BLASTX nr result
ID: Rauwolfia21_contig00026140
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00026140
(222 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 96 5e-18
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 94 2e-17
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera] 94 2e-17
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 92 5e-17
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 89 5e-16
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 89 8e-16
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 87 3e-15
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ... 86 4e-15
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 85 9e-15
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 85 9e-15
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 84 1e-14
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 83 4e-14
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 83 4e-14
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 83 4e-14
ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Popu... 83 4e-14
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 81 1e-13
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 81 1e-13
ref|XP_002883965.1| RNA-dependent RNA polymerase family protein ... 81 2e-13
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 80 2e-13
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 79 5e-13
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 95.9 bits (237), Expect = 5e-18
Identities = 44/72 (61%), Positives = 53/72 (73%)
Frame = +3
Query: 6 PMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTKT 185
PM FES IWN YG H CE + R + DW+SG+TH Y+CHV+ DGSY+FKGP L +T
Sbjct: 286 PMSHFESYIWNKYG-HLCEH-NKRVQYLDWDSGRTHLYHCHVHSDGSYTFKGPYLKAERT 343
Query: 186 HLQRELGDENVL 221
HLQ+ LGDENVL
Sbjct: 344 HLQQSLGDENVL 355
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 94.0 bits (232), Expect = 2e-17
Identities = 42/73 (57%), Positives = 53/73 (72%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
LPM FE+++WN G+ ++ D R+ DW+S KTH Y+CHV DGSY FKGP LN T+
Sbjct: 140 LPMGVFETEVWNNLGRKFIKEED-RQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTR 198
Query: 183 THLQRELGDENVL 221
THLQR LGDEN+L
Sbjct: 199 THLQRVLGDENIL 211
>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 94.0 bits (232), Expect = 2e-17
Identities = 42/73 (57%), Positives = 53/73 (72%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
LPM FE+++WN G+ ++ D R+ DW+S KTH Y+CHV DGSY FKGP LN T+
Sbjct: 503 LPMGVFETEVWNNLGRKFIKEED-RQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTR 561
Query: 183 THLQRELGDENVL 221
THLQR LGDEN+L
Sbjct: 562 THLQRVLGDENIL 574
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 92.4 bits (228), Expect = 5e-17
Identities = 43/72 (59%), Positives = 51/72 (70%)
Frame = +3
Query: 6 PMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTKT 185
PM FES IWN YG H CE + R + DW+SG+TH Y+CHV+ D SY+FKGP L +T
Sbjct: 230 PMSHFESYIWNKYG-HLCEH-NKRVQYLDWDSGRTHLYHCHVHSDRSYTFKGPYLKAERT 287
Query: 186 HLQRELGDENVL 221
HLQ LGDENVL
Sbjct: 288 HLQHSLGDENVL 299
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 89.4 bits (220), Expect = 5e-16
Identities = 40/73 (54%), Positives = 52/73 (71%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
LPM A+E+ +W++ G+ C + D R W+SGKTH+Y CHV DGSY+FKGP L +T
Sbjct: 183 LPMVAYEAAVWDSLGRKFCPQTDER--VLQWDSGKTHYYQCHVAPDGSYTFKGPLLESTG 240
Query: 183 THLQRELGDENVL 221
THL + LGDENVL
Sbjct: 241 THLHKVLGDENVL 253
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 88.6 bits (218), Expect = 8e-16
Identities = 40/73 (54%), Positives = 50/73 (68%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
LPM A+E+ +W+ G+ C + D R W+SGKTH+Y CHV DGSY+FKGP L T
Sbjct: 179 LPMVAYEAAVWDRLGRRYCPQTD--RRMLQWDSGKTHYYQCHVAPDGSYTFKGPLLEHTG 236
Query: 183 THLQRELGDENVL 221
THL + LGDENVL
Sbjct: 237 THLHKVLGDENVL 249
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 86.7 bits (213), Expect = 3e-15
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 8/81 (9%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFK-------- 158
LPM FE+++WN G+ ++ D R+ DW+S KTH Y+CHV DGSY FK
Sbjct: 140 LPMGVFETEVWNNLGRKFIKEED-RQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLN 198
Query: 159 GPCLNTTKTHLQRELGDENVL 221
GP LN T+THLQR LGDEN+L
Sbjct: 199 GPYLNKTRTHLQRVLGDENIL 219
>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus
vulgaris]
Length = 689
Score = 86.3 bits (212), Expect = 4e-15
Identities = 38/73 (52%), Positives = 47/73 (64%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
LPM FE IW +G+ R+ DW+SG+TH Y C+V DGS FKGP L +T+
Sbjct: 147 LPMATFEKTIWEAFGKDHIYSQSDRQVYVDWDSGRTHVYQCYVSSDGSLRFKGPILQSTQ 206
Query: 183 THLQRELGDENVL 221
THLQR LGD+NVL
Sbjct: 207 THLQRSLGDDNVL 219
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 85.1 bits (209), Expect = 9e-15
