BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00027706
         (815 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAO49734.1| nuclear pore complex protein Nup98a [Nicotiana b...    63   1e-07

>dbj|BAO49734.1| nuclear pore complex protein Nup98a [Nicotiana benthamiana]
          Length = 1023

 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 54/162 (33%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
 Frame = +2

Query: 347 SGSSTVFGPSNQSTLGNNGTPFSNMHNSVTHACQCAXXXXXXXXXXXXFTIPAFSSPIAP 526
           + S+  FG ++    GN G+PF    NS                     + PAF +  +P
Sbjct: 184 TSSTPAFGSTSNPAFGNTGSPFG-ASNSPMFGSSTPGFGASSTPAFGATSSPAFGATSSP 242

Query: 527 SF---TTFKFGK-SDGHESLNSKTIFDQPNSTFIANKKPGSFTS--GPRNTKSTVKTEGF 688
           +F   TT  FG  S    S  S   F Q  S F  +   G+ TS  G + + +T  + GF
Sbjct: 243 AFGATTTPAFGAPSTPSFSFGSAPAFGQSTSAF-GSSPFGTSTSTFGAQTSAATFGSPGF 301

Query: 689 FQSADKCQYRGSRVASYVGTPEVDGIFTHQTSNKVASISAMP 814
            QSA   Q  G+RVA+Y  TPE D     Q + K+ SISAMP
Sbjct: 302 AQSAVGGQRGGTRVAAYQATPEADSGSGTQPAGKLESISAMP 343