BLASTX nr result
ID: Rauwolfia21_contig00028298
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00028298
(287 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 88 1e-23
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 89 1e-23
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 88 1e-23
ref|XP_002335867.1| predicted protein [Populus trichocarpa] 75 1e-18
ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, part... 67 3e-16
ref|XP_006405939.1| hypothetical protein EUTSA_v10028029mg [Eutr... 65 6e-16
ref|XP_006398030.1| hypothetical protein EUTSA_v10001272mg [Eutr... 68 6e-16
ref|XP_006409622.1| hypothetical protein EUTSA_v10023188mg, part... 65 1e-15
ref|XP_006405940.1| hypothetical protein EUTSA_v10028344mg [Eutr... 61 3e-15
ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer ar... 75 9e-12
ref|XP_002318395.1| predicted protein [Populus trichocarpa] 75 9e-12
ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer ar... 74 2e-11
ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer ar... 74 3e-11
ref|XP_004491299.1| PREDICTED: genome polyprotein-like [Cicer ar... 74 3e-11
ref|XP_006376643.1| hypothetical protein POPTR_0012s01890g [Popu... 54 3e-11
ref|XP_004511013.1| PREDICTED: genome polyprotein-like [Cicer ar... 72 8e-11
gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus] 70 3e-10
gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus] 70 3e-10
ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru... 70 3e-10
gb|EOX92650.1| Polyprotein, putative [Theobroma cacao] 54 3e-10
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 87.8 bits (216), Expect(2) = 1e-23
Identities = 42/63 (66%), Positives = 49/63 (77%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F Q PFK+N++IN TK SHSGMN +HLQL EC EL Q +LIEPS QW+CEAF+VNK
Sbjct: 1372 FFIQLPFKRNENINPTKASHSGMNPEHLQLALKECDELQQFDLIEPSDSQWACEAFYVNK 1431
Query: 277 RSE 285
RSE
Sbjct: 1432 RSE 1434
Score = 47.4 bits (111), Expect(2) = 1e-23
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +2
Query: 5 QIQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
Q++ ++ +Q CAESH +FL+KCSHPL N DFF
Sbjct: 1341 QLEDVIKNQLCAESHVDFLSKCSHPLWLNQDFF 1373
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 89.0 bits (219), Expect(2) = 1e-23
Identities = 43/63 (68%), Positives = 49/63 (77%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F Q PFKKN++IN TK SHSGMN +HLQL EC EL Q +LIEPS QW+CEAF+VNK
Sbjct: 1371 FFIQLPFKKNENINPTKASHSGMNPEHLQLAIKECDELQQFDLIEPSDSQWACEAFYVNK 1430
Query: 277 RSE 285
RSE
Sbjct: 1431 RSE 1433
Score = 46.2 bits (108), Expect(2) = 1e-23
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +2
Query: 5 QIQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
Q++ ++ +Q CA+SH +FL+KCSHPL N DFF
Sbjct: 1340 QLEDVIKNQLCADSHVDFLSKCSHPLWLNQDFF 1372
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 87.8 bits (216), Expect(2) = 1e-23
Identities = 42/63 (66%), Positives = 49/63 (77%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F Q PFK+N++IN TK SHSGMN +HLQL EC EL Q +LIEPS QW+CEAF+VNK
Sbjct: 1372 FFIQLPFKRNENINPTKASHSGMNPEHLQLALKECDELQQFDLIEPSDSQWACEAFYVNK 1431
Query: 277 RSE 285
RSE
Sbjct: 1432 RSE 1434
