSGTLYP 160


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 476

 Score = 93.6 bits (231), Expect(2) = 3e-31
 Identities = 47/77 (61%), Positives = 56/77 (72%), Gaps = 11/77 (14%)
 Frame = -3

Query: 384 RHYSKSKIQPPR------VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSASG 223
           RHYS+  IQPPR      V+ V+N+I+ LD PK+GPKPRQLLSLPPFPGHPLP K S SG
Sbjct: 19  RHYSR--IQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISG 76

Query: 222 R-----TTAISWLKYYF 187
                  TA++W+KYYF
Sbjct: 77  SRQRDYVTAVNWIKYYF 93



 Score = 68.9 bits (167), Expect(2) = 3e-31
 Identities = 37/60 (61%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
 Frame = -1

Query: 173 VVQME---SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTLYP 3
           +VQME   SS  K  Q K M+KI+  EVM+ GAR++VPVS+ ET ISKR+D IPSGTLYP
Sbjct: 109 LVQMEADDSSTQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPSGTLYP 168


>gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score = 95.5 bits (236), Expect(2) = 3e-31
 Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 10/92 (10%)
 Frame = -3

Query: 423 MWNKVLKLGDCGVRHYSKSKIQPPR------VVRVTNHISHLDRPKDGPKPRQLLSLPPF 262
           MW +  ++    V     S++ PP       ++RV+NH++ L  PK+GPKPRQLLSLPPF
Sbjct: 1   MWRRSTRVLCRHVARREYSRVCPPPAKSAGPLIRVSNHVARLGPPKEGPKPRQLLSLPPF 60

Query: 261 PGHPLPGKKSASG----RTTAISWLKYYFDDI 178
           PGHPLPGK+S  G    R TA+SW+KYYFD I
Sbjct: 61  PGHPLPGKRSHEGGVVSRVTAVSWVKYYFDGI 92



 Score = 67.0 bits (162), Expect(2) = 3e-31
 Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
 Frame = -1

Query: 173 VVQMESSKA--KGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTLYP 3
           +VQME      K  Q K M+KI+  EVME GAR+YVPVSV E+ +S+RFD IPSGTLYP
Sbjct: 105 LVQMECPGMIEKEGQMKPMRKIRPSEVMEVGARVYVPVSVVESRVSRRFDCIPSGTLYP 163


>ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X2 [Glycine max]
          Length = 449

 Score = 93.6 bits (231), Expect(2) = 3e-31
 Identities = 47/77 (61%), Positives = 56/77 (72%), Gaps = 11/77 (14%)
 Frame = -3

Query: 384 RHYSKSKIQPPR------VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSASG 223
           RHYS+  IQPPR      V+ V+N+I+ LD PK+GPKPRQLLSLPPFPGHPLP K S SG
Sbjct: 19  RHYSR--IQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISG 76

Query: 222 R-----TTAISWLKYYF 187
                  TA++W+KYYF
Sbjct: 77  SRQRDYVTAVNWIKYYF 93



 Score = 68.9 bits (167), Expect(2) = 3e-31
 Identities = 37/60 (61%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
 Frame = -1

Query: 173 VVQME---SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTLYP 3
           +VQME   SS  K  Q K M+KI+  EVM+ GAR++VPVS+ ET ISKR+D IPSGTLYP
Sbjct: 109 LVQMEADDSSTQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPSGTLYP 168


>gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
           surA-hepA intergenic region yab0 from Escherichia coli
           genome gb|AE000116, and to hypothetical YABO family
           PF|00849 [Arabidopsis thaliana]
          Length = 491

 Score = 95.1 bits (235), Expect(2) = 1e-29
 Identities = 43/78 (55%), Positives = 55/78 (70%), Gaps = 8/78 (10%)
 Frame = -3

Query: 387 VRHYSKSKIQPPRVVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKS-------- 232
           +R YS+    P  V+RVTN+++HL  PK GP PRQL+SLPPFPGHPLPGK +        
Sbjct: 17  IRRYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADGDDGD 76

