BLASTX nr result

ID: Rauwolfia21_contig00027427 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rauwolfia21_contig00027427
         (330 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36104.3| unnamed protein product [Vitis vinifera]               77   3e-12
ref|XP_002279039.1| PREDICTED: uncharacterized WD repeat-contain...    77   3e-12
ref|XP_004252499.1| PREDICTED: outer row dynein assembly protein...    69   9e-10
ref|XP_006359483.1| PREDICTED: myosin heavy chain kinase B-like ...    67   3e-09
ref|XP_004305279.1| PREDICTED: probable E3 ubiquitin ligase comp...    60   3e-07

>emb|CBI36104.3| unnamed protein product [Vitis vinifera]
          Length = 923

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 50/88 (56%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
 Frame = -3

Query: 253 SPEILSTPSFAIR--THDRQFPRSISHKEPSFPEVPCTPPRLSSNSLAAPRLY-LSQPSS 83
           SP     PSFAIR  TH+R F RSIS KEPSF E+P TP RLSS SL++P  +  S PSS
Sbjct: 7   SPNSPQCPSFAIRDETHNR-FLRSISTKEPSFSELPHTPSRLSSGSLSSPCHHTASLPSS 65

Query: 82  PRLSFTSPKPR-DHTDIHTIYRCISSVL 2
           PR SF   K + DH  + T +RC+SSVL
Sbjct: 66  PRHSFAPTKLKLDHDHLPTSHRCVSSVL 93


>ref|XP_002279039.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466
           [Vitis vinifera]
          Length = 427

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 50/88 (56%), Positives = 59/88 (67%), Gaps = 4/88 (4%)
 Frame = -3

Query: 253 SPEILSTPSFAIR--THDRQFPRSISHKEPSFPEVPCTPPRLSSNSLAAPRLY-LSQPSS 83
           SP     PSFAIR  TH+R F RSIS KEPSF E+P TP RLSS SL++P  +  S PSS
Sbjct: 7   SPNSPQCPSFAIRDETHNR-FLRSISTKEPSFSELPHTPSRLSSGSLSSPCHHTASLPSS 65

Query: 82  PRLSFTSPKPR-DHTDIHTIYRCISSVL 2
           PR SF   K + DH  + T +RC+SSVL
Sbjct: 66  PRHSFAPTKLKLDHDHLPTSHRCVSSVL 93


>ref|XP_004252499.1| PREDICTED: outer row dynein assembly protein 16 homolog [Solanum
           lycopersicum]
          Length = 453

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 16/106 (15%)
 Frame = -3

Query: 271 VEPADSSPEILSTPSFAIR------THDRQFPRSISHKEP-SFPE-VPCTPPRLSSNSLA 116
           +EP +S     S PSFAIR       H+  F RSIS KEP +F E +  TPPR+S+++L 
Sbjct: 7   LEPPNSLSS--SAPSFAIRPNNNNNNHNNSFLRSISTKEPLNFSEQLAYTPPRISTSAL- 63

Query: 115 APRLYLSQPSSPRLSFTSPKPR-------DHTDIH-TIYRCISSVL 2
            P    SQPS+PRLSFT   P        DH D H T YRCISSVL
Sbjct: 64  -PSNTYSQPSTPRLSFTLNNPSTKSVDGDDHPDFHQTSYRCISSVL 108


>ref|XP_006359483.1| PREDICTED: myosin heavy chain kinase B-like [Solanum tuberosum]
          Length = 453

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 51/106 (48%), Positives = 62/106 (58%), Gaps = 16/106 (15%)
 Frame = -3

Query: 271 VEPADSSPEILSTPSFAIRTHDRQ-------FPRSISHKEP-SFPE-VPCTPPRLSSNSL 119
           +EP +S     S PSFAIR  +         F RS+S KEP +F E +P +PPRLS+++L
Sbjct: 7   LEPPNSLSS--SAPSFAIRPDNNNNNHLNNSFLRSLSTKEPLNFSEQLPYSPPRLSTSAL 64

Query: 118 AAPRLYLSQPSSPRLSFTSPKP------RDHTDIH-TIYRCISSVL 2
             P    SQPS+PRLSFT   P       DH D H T YRCISSVL
Sbjct: 65  --PSNTYSQPSTPRLSFTLNNPSTKSVDEDHPDFHQTSYRCISSVL 108


>ref|XP_004305279.1| PREDICTED: probable E3 ubiquitin ligase complex SCF subunit
           sconB-like [Fragaria vesca subsp. vesca]
          Length = 440

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 45/100 (45%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
 Frame = -3

Query: 280 MASVEPADSSPEILSTPSFAIRTHD--RQFPRSISHKEPSFPEVPCTPPRLSSNSLA--- 116
           MAS + + +S  I  TPSFA   +     F RSIS KEPSF + P TPPR S+N ++   
Sbjct: 1   MASQDYSPNSSPI--TPSFATDQNKFFTGFTRSISTKEPSFSQFPYTPPRRSNNDVSPSF 58

Query: 115 --APRLYLSQPSSPRLSFTSPKPRDHTDIHTIYRCISSVL 2
                L+ S  SSPR       P  H D  T YRCISSVL
Sbjct: 59  SQTQSLHASPTSSPRFI-----PLKHPDHLTAYRCISSVL 93


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