Score = 47.4 bits (111), Expect(2) = 1e-23
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +2
Query: 5 QIQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
Q++ ++ +Q CAESH +FL+KCSHPL N DFF
Sbjct: 1341 QLEDVIKNQLCAESHVDFLSKCSHPLWLNQDFF 1373
>ref|XP_002335867.1| predicted protein [Populus trichocarpa]
Length = 656
Score = 75.1 bits (183), Expect(2) = 1e-18
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F + PFK N+DIN TK SHSGMN +H L EC L LIEP+ WSCEAF+VNK
Sbjct: 582 FFIKLPFKLNEDINPTKASHSGMNPEHKLLAQEECAHLQAQGLIEPTDSLWSCEAFYVNK 641
Query: 277 RSE 285
R+E
Sbjct: 642 RAE 644
Score = 43.5 bits (101), Expect(2) = 1e-18
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 8 IQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
I+ +I SC+ SH EFL KCSHPL +N FF
Sbjct: 552 IKAQIIQHSCSNSHQEFLAKCSHPLWQNPQFF 583
>ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
gi|557090298|gb|ESQ31006.1| hypothetical protein
EUTSA_v10012231mg, partial [Eutrema salsugineum]
Length = 1904
Score = 66.6 bits (161), Expect(2) = 3e-16
Identities = 33/63 (52%), Positives = 39/63 (61%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F PFKKN+DIN TK SH GMN H L E L + LIE + W+CEAF+VNK
Sbjct: 1218 FFISLPFKKNEDINPTKASHLGMNPDHYTLALEEVNLLQKEGLIEKTTSPWACEAFYVNK 1277
Query: 277 RSE 285
R+E
Sbjct: 1278 RAE 1280
Score = 43.9 bits (102), Expect(2) = 3e-16
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 8 IQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
I+ + SCA SH+EFLTKCS PL +N DFF
Sbjct: 1188 IKEEITKTSCASSHSEFLTKCSSPLWQNPDFF 1219
>ref|XP_006405939.1| hypothetical protein EUTSA_v10028029mg [Eutrema salsugineum]
gi|557107077|gb|ESQ47392.1| hypothetical protein
EUTSA_v10028029mg [Eutrema salsugineum]
Length = 1145
Score = 65.5 bits (158), Expect(2) = 6e-16
Identities = 32/63 (50%), Positives = 38/63 (60%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F PFKKN+DIN TK SH GM H L E L + LIE + W+CEAF+VNK
Sbjct: 1041 FFISLPFKKNEDINPTKASHPGMKPDHYTLALEEVNPLQKEGLIEKTTSPWACEAFYVNK 1100
Query: 277 RSE 285
R+E
Sbjct: 1101 RAE 1103
Score = 43.9 bits (102), Expect(2) = 6e-16
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 8 IQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
I+ + SCA SH+EFLTKCS PL +N DFF
Sbjct: 1011 IKEEITKTSCASSHSEFLTKCSSPLWQNPDFF 1042
>ref|XP_006398030.1| hypothetical protein EUTSA_v10001272mg [Eutrema salsugineum]
gi|557099112|gb|ESQ39483.1| hypothetical protein
EUTSA_v10001272mg [Eutrema salsugineum]
Length = 828
Score = 68.2 bits (165), Expect(2) = 6e-16
Identities = 34/63 (53%), Positives = 39/63 (61%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F PFKKN+DIN TK SH GMN H L E L + LIE + WSCEAF+VNK
Sbjct: 705 FFISLPFKKNEDINPTKASHPGMNPDHYTLALEEVNLLQKEGLIEKTTSPWSCEAFYVNK 764
Query: 277 RSE 285
R+E
Sbjct: 765 RAE 767
Score = 41.2 bits (95), Expect(2) = 6e-16
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 8 IQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
I+ + SCA SH+ FLTKCS PL +N DFF
Sbjct: 675 IKEEITKTSCASSHSGFLTKCSSPLWQNPDFF 706
>ref|XP_006409622.1| hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
gi|557110784|gb|ESQ51075.1| hypothetical protein