Query: 231 ASGRTTAISWLKYYFDDI 178
           + G  TAISW+KYYF++I
Sbjct: 77  SGGHVTAISWVKYYFEEI 94



 Score = 62.0 bits (149), Expect(2) = 1e-29
 Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
 Frame = -1

Query: 173 VVQME------SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGT 12
           +VQME      +S+ K      M+KIKH EVM+ G +I++PVS+AE  ISKR+D IPSGT
Sbjct: 107 LVQMEFRGRRDASREKEDGAIPMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGT 166

Query: 11  LYP 3
           LYP
Sbjct: 167 LYP 169


>gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score = 94.7 bits (234), Expect(2) = 1e-29
 Identities = 47/78 (60%), Positives = 57/78 (73%), Gaps = 11/78 (14%)
 Frame = -3

Query: 387 VRHYSKSKIQPPR------VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSAS 226
           VRHYS+  IQPPR      V+RV+N+++ LD PK+GPKPRQLLSLPPFPGHPLP K S S
Sbjct: 19  VRHYSR--IQPPRPVSVEPVIRVSNNVARLDAPKEGPKPRQLLSLPPFPGHPLPAKSSTS 76

Query: 225 -----GRTTAISWLKYYF 187
                   TA++W+KYYF
Sbjct: 77  DPGQRDYVTAVNWIKYYF 94



 Score = 62.4 bits (150), Expect(2) = 1e-29
 Identities = 31/56 (55%), Positives = 40/56 (71%)
 Frame = -1

Query: 170 VQMESSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTLYP 3
           V  +S   K    K M+KI+  EVM+ GAR++VPVS+AET +SKR+D IP GTLYP
Sbjct: 117 VTADSYTQKENLMKPMRKIRPNEVMKHGARVHVPVSIAETRVSKRYDAIPCGTLYP 172


>ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
           gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA
           pseudouridine synthase 3, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 3; AltName:
           Full=RNA-uridine isomerase 3; Flags: Precursor
           gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis
           thaliana] gi|56790228|gb|AAW30031.1| At1g78910
           [Arabidopsis thaliana] gi|332198052|gb|AEE36173.1| RNA
           pseudourine synthase 3 [Arabidopsis thaliana]
          Length = 478

 Score = 95.1 bits (235), Expect(2) = 1e-29
 Identities = 43/78 (55%), Positives = 55/78 (70%), Gaps = 8/78 (10%)
 Frame = -3

Query: 387 VRHYSKSKIQPPRVVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKS-------- 232
           +R YS+    P  V+RVTN+++HL  PK GP PRQL+SLPPFPGHPLPGK +        
Sbjct: 17  IRRYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADGDDGD 76

Query: 231 ASGRTTAISWLKYYFDDI 178
           + G  TAISW+KYYF++I
Sbjct: 77  SGGHVTAISWVKYYFEEI 94



 Score = 62.0 bits (149), Expect(2) = 1e-29
 Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
 Frame = -1

Query: 173 VVQME------SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGT 12
           +VQME      +S+ K      M+KIKH EVM+ G +I++PVS+AE  ISKR+D IPSGT
Sbjct: 107 LVQMEFRGRRDASREKEDGAIPMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGT 166

Query: 11  LYP 3
           LYP
Sbjct: 167 LYP 169


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score = 89.4 bits (220), Expect(2) = 2e-29
 Identities = 44/76 (57%), Positives = 58/76 (76%), Gaps = 6/76 (7%)
 Frame = -3

Query: 387 VRHYSKSKIQPPR------VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSAS 226
           +R YS+  I+PP       V+RV+N+++ L  PK+GPKPRQLLSLPPFPG PLPGKKS  
Sbjct: 6   IRQYSR--IRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLPGKKSE- 62

