BLASTX nr result
ID: Rauwolfia21_contig00026117
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rauwolfia21_contig00026117
(285 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660... 97 2e-18
ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein A... 96 6e-18
ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A... 92 5e-17
ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein A... 87 3e-15
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 80 3e-13
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 80 3e-13
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 79 8e-13
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 79 8e-13
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 77 3e-12
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 76 5e-12
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 74 3e-11
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript... 73 3e-11
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 73 3e-11
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 73 3e-11
ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665... 73 4e-11
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 73 4e-11
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 72 8e-11
gb|AAD17361.1| contains similarity to reverse transcriptases: pa... 71 1e-10
ref|XP_002331075.1| predicted protein [Populus trichocarpa] 71 1e-10
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 71 1e-10
>ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660482 [Glycine max]
Length = 303
Score = 97.1 bits (240), Expect = 2e-18
Identities = 48/99 (48%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL + RL V YA LL KI+G + GW+ SLSY + +LI V+QG++ FW+ IF P
Sbjct: 98 PLLSSRLNVCHYAPLLSKITGLIQGWSRKSLSYAGKLELIRAVIQGIVNFWIGIFPLPQS 157
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
VL RINA R FLW K+ L++WS C PK+EGG
Sbjct: 158 VLDRINASCRNFLWGKADIGKKKPLVAWSVVCSPKREGG 196
>ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 192
Score = 95.5 bits (236), Expect = 6e-18
Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL + RL V YALLL KI+G + GW+ SLSY + +LI V+QG++ FW+ IF P
Sbjct: 55 PLLSSRLNVCHYALLLSKITGLIQGWSKKSLSYAGKLELIRAVIQGIVNFWMEIFSLPQS 114
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
V+ INA R FLW + L++WS C PKKEGG
Sbjct: 115 VMDWINASCRNFLWGKADIGKNKPLVAWSVVCSPKKEGG 153
>ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 239
Score = 92.4 bits (228), Expect = 5e-17
Identities = 48/99 (48%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL + RL V YA LL KI+G + GW+ SLSY + +LI V+QG++ FW+ IF
Sbjct: 98 PLLSSRLNVCHYAPLLSKITGLIQGWSRKSLSYAGKLELIRAVIQGIVNFWMKIFPLSQS 157
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
VL RINA FLW +SLI+WS C PKKEGG
Sbjct: 158 VLDRINASCCNFLWGKADIGKNKSLIAWSVVCSPKKEGG 196
>ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 316
Score = 86.7 bits (213), Expect = 3e-15
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL + RL V YA LL KI G + GW SLSY + +LI V+QG++ FW+ IF P
Sbjct: 131 PLLSSRLNVCHYAPLLYKIVGLIQGWNKKSLSYVGKLELIKAVIQGIMNFWMRIFPLPQS 190
Query: 183 VLHRINAQLR*FLWN-----SKQSLISWSKFCVPKKEGG 284
VL RINA FLW+ + L++W C PK+EGG
Sbjct: 191 VLDRINASCCNFLWSKADIGKNKPLVAWPVVCSPKQEGG 229
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 80.1 bits (196), Expect = 3e-13
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +++L + Y +L+DKI G + W+A LSY R QLI V+ I FW+ P
Sbjct: 588 PLSSKKLNIKHYQVLIDKIVGRITHWSAGLLSYAGRVQLIQSVIFATINFWMQCLPLPKF 647
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
V+ RINA R FLW S++S I+W K C PK GG
Sbjct: 648 VIMRINAICRSFLWIGNSNISRKSPIAWEKVCSPKINGG 686
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 80.1 bits (196), Expect = 3e-13
Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +++L + L++K+ +N WTA LSY R+QL+ VL GV W +F+ PA
Sbjct: 568 PLSSKKLNTIQWYPLIEKVMARINSWTAKKLSYAGRAQLVKTVLFGVQALWAQLFIIPAK 627
Query: 183 VLHRINAQLR*FLWN-----SKQSLISWSKFCVPKKEGG 284
++ I R +LW+ +K++LI+W K C PK EGG
Sbjct: 628 IIKLIEGLCRSYLWSGVGYVTKKALIAWDKVCSPKYEGG 666
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 78.6 bits (192), Expect = 8e-13
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +L+++ Y LL+K+S + W + +LS+ R+QLIS V+ G+I FW+S FL P
Sbjct: 628 PLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKG 687
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
+ +I + FLW K S +SW C+PK EGG
Sbjct: 688 CIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGG 726
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 78.6 bits (192), Expect = 8e-13
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +L+++ Y LL+K+S + W + +LS+ R+QLIS V+ G+I FW+S FL P
Sbjct: 628 PLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKG 687
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
+ +I + FLW K S +SW C+PK EGG
Sbjct: 688 CIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGG 726
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL + +L ++ YA L++KI+ N W LS+ R QL++ V+ G++ FW+S F+ P
Sbjct: 665 PLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLG 724
Query: 183 VLHRINAQLR*FLWNSK-----QSLISWSKFCVPKKEGG 284