EUTSA_v10023188mg, partial [Eutrema salsugineum]
Length = 1101
Score = 64.7 bits (156), Expect(2) = 1e-15
Identities = 31/63 (49%), Positives = 39/63 (61%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F PFKKN+DIN TK SH GMN H L E L + LI+ + W+CEAF+VNK
Sbjct: 815 FFISLPFKKNEDINPTKASHPGMNPNHYTLALEEVNLLQKEGLIKTTTSPWACEAFYVNK 874
Query: 277 RSE 285
++E
Sbjct: 875 KAE 877
Score = 43.5 bits (101), Expect(2) = 1e-15
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 8 IQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
I+ + SCA SH+EFLTKCS PL +N DFF
Sbjct: 785 IKEEITKTSCASSHSEFLTKCSSPLWKNPDFF 816
>ref|XP_006405940.1| hypothetical protein EUTSA_v10028344mg [Eutrema salsugineum]
gi|557107078|gb|ESQ47393.1| hypothetical protein
EUTSA_v10028344mg [Eutrema salsugineum]
Length = 1508
Score = 61.2 bits (147), Expect(2) = 3e-15
Identities = 30/62 (48%), Positives = 37/62 (59%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F PFKKN+DIN TK SH GM H L E L + LIE + W+CEAF+VN+
Sbjct: 802 FFISLPFKKNEDINPTKASHPGMKPDHYTLALEEVNLLQKEGLIEKTTSPWACEAFYVNQ 861
Query: 277 RS 282
R+
Sbjct: 862 RA 863
Score = 45.8 bits (107), Expect(2) = 3e-15
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 8 IQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
I+ + SCA SH+EFLTKCS PL +NSDFF
Sbjct: 772 IKEEITKTSCASSHSEFLTKCSSPLWQNSDFF 803
>ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1645
Score = 75.1 bits (183), Expect = 9e-12
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F Q PFK N+DIN TK +H GM+ L L EC +LLQ LIEP+ F+W+C+AF+V K
Sbjct: 1271 FFIQLPFKLNEDINPTKATHPGMSPSDLALAREECNQLLQQGLIEPTKFEWACQAFYVEK 1330
Query: 277 RSE 285
RS+
Sbjct: 1331 RSK 1333
>ref|XP_002318395.1| predicted protein [Populus trichocarpa]
Length = 1497
Score = 75.1 bits (183), Expect = 9e-12
Identities = 36/63 (57%), Positives = 42/63 (66%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F + PFK N+DIN TK SHSGMN +H L EC L LIEP+ WSCEAF+VNK
Sbjct: 1226 FFIKLPFKLNEDINPTKASHSGMNPEHKLLAQEECAHLQAQGLIEPTDSLWSCEAFYVNK 1285
Query: 277 RSE 285
R+E
Sbjct: 1286 RAE 1288
>ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 803
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F Q PFK N+DIN TK +H GM+ L LV EC +LLQ LIE + F+W+C+AF+V K
Sbjct: 402 FFVQLPFKLNEDINPTKATHPGMSPSDLALVREECNQLLQQGLIELTKFEWACQAFYVEK 461
Query: 277 RSE 285
RSE
Sbjct: 462 RSE 464
>ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1951
Score = 73.6 bits (179), Expect = 3e-11
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F Q PFK N+DIN TK +H GM+ L L EC +LLQ LIEP+ +W+C+AF+V K
Sbjct: 1326 FFVQLPFKLNEDINPTKATHPGMSPSDLALAREECNQLLQQGLIEPTKSEWACQAFYVEK 1385
Query: 277 RSE 285
RSE
Sbjct: 1386 RSE 1388
>ref|XP_004491299.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 894
Score = 73.6 bits (179), Expect = 3e-11
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F Q PFK N+DIN TK +H GM+ L L EC +LLQ LIEP+ +W+C+AF+V K
Sbjct: 536 FFVQLPFKLNEDINPTKATHPGMSPSDLALAREECNQLLQQGLIEPTKSEWACQAFYVEK 595
Query: 277 RSE 285
RSE
Sbjct: 596 RSE 598
>ref|XP_006376643.1| hypothetical protein POPTR_0012s01890g [Populus trichocarpa]
gi|550326181|gb|ERP54440.1| hypothetical protein