Query: 225 GRTTAISWLKYYFDDI 178
            R TAI+W+KYYF+++
Sbjct: 63  -RVTAITWVKYYFEEV 77



 Score = 66.6 bits (161), Expect(2) = 2e-29
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
 Frame = -1

Query: 173 VVQMESSK------AKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGT 12
           +VQME S        +  + K M+KIK  EVM  G RIYVPVSVAE+ ISKRFD+IPSGT
Sbjct: 90  LVQMECSNFGDPLAERDRKMKPMRKIKPNEVMVEGTRIYVPVSVAESRISKRFDVIPSGT 149

Query: 11  LYP 3
           L+P
Sbjct: 150 LHP 152


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score = 92.4 bits (228), Expect(2) = 3e-29
 Identities = 47/83 (56%), Positives = 58/83 (69%), Gaps = 11/83 (13%)
 Frame = -3

Query: 387 VRHYSKSKIQPPR------VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSAS 226
           VRHYS+  I+PP+      V+RV+N+I+ LD PK+GPKPRQLLSLPPFP HPLPGK S S
Sbjct: 18  VRHYSR--IRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLPGKNSTS 75

Query: 225 G-----RTTAISWLKYYFDDIPG 172
                   TA++W+KYYF    G
Sbjct: 76  APGKRDHVTAVNWIKYYFKGTSG 98



 Score = 63.2 bits (152), Expect(2) = 3e-29
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
 Frame = -1

Query: 173 VVQME------SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGT 12
           +VQME      S K K    K M+KI+  EVM+PGAR++V VS+AET ISKRFD IPSGT
Sbjct: 109 LVQMEDLIVDDSFKQKKELMKPMRKIRPNEVMKPGARVHVSVSMAETKISKRFDPIPSGT 168

Query: 11  LYP 3
           L P
Sbjct: 169 LCP 171


>ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X2 [Cicer arietinum]
          Length = 360

 Score = 92.4 bits (228), Expect(2) = 3e-29
 Identities = 47/83 (56%), Positives = 58/83 (69%), Gaps = 11/83 (13%)
 Frame = -3

Query: 387 VRHYSKSKIQPPR------VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSAS 226
           VRHYS+  I+PP+      V+RV+N+I+ LD PK+GPKPRQLLSLPPFP HPLPGK S S
Sbjct: 18  VRHYSR--IRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLPGKNSTS 75

Query: 225 G-----RTTAISWLKYYFDDIPG 172
                   TA++W+KYYF    G
Sbjct: 76  APGKRDHVTAVNWIKYYFKGTSG 98



 Score = 63.2 bits (152), Expect(2) = 3e-29
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
 Frame = -1

Query: 173 VVQME------SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGT 12
           +VQME      S K K    K M+KI+  EVM+PGAR++V VS+AET ISKRFD IPSGT
Sbjct: 109 LVQMEDLIVDDSFKQKKELMKPMRKIRPNEVMKPGARVHVSVSMAETKISKRFDPIPSGT 168

Query: 11  LYP 3
           L P
Sbjct: 169 LCP 171


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score = 88.6 bits (218), Expect(2) = 4e-29
 Identities = 44/76 (57%), Positives = 57/76 (75%), Gaps = 6/76 (7%)
 Frame = -3

Query: 387 VRHYSKSKIQPPR------VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSAS 226
           +R YS+  I+PP       V+RV+N+++ L  PK+GPKPRQLLSLPPFPG PLPGK S  
Sbjct: 6   IRQYSR--IRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLPGKNSE- 62

Query: 225 GRTTAISWLKYYFDDI 178
            R TAISW+KYYF+++
Sbjct: 63  -RVTAISWVKYYFEEV 77



 Score = 66.6 bits (161), Expect(2) = 4e-29
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
 Frame = -1

Query: 173 VVQMESSK------AKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGT 12
           +VQME S        +  + K M+KIK  EVM  G RIYVPVSVAE+ ISKRFD+IPSGT
Sbjct: 90  LVQMECSNFGDPLAERDRKMKPMRKIKPNEVMVEGTRIYVPVSVAESRISKRFDVIPSGT 149