+ +I + FLW+S+ + ++WS+ C+PK EGG
Sbjct: 725 CIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGG 763
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 75.9 bits (185), Expect = 5e-12
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 5/96 (5%)
Frame = +3
Query: 12 AERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAIVLH 191
A +L+++ Y LL+K++ W+ LS+ R QLI+ V+ G+I FW+S F+ P +
Sbjct: 704 ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCVK 763
Query: 192 RINAQLR*FLWN-----SKQSLISWSKFCVPKKEGG 284
RI A FLW+ K + ++WS+ C+PK+EGG
Sbjct: 764 RIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGG 799
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 73.6 bits (179), Expect = 3e-11
Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +L+++ Y LL+KI+ W LS+ R QLIS V+ G I FW+S FL P
Sbjct: 768 PLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKG 827
Query: 183 VLHRINAQLR*FLWN-----SKQSLISWSKFCVPKKEGG 284
+ RI + FLW+ +K +SW+ C+PK EGG
Sbjct: 828 CIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGG 866
>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 746
Score = 73.2 bits (178), Expect = 3e-11
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +++ S Y L++KI + WTA LS+ R QLIS V+ + FW+S F P+
Sbjct: 31 PLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSA 90
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
+ I++ FLW N+K++ ++WS C PK EGG
Sbjct: 91 CIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGG 129
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 73.2 bits (178), Expect = 3e-11
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL + +L++S + L+ KI +N W SLS+ R QL+S V+ G++ FW+S F P
Sbjct: 39 PLMSRKLKISEFEPLVVKIKAKLNFWAVKSLSFAGRLQLLSSVISGIVVFWMSTFRLPKG 98
Query: 183 VLHRINAQLR*FLWNS-----KQSLISWSKFCVPKKEGG 284
+ I + FLW+ ++ +SWS C+PK EGG
Sbjct: 99 CIREIESMCARFLWSGGTDEHHKAKVSWSTVCLPKAEGG 137
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 73.2 bits (178), Expect = 3e-11
Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +++ S Y L++KI + WTA LS+ R QLIS V+ + FW+S F P+
Sbjct: 31 PLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSA 90
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
+ I++ FLW N+K++ ++WS C PK EGG
Sbjct: 91 CIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGG 129
>ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665746 [Glycine max]
Length = 506
Score = 72.8 bits (177), Expect = 4e-11
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
P+ +++L Y+ L+DKI G + WTA LSY R QL++ V+ + +WL+ F P
Sbjct: 146 PVTSKKLSTIHYSPLIDKIVGKIKHWTARLLSYAGRLQLVNSVMFALTNYWLNCFPFPKS 205
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
VL +I A R FLW S++S ++W + C P+ GG
Sbjct: 206 VLQKIEAICRIFLWTGGFEGSRKSPVAWKQICSPRSCGG 244
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 72.8 bits (177), Expect = 4e-11
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +R+ S Y L++KI + WT LS+ R QLI VL + FWLS+F P
Sbjct: 922 PLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKA 981
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
L I FLW N+K++ I+WS+ C K+EGG
Sbjct: 982 CLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGG 1020
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 72.0 bits (175), Expect = 8e-11
Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +L+ S Y+ L+DKI+ N W +LS+ R QLIS V+ + FWLS F+ P
Sbjct: 767 PLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKC 826
Query: 183 VLHRINAQLR*FLWNSK-----QSLISWSKFCVPKKEGG 284
L I FLW + +SW C+PK EGG
Sbjct: 827 CLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGG 865
>gb|AAD17361.1| contains similarity to reverse transcriptases: partial CDS, partial
[Arabidopsis thaliana] gi|7267375|emb|CAB77936.1|
putative reverse transcriptase [Arabidopsis thaliana]
Length = 392
Score = 71.2 bits (173), Expect = 1e-10
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +R+ + Y L++KI + WT LS+ + QLIS V+Q + FW+S F P
Sbjct: 139 PLLTKRMTRNDYTRLIEKIRDKIGKWTTRHLSFAGQLQLISSVIQNLTNFWMSAFWLPTA 198
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
+ IN+ FLW ++K++ + WS+ C PK EGG
Sbjct: 199 CIKEINSLCSAFLWSGPKLSTKKAKVVWSEVCTPKCEGG 237
>ref|XP_002331075.1| predicted protein [Populus trichocarpa]
Length = 517
Score = 71.2 bits (173), Expect = 1e-10
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL + RL+ L+D+I+ V WT +LSY R QLI+ VL + +W S+FL P
Sbjct: 62 PLLSSRLKAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQ 121
Query: 183 VLHRINAQLR*FLWNSKQ-----SLISWSKFCVPKKEGG 284
V+ + ++ FLW+ + ++W + C+PKKEGG
Sbjct: 122 VIKNVEQIMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGG 160
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 71.2 bits (173), Expect = 1e-10
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Frame = +3
Query: 3 PLEAERLQVSLYALLLDKISGYVNGWTASSLSYTRRSQLISLVLQGVIGFWLSIFLTPAI 182
PL +++ + Y+ L++ + ++ WTA SLSY R L++ V+ + FW+S + PA
Sbjct: 1072 PLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAG 1131
Query: 183 VLHRINAQLR*FLW-----NSKQSLISWSKFCVPKKEGG 284
+ I FLW N K++ I+WS C PKKEGG
Sbjct: 1132 CIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGG 1170