POPTR_0012s01890g [Populus trichocarpa]
Length = 1153
Score = 54.3 bits (129), Expect(2) = 3e-11
Identities = 25/44 (56%), Positives = 29/44 (65%)
Frame = +1
Query: 154 HSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNKRSE 285
HSGMN +H L EC L LIEP+ WSCEAF+VNKR+E
Sbjct: 874 HSGMNPEHKLLAQEECAHLQAQGLIEPTDSLWSCEAFYVNKRAE 917
Score = 39.3 bits (90), Expect(2) = 3e-11
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2
Query: 8 IQHLLIHQSCAESHTEFLTKCSHPLGEN 91
I+ +I SC+ SH EFL KCSHPL +N
Sbjct: 844 IKAQIIQHSCSNSHQEFLAKCSHPLWQN 871
>ref|XP_004511013.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 335
Score = 72.0 bits (175), Expect = 8e-11
Identities = 33/63 (52%), Positives = 44/63 (69%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNK 276
F Q PFK N+DIN TK +H GM+ +L L EC +LL+ LIEP+ +W+C+AF+V K
Sbjct: 144 FFVQLPFKLNEDINPTKATHPGMSPSNLALPREECNQLLKQGLIEPTKSEWACQAFYVEK 203
Query: 277 RSE 285
RSE
Sbjct: 204 RSE 206
>gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1701
Score = 70.1 bits (170), Expect = 3e-10
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Frame = +1
Query: 1 LTDTTPSYSSILC*ITHRIP-----YQMLTPSRGKL*FLHQTPFKKNKDINSTKISHSGM 165
L++T PSY + + P + P F + PFK N+DIN TK +H GM
Sbjct: 1177 LSETPPSYQDVSTKLLSFCPESHSEFTHPNPLWKNQSFFVKLPFKLNEDINPTKATHPGM 1236
Query: 166 NQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNKRSE 285
+ L L EC +LL LIEP+ QW+C+AF+V K SE
Sbjct: 1237 SPSDLLLAQQECSQLLAQGLIEPTTSQWACQAFYVEKHSE 1276
>gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1799
Score = 70.1 bits (170), Expect = 3e-10
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Frame = +1
Query: 1 LTDTTPSYSSILC*ITHRIP-----YQMLTPSRGKL*FLHQTPFKKNKDINSTKISHSGM 165
L++T PSY + + P + P F + PFK N+DIN TK +H GM
Sbjct: 1275 LSETPPSYQDVSTKLLSFCPESHSEFTHPNPLWKNQSFFVKLPFKLNEDINPTKATHPGM 1334
Query: 166 NQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNKRSE 285
+ L L EC +LL LIEP+ QW+C+AF+V K SE
Sbjct: 1335 SPSDLLLAQQECSQLLAQGLIEPTTSQWACQAFYVEKHSE 1374
>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
gi|565672276|gb|AHC13194.1| polyprotein [Citrus
endogenous pararetrovirus]
Length = 1812
Score = 70.1 bits (170), Expect = 3e-10
Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Frame = +1
Query: 1 LTDTTPSYSSILC*ITHRIP-----YQMLTPSRGKL*FLHQTPFKKNKDINSTKISHSGM 165
L++T PSY + + P + P F + PFK N+DIN TK +H GM
Sbjct: 1288 LSETPPSYQDVSTKLLSFCPESHSEFTHPNPLWKNQSFFVKLPFKLNEDINPTKATHPGM 1347
Query: 166 NQKHLQLVAIECLELLQSNLIEPSYFQWSCEAFFVNKRSE 285
+ L L EC +LL LIEP+ QW+C+AF+V K SE
Sbjct: 1348 SPSDLLLAQQECSQLLAQGLIEPTTSQWACQAFYVEKHSE 1387
>gb|EOX92650.1| Polyprotein, putative [Theobroma cacao]
Length = 220
Score = 54.3 bits (129), Expect(2) = 3e-10
Identities = 28/53 (52%), Positives = 32/53 (60%)
Frame = +1
Query: 97 FLHQTPFKKNKDINSTKISHSGMNQKHLQLVAIECLELLQSNLIEPSYFQWSC 255
F + PFK N+DIN TK + SGMN H L EC ELLQ LIE S Q +C
Sbjct: 168 FFVKLPFKHNEDINPTKATPSGMNPDHQNLAEQECKELLQQGLIEASNSQRAC 220
Score = 35.8 bits (81), Expect(2) = 3e-10
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 8 IQHLLIHQSCAESHTEFLTKCSHPLGENSDFF 103
I L ++CA SH EFL KC +P +N +FF
Sbjct: 138 IVETLRQKACANSHLEFLHKCENPFWKNPEFF 169