Query: 11  LYP 3
           L+P
Sbjct: 150 LHP 152


>ref|XP_006389943.1| hypothetical protein EUTSA_v10018480mg [Eutrema salsugineum]
           gi|557086377|gb|ESQ27229.1| hypothetical protein
           EUTSA_v10018480mg [Eutrema salsugineum]
          Length = 478

 Score = 90.1 bits (222), Expect(2) = 7e-29
 Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
 Frame = -3

Query: 384 RHYSKSKIQPPRVVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSA---SGRTT 214
           R YS+    P  V+RVTN+I+ L  PK GP PRQL+SLPPFPGHPLPGK +     G  T
Sbjct: 23  RRYSRVAPPPSTVIRVTNNIAQLGPPKKGPLPRQLMSLPPFPGHPLPGKNAGVDEDGHVT 82

Query: 213 AISWLKYYFDDI 178
           AISW+KYY ++I
Sbjct: 83  AISWVKYYLEEI 94



 Score = 64.3 bits (155), Expect(2) = 7e-29
 Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 6/63 (9%)
 Frame = -1

Query: 173 VVQME------SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGT 12
           +VQME      +S+ K    + ++K+KH EVM+ G +I++PVS+AET ISKR+D IPSGT
Sbjct: 107 LVQMEFRGRRDASREKQDGVRPIKKVKHNEVMQIGDKIWLPVSIAETRISKRYDTIPSGT 166

Query: 11  LYP 3
           LYP
Sbjct: 167 LYP 169


>ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
           lyrata] gi|297333602|gb|EFH64020.1| hypothetical protein
           ARALYDRAFT_477057 [Arabidopsis lyrata subsp. lyrata]
          Length = 477

 Score = 91.3 bits (225), Expect(2) = 2e-28
 Identities = 43/76 (56%), Positives = 54/76 (71%), Gaps = 7/76 (9%)
 Frame = -3

Query: 384 RHYSKSKIQPPRVVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSA-------S 226
           R YS+    P  V+RVTN+I+HL  PK GP PRQL+SLPPFPG+PLPGK +        S
Sbjct: 18  RRYSRVAPPPSSVLRVTNNIAHLGPPKQGPLPRQLISLPPFPGYPLPGKNAGVDGDEGDS 77

Query: 225 GRTTAISWLKYYFDDI 178
           G  TAISW+K+YF++I
Sbjct: 78  GHVTAISWVKFYFEEI 93



 Score = 62.0 bits (149), Expect(2) = 2e-28
 Identities = 29/41 (70%), Positives = 35/41 (85%)
 Frame = -1

Query: 125 MQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTLYP 3
           M+KIKH EVME G +I++PVS+AE  ISKR+D IPSGTLYP
Sbjct: 128 MRKIKHNEVMEIGDKIWLPVSIAEMRISKRYDTIPSGTLYP 168


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score = 90.9 bits (224), Expect(2) = 3e-28
 Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
 Frame = -3

Query: 423 MWNKVLK-LGDCGVRHYSKSKIQPPRVVRVTNH-ISHLDRPKDGPKPRQLLSLPPFPGHP 250
           MW K  + +    +RHYS+     P V+RV+   ++HL  PK GPKPRQLLSLPPFPGH 
Sbjct: 2   MWKKQAEFIWLSSIRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHN 61

Query: 249 LPGKK-SASGRTTAISWLKYYFDDI 178
           LPGK     G  TA+SW+KYYFD++
Sbjct: 62  LPGKHWGRQGHVTAVSWVKYYFDEV 86



 Score = 61.6 bits (148), Expect(2) = 3e-28
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 5/62 (8%)
 Frame = -1

Query: 173 VVQME-----SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTL 9
           +VQME      S  +  Q K ++KIK  EVMEPGARI++PVS+ E  ISKR+D IPSGTL
Sbjct: 99  LVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTL 158