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
L M FES++W G+ + + D RR W+SGKTH Y+CH+ G+ +FKGP LN T+
Sbjct: 187 LQMARFESEVWEKLGRKNISQED-RRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTR 245
Query: 183 THLQRELGDENVL 221
THLQRELGD+N+L
Sbjct: 246 THLQRELGDDNIL 258
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 85.1 bits (209), Expect = 9e-15
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
L M FES++W G+ + + D RR W+SGKTH Y+CH+ G+ +FKGP LN T+
Sbjct: 189 LQMARFESEVWEKLGRKNISQED-RRMSLKWDSGKTHMYHCHISTKGNCTFKGPYLNQTR 247
Query: 183 THLQRELGDENVL 221
THLQRELGD+N+L
Sbjct: 248 THLQRELGDDNIL 260
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 84.3 bits (207), Expect = 1e-14
Identities = 39/73 (53%), Positives = 49/73 (67%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
L M FES+IWN +G+ + D R + DW KTH YYCH+ +G +FKGP LNT +
Sbjct: 202 LSMTDFESEIWNAFGKAYYAESD-RSKYVDWNCRKTHIYYCHIKQNGQCTFKGPYLNTAR 260
Query: 183 THLQRELGDENVL 221
THLQR LGD+NVL
Sbjct: 261 THLQRALGDDNVL 273
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 82.8 bits (203), Expect = 4e-14
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = +3
Query: 3 LPMDAFESQIWNTYG-QHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTT 179
LPM+ FES+IW+ +G + K + R + DW+SGK H Y+CHV DGSY FKGP L+
Sbjct: 55 LPMETFESKIWDAFGCRRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQ 114
Query: 180 KTHLQRELGDENVL 221
+ LQR LGD+N+L
Sbjct: 115 RNVLQRTLGDDNIL 128
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 82.8 bits (203), Expect = 4e-14
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = +3
Query: 3 LPMDAFESQIWNTYG-QHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTT 179
LPM FES+IW +G + K + R + DW+SGKTH Y+CHV DGSY FKGP L+
Sbjct: 55 LPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKL 114
Query: 180 KTHLQRELGDENVL 221
+ LQR LGD+N+L
Sbjct: 115 RNVLQRTLGDDNIL 128
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 82.8 bits (203), Expect = 4e-14
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = +3
Query: 3 LPMDAFESQIWNTYG-QHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTT 179
LPM FES+IW +G + K + R + DW+SGKTH Y+CHV DGSY FKGP L+
Sbjct: 77 LPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKL 136
Query: 180 KTHLQRELGDENVL 221
+ LQR LGD+N+L
Sbjct: 137 RNVLQRTLGDDNIL 150
>ref|XP_002310025.1| hypothetical protein POPTRDRAFT_562704 [Populus trichocarpa]
Length = 305
Score = 82.8 bits (203), Expect = 4e-14
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = +3
Query: 3 LPMDAFESQIWNTYG-QHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTT 179
LPM FES+IW +G + K + R + DW+SGKTH Y+CHV DGSY FKGP L+
Sbjct: 188 LPMRTFESKIWEAFGCRRDYIKEEDRVKYLDWDSGKTHIYHCHVDPDGSYRFKGPYLSKQ 247
Query: 180 KTHLQRELGDENVL 221
+ LQR LGD+N+L
Sbjct: 248 RNVLQRTLGDDNIL 261
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max]
Length = 988
Score = 81.3 bits (199), Expect = 1e-13
Identities = 36/73 (49%), Positives = 46/73 (63%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
LPM FE IW +G+ R+ DW SG+TH Y C V+ DG+ FKGP L +T+
Sbjct: 161 LPMAKFEKTIWEDFGEKCIYDQSDRQLHRDWNSGRTHVYQCFVFPDGNLRFKGPILQSTR 220
Query: 183 THLQRELGDENVL 221
THLQ+ LGD+NVL
Sbjct: 221 THLQKTLGDDNVL 233
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 81.3 bits (199), Expect = 1e-13
Identities = 38/73 (52%), Positives = 46/73 (63%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
L M FE +IW T GQ E+ R DW+SG+TH Y C V +GS FKGP L T+
Sbjct: 172 LTMKNFEKEIWETVGQKYIERPTDRLVYLDWDSGRTHIYQCFVSPNGSLRFKGPILQHTR 231
Query: 183 THLQRELGDENVL 221
THLQ+ LGD+NVL
Sbjct: 232 THLQKSLGDDNVL 244
>ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329805|gb|EFH60224.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 934
Score = 80.9 bits (198), Expect = 2e-13
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
LPM +E+++WN GQ C + RR + +SGKTH+Y CHV DGSY FKG L T
Sbjct: 172 LPMVEYEAEVWNRLGQRYCPPKERRRPL-EGDSGKTHYYQCHVAPDGSYKFKGYLLEDTG 230
Query: 183 THLQRELGDENVL 221
THL + LGD+NVL
Sbjct: 231 THLHKVLGDDNVL 243
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 80.5 bits (197), Expect = 2e-13
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
L M FE Q+W +G+ ++ D RR DW+SGKTH Y CHV +GS+ FKGP L K
Sbjct: 158 LSMVQFEKQVWQRFGEKYVDQED-RRIYHDWDSGKTHIYRCHVSPEGSFRFKGPYLEKPK 216
Query: 183 THLQRELGDENVL 221
HLQ+ LGD+NVL
Sbjct: 217 KHLQKVLGDDNVL 229
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 79.3 bits (194), Expect = 5e-13
Identities = 37/73 (50%), Positives = 47/73 (64%)
Frame = +3
Query: 3 LPMDAFESQIWNTYGQHSCEKLDGRRECTDWESGKTHFYYCHVYGDGSYSFKGPCLNTTK 182
LPM ++E+ +WN GQ C + RR + +SG TH+Y CHV DGSY FKG L T
Sbjct: 179 LPMVSYEAAVWNRLGQRYCSPKERRRPL-EGDSGMTHYYQCHVATDGSYKFKGHLLENTG 237
Query: 183 THLQRELGDENVL 221
THL + LGD+NVL
Sbjct: 238 THLHKVLGDDNVL 250