BLASTX nr result
ID: Rauwolfia21_contig00026141
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00026141
(274 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 86 4e-15
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 84 2e-14
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 81 1e-13
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 80 2e-13
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 80 2e-13
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 80 3e-13
ref|XP_004157306.1| PREDICTED: probable RNA-dependent RNA polyme... 80 3e-13
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 80 3e-13
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 79 8e-13
ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutr... 79 8e-13
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 78 1e-12
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana] 78 1e-12
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 77 2e-12
gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana] 77 2e-12
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ... 77 2e-12
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 75 9e-12
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 75 1e-11
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 74 3e-11
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 74 3e-11
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 73 3e-11
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 86.3 bits (212), Expect = 4e-15
Identities = 48/101 (47%), Positives = 61/101 (60%), Gaps = 10/101 (9%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKHSVL----------KIAREGILVGLRRYRFFAFKDESKDVKKKD 125
LGDENVL VKF K+S +IA+ GI++GLRRY+FF FKD K+ KKKD
Sbjct: 243 LGDENVLTVKFADVPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKD 302
Query: 124 RTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
+ K VKC+F+R DS A CD YIF+ +SI+E
Sbjct: 303 LSTK-------KVKCYFIRTDSTASCDMENPYIFTGKSIHE 336
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 84.0 bits (206), Expect = 2e-14
Identities = 46/89 (51%), Positives = 61/89 (68%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKHSVLKIAREGILVGLRRYRFFAFKDESKDVKKKDRTEKDKSSTF 95
LGD+NVL+VKFV E I EGILVGLRRYRFF +KD+ K+ KK K K+
Sbjct: 267 LGDDNVLLVKFV-EDTSCANMIVEEGILVGLRRYRFFVYKDD-KEKKKSPAMMKKKT--- 321
Query: 94 AAVKCFFVRFDSLAPCDGSESYIFSSRSI 8
A++KC+FVRF+S+ C+ SY+FS++ I
Sbjct: 322 ASLKCYFVRFESIETCNDGGSYVFSTKRI 350
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 81.3 bits (199), Expect = 1e-13
Identities = 48/101 (47%), Positives = 58/101 (57%), Gaps = 10/101 (9%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKHSVLK----------IAREGILVGLRRYRFFAFKDESKDVKKKD 125
LGDENVL VKF K+S IA+ GI+VGLRRY+FF FKD KD K KD
Sbjct: 247 LGDENVLTVKFANVQKNSSTYCSDSYFTYKGIAKNGIMVGLRRYKFFVFKDGGKDDKNKD 306
Query: 124 RTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
+ K KC+F+R DS A D + YIFS +SI+E
Sbjct: 307 VSTK-------RAKCYFIRTDSTASIDMEKPYIFSGKSIHE 340
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 80.5 bits (197), Expect = 2e-13
Identities = 44/91 (48%), Positives = 57/91 (62%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKHSVLKIAREGILVGLRRYRFFAFKDESKDVKKKDRTEKDKSSTF 95
LGDENVLIVKF +I + GILVGLRRYRFF +KD+ K R+ KDK
Sbjct: 349 LGDENVLIVKFEQNTPGCPEEIVQNGILVGLRRYRFFVYKDDG-----KKRSSKDKEEKI 403
Query: 94 AAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
+VKC+FVR +SL P + E+YI + ++E
Sbjct: 404 DSVKCYFVRMESLNPYE-KETYILRDKMVHE 433
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 80.5 bits (197), Expect = 2e-13
Identities = 45/91 (49%), Positives = 59/91 (64%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKHSVLKIAREGILVGLRRYRFFAFKDESKDVKKKDRTEKDKSSTF 95
LGDENVLIVKF +I + GILVGLRRYRFF +KD+ K + KD+ EK S
Sbjct: 293 LGDENVLIVKFEQNTPGCPEEIVQNGILVGLRRYRFFVYKDDGKKRRLKDKEEKIDS--- 349
Query: 94 AAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
VKC+FVR +SL P + +E+YI + ++E
Sbjct: 350 --VKCYFVRMESLNPYE-NETYILHDKMVHE 377
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 80.1 bits (196), Expect = 3e-13
Identities = 51/103 (49%), Positives = 59/103 (57%), Gaps = 12/103 (11%)
Frame = -1
Query: 274 LGDENVLIVKF---------VGEGKH---SVLKIAREGILVGLRRYRFFAFKDESKDVKK 131
LGD+NVL+VKF +G H KI REGILVGLRRY FF FKD K+ KK
Sbjct: 223 LGDDNVLMVKFAEEEAERFSIGSRDHYYAGYSKICREGILVGLRRYCFFVFKDGGKEEKK 282
Query: 130 KDRTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
KD T + VKCFF+R S A D + SYI S R+I E
Sbjct: 283 KDPTS-------SPVKCFFIRIHSDACIDQNVSYILSGRTISE 318
>ref|XP_004157306.1| PREDICTED: probable RNA-dependent RNA polymerase 4-like [Cucumis
sativus]
Length = 560
Score = 80.1 bits (196), Expect = 3e-13
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 12/103 (11%)
Frame = -1
Query: 274 LGDENVLIVKFV------------GEGKHSVLKIAREGILVGLRRYRFFAFKDESKDVKK 131
LGD+NVL+VKF G ++ KIAR+GIL+GLRRY FF FKD K+
Sbjct: 320 LGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKE--- 376
Query: 130 KDRTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
EK K+ T +AVKC+FVR +S A D E Y S+R+++E
Sbjct: 377 ----EKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFE 415
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 80.1 bits (196), Expect = 3e-13
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 12/103 (11%)
Frame = -1
Query: 274 LGDENVLIVKFV------------GEGKHSVLKIAREGILVGLRRYRFFAFKDESKDVKK 131
LGD+NVL+VKF G ++ KIAR+GIL+GLRRY FF FKD K+
Sbjct: 295 LGDDNVLMVKFAEDKSDTPLSNHSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKE--- 351
Query: 130 KDRTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
EK K+ T +AVKC+FVR +S A D E Y S+R+++E
Sbjct: 352 ----EKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFE 390
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 78.6 bits (192), Expect = 8e-13
Identities = 47/101 (46%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKHSVL----------KIAREGILVGLRRYRFFAFKDESKDVKKKD 125
LGDENVL VKF K+S +IA+ GI+VGLRRY+FF FKD K KKKD
Sbjct: 251 LGDENVLTVKFADVQKNSSTYSNDRYSAYKRIAKNGIMVGLRRYQFFVFKDVGKAEKKKD 310
Query: 124 RTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
+ VKC+F+R DS A D ++YIFS ++I E
Sbjct: 311 FSTN-------GVKCYFIRTDSTAANDMGKAYIFSGKTINE 344
>ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutrema salsugineum]
gi|557110063|gb|ESQ50360.1| hypothetical protein
EUTSA_v10001896mg [Eutrema salsugineum]
Length = 988
Score = 78.6 bits (192), Expect = 8e-13
Identities = 49/100 (49%), Positives = 60/100 (60%), Gaps = 9/100 (9%)
Frame = -1
Query: 274 LGDENVLIVKFV---GEGKH-----SVLK-IAREGILVGLRRYRFFAFKDESKDVKKKDR 122
LGD+NVL VKF GE + S K IA+ GI+VGLRRY+FF FKD K+ KKKD
Sbjct: 225 LGDDNVLTVKFADVPGEETYCNDLYSTYKGIAKNGIMVGLRRYQFFVFKDGGKEEKKKDF 284
Query: 121 TEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
+ K VKC+F+R DS A D Y FS +SI+E
Sbjct: 285 STK-------GVKCYFIRTDSTASIDLQNPYFFSGKSIHE 317
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 78.2 bits (191), Expect = 1e-12
Identities = 47/100 (47%), Positives = 59/100 (59%), Gaps = 9/100 (9%)
Frame = -1
Query: 274 LGDENVLIVKF--------VGEGKHSVLK-IAREGILVGLRRYRFFAFKDESKDVKKKDR 122
LGD+NVL VKF +S K IA+ GI+VGLRRYRFF FKD K+ KKKD
Sbjct: 244 LGDDNVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDV 303
Query: 121 TEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
+ K VKC+F+R DS A D YIF+ +S++E
Sbjct: 304 STK-------GVKCYFIRTDSTASIDMQNPYIFAGKSMHE 336
>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 78.2 bits (191), Expect = 1e-12
Identities = 47/100 (47%), Positives = 59/100 (59%), Gaps = 9/100 (9%)
Frame = -1
Query: 274 LGDENVLIVKF--------VGEGKHSVLK-IAREGILVGLRRYRFFAFKDESKDVKKKDR 122
LGD+NVL VKF +S K IA+ GI+VGLRRYRFF FKD K+ KKKD
Sbjct: 244 LGDDNVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDV 303
Query: 121 TEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
+ K VKC+F+R DS A D YIF+ +S++E
Sbjct: 304 STK-------GVKCYFIRTDSTASIDMQNPYIFAGKSMHE 336
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 77.4 bits (189), Expect = 2e-12
Identities = 46/101 (45%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKHSVLK----------IAREGILVGLRRYRFFAFKDESKDVKKKD 125
LGD+NVL VKF K S IA+ GI++GLRRY+FF FKD K+ KKKD
Sbjct: 239 LGDDNVLTVKFADVQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKD 298
Query: 124 RTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
+ K VKC+F+R DS A D YI + +SIYE
Sbjct: 299 LSTK-------KVKCYFIRTDSTAFYDMQNPYILTGKSIYE 332
>gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 77.4 bits (189), Expect = 2e-12
Identities = 46/101 (45%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKHSVLK----------IAREGILVGLRRYRFFAFKDESKDVKKKD 125
LGD+NVL VKF K S IA+ GI++GLRRY+FF FKD K+ KKKD
Sbjct: 209 LGDDNVLTVKFADVQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVFKDGGKEEKKKD 268
Query: 124 RTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
+ K VKC+F+R DS A D YI + +SIYE
Sbjct: 269 LSTK-------KVKCYFIRTDSTAFYDMQNPYILTGKSIYE 302
>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus
vulgaris]
Length = 689
Score = 77.0 bits (188), Expect = 2e-12
Identities = 45/103 (43%), Positives = 59/103 (57%), Gaps = 12/103 (11%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKHSVL------------KIAREGILVGLRRYRFFAFKDESKDVKK 131
LGD+NVL+VKF G + + K +EGI VGLR YRFF FKD K+ KK
Sbjct: 213 LGDDNVLLVKFAENGIANNIRTSAEEAYRLYGKFGKEGINVGLRLYRFFVFKDGGKEEKK 272
Query: 130 KDRTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
KD T ++VKC+FVR S DGS +YI S++++ E
Sbjct: 273 KDPTS-------SSVKCYFVRMQSCWSIDGSANYILSNKTVSE 308
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 75.1 bits (183), Expect = 9e-12
Identities = 48/103 (46%), Positives = 60/103 (58%), Gaps = 12/103 (11%)
Frame = -1
Query: 274 LGDENVLIVKF---VGEGKHSVLK---------IAREGILVGLRRYRFFAFKDESKDVKK 131
LGD+NVL+VKF V E + +K +AREGILVGLRRY+FF FKD
Sbjct: 63 LGDDNVLMVKFSDVVTERVPTAIKDNNYANYSKVAREGILVGLRRYQFFVFKDGG----- 117
Query: 130 KDRTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
EK K+ T + VKC+F+ S A D SE Y FS+R I+E
Sbjct: 118 --NKEKKKNPTSSPVKCYFICVGSNAAIDRSEDYKFSNRKIHE 158
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 74.7 bits (182), Expect = 1e-11
Identities = 46/102 (45%), Positives = 57/102 (55%), Gaps = 11/102 (10%)
Frame = -1
Query: 274 LGDENVLIVKFVGEGKH-----------SVLKIAREGILVGLRRYRFFAFKDESKDVKKK 128
LGD+NVL+VKF E + +K+AREGILVGLRRYRFF FKD +
Sbjct: 652 LGDDNVLMVKFAKEEVQRGQSGACHNYPTYMKVAREGILVGLRRYRFFVFKDGGNE---- 707
Query: 127 DRTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
EK K+ T + VKC+FVR S A D Y S ++YE
Sbjct: 708 ---EKKKNPTSSPVKCYFVRVASDAAIDKGVYYRLSHMTMYE 746
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 73.6 bits (179), Expect = 3e-11
Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 12/103 (11%)
Frame = -1
Query: 274 LGDENVLIVKFVGE-GKH-----------SVLKIAREGILVGLRRYRFFAFKDESKDVKK 131
LGD+N+L+VKF E G H +IAREGILVGLR Y FF FKD K+ KK
Sbjct: 252 LGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKK 311
Query: 130 KDRTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
KD + + VKC+FVR +S A D YI S ++++E
Sbjct: 312 KD-------PSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHE 347
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 73.6 bits (179), Expect = 3e-11
Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 12/103 (11%)
Frame = -1
Query: 274 LGDENVLIVKFVGE-GKH-----------SVLKIAREGILVGLRRYRFFAFKDESKDVKK 131
LGD+N+L+VKF E G H +IAREGILVGLR Y FF FKD K+ KK
Sbjct: 254 LGDDNILLVKFDEELGGHRSSNNWNDSYSKYNEIAREGILVGLRCYHFFVFKDGGKEEKK 313
Query: 130 KDRTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
KD + + VKC+FVR +S A D YI S ++++E
Sbjct: 314 KD-------PSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHE 349
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 73.2 bits (178), Expect = 3e-11
Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Frame = -1
Query: 274 LGDENVLIVKFVGE-------------GKHSVLKIAREGILVGLRRYRFFAFKDESKDVK 134
LGD+NVL+VKF + KH K +EG+ VGLR YRFF FK K+ K
Sbjct: 238 LGDDNVLLVKFAEDQYARKSETSAQKAAKHYE-KFGKEGLRVGLRLYRFFVFKVGGKEEK 296
Query: 133 KKDRTEKDKSSTFAAVKCFFVRFDSLAPCDGSESYIFSSRSIYE 2
KKD T ++VKC+FVR +S D ESYI S+R+++E
Sbjct: 297 KKDPTT-------SSVKCYFVRTESSCSTDERESYILSNRTMFE 333