Query: 8   YP 3
            P
Sbjct: 159 NP 160


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score = 87.4 bits (215), Expect(2) = 3e-27
 Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
 Frame = -3

Query: 423 MWNKVLK-LGDCGVRHYSKSKIQPPRVVRVTNH-ISHLDRPKDGPKPRQLLSLPPFPGHP 250
           MW K  + +    +RHYS+     P V+RV+   ++HL  PK GPKPRQLLSLPPFPGH 
Sbjct: 2   MWKKQAEFIWLSSIRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHN 61

Query: 249 LPGKK-SASGRTTAISWLKYYFDDI 178
           LPGK        TA+SW+KYYFD++
Sbjct: 62  LPGKHWGRQCHVTAVSWVKYYFDEV 86



 Score = 61.6 bits (148), Expect(2) = 3e-27
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 5/62 (8%)
 Frame = -1

Query: 173 VVQME-----SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTL 9
           +VQME      S  +  Q K ++KIK  EVMEPGARI++PVS+ E  ISKR+D IPSGTL
Sbjct: 99  LVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTL 158

Query: 8   YP 3
            P
Sbjct: 159 NP 160


>ref|XP_006300371.1| hypothetical protein CARUB_v10022381mg [Capsella rubella]
           gi|482569081|gb|EOA33269.1| hypothetical protein
           CARUB_v10022381mg [Capsella rubella]
          Length = 478

 Score = 87.4 bits (215), Expect(2) = 5e-27
 Identities = 41/77 (53%), Positives = 52/77 (67%), Gaps = 8/77 (10%)
 Frame = -3

Query: 384 RHYSKSKIQPPRVVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKS--------A 229
           R YS+    P  V+RVTN+++HL  PK GP PRQL+SLPPFPG PLPGK +        +
Sbjct: 18  RRYSRLAPPPSTVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGPPLPGKNAVDNGDDGDS 77

Query: 228 SGRTTAISWLKYYFDDI 178
               TAISW+KYYF++I
Sbjct: 78  GDHVTAISWVKYYFEEI 94



 Score = 60.8 bits (146), Expect(2) = 5e-27
 Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
 Frame = -1

Query: 173 VVQME------SSKAKGMQTKSMQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGT 12
           +VQME      +S+      + M+KIKH EVM+ G +I++PVS++E  ISKR+D IPSGT
Sbjct: 107 LVQMEFRGRRDASRENEDGARPMRKIKHDEVMQIGDKIWLPVSISEMRISKRYDTIPSGT 166

Query: 11  LYP 3
           LYP
Sbjct: 167 LYP 169


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score = 83.6 bits (205), Expect(2) = 1e-26
 Identities = 42/78 (53%), Positives = 52/78 (66%), Gaps = 9/78 (11%)
 Frame = -3

Query: 384 RHYSKSKIQPPR----VVRVTNHISHLDRPKDGPKPRQLLSLPPFPGHPLPGKKSA---- 229
           R YS+    PP     ++RV+N+I+ L  PK+GPK RQLLSLPPFPG+PLPGK       
Sbjct: 14  RCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYPLPGKNQVGVSG 73

Query: 228 -SGRTTAISWLKYYFDDI 178
            S   TAI W+KYYFD+I
Sbjct: 74  ESTHVTAIRWVKYYFDEI 91



 Score = 63.2 bits (152), Expect(2) = 1e-26
 Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 4/61 (6%)
 Frame = -1

Query: 173 VVQMESSKAKGMQTKS----MQKIKHIEVMEPGARIYVPVSVAETTISKRFDIIPSGTLY 6
           +VQ+E  +  G+  K     M+KI+  E+ME GARI++PVSVAE  +++RFD IPSGTLY
Sbjct: 104 LVQVECPQLGGLDEKGNLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLY 163

Query: 5   P 3
           P
Sbjct: 164